RchiOBHm_Chr6g0284941

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001113
Physical Location & Seq
Reverse (-)
48259977 .. 48267070
7094 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25556

Sequence Viewer

Length: 2472 bp
ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTATATTCATGATTATTTGTTGAAAAGGAAATTGACTGCTTCTGCAAATACATTTATGACTGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCAGGAGGATTCCTCTTTGAATGGTGGTCTGTTTTCTGGGACATATTCATAGCAAGGACAAATGAGAAGCACTCAGAGGCTGCTGCATCTTACATTGAGGCACAGCAAATTAAGACGAGGGAGCAACAACAGTTGCAAATGCAGCAGATGCAGATATTGCAGCAGCGTAATGCTCAGTTACAGCGTAGAGATCCAAATGCTTTAAATGCTATAAACTCTGAAGGGGTAATGGGGCAACCTTCAGCCAGTGTGCTAGCCATGAAAATGTATGAAGAACGCATGAAACATCCTCACTCGATGGATGCTGAAGCATCCCCAGGTCTTACTGATGCCAATAGGATTGCCCTTCTCAAATCAGCTACAAATGCACAAGGCCAGTTGACACAAACCAATTCCGGAAACATGTCTGCTGCTTTGCAGCAAATGCAAGCACGCAATCCTTTGACCACTGACATCAAAAGTGAAGTTAACTTAGGTACAGCTCAGAGAAGTTTGCCTATGGATCCTTCATCGATTTATGGACAAGCAATTTTACAGTCAAAATCTGGATTGGGTGGTGCAGGATTGAATCAAGGTGTCACAGGTCTTCCTTTGAAGGGTTGGCCTCTTACTGGAATCGACCAATTACGACCAAACTTGGGTGTACAAGTACAGAAGTCAAATTTTCAGACCCAAAGTCAATTCCTTTTAGCACCTCAACAACAACAAGTCTTGGCACAAGCCCAGGCTCAGGCACAAAACAACCTTGGAAATTCAACAAGCTACGGAGATCTGGATCCTCGTAGGTTTTCTGGTTTGCCTAGGAGTGGCATGAATGCAAAAGATGGTCAATCTGCAATGCAGTCAAGTTCACCAAAGATAAAAATGCCTCAGATGCAACAGTCTTCCTCCCACTCCCAACAACATGACCAATTGCAGCAGCAGCCGTTACAACAGAATAACAGAAAAAGGAAACAACACTCTTCTTCTGGACCTGCCAACAGCAACAACACGGGAAACACTGTTGGCCGTTCCCCTGGTTCTCCAGCATCAACTCACACACCAGGTGATGGAATTAACACAGCCAGTAGTCTGCAGCATGTTAACAACATTCCGAAAAGCTTGATGATGTATGGTCCAGAAGGAACAGGAGGTCTTCCTTCATCTTCCAATTTATTGGAAGACATGGAACGATTTGGAGATGTTGGTACCCTAGAAGATAATGTGGAATCGTTTTTGTCACCTGATGGGGGAGATGGGAGGGATGTATATGGGACACTGAAGCAGAGTCCTAGTGAGCCCAGGAAGGAGTCTTCTAAAGGTTTTACCTTTGGTGAAGTTGGTTGCGTAAGGACCAGAAGCAGCAAAGTGACCTGCTGTCACTTTTCTTCGGATGGGAAGTTGCTGGCTAGTGCTGGACATGACAAAAAGGTTGTCCTCTGGAACATGGATACCCTGCAGACAGAGAGCACTCCTGAAGAACACAAGTTGGTCATTACAGATGTTCGTTTTAGACCAAATTCATCTCAGCTGGCAACAGCTTCAGTTGACAAAACTGTGCGATTATGGGATGCAGCCAATCCAAACTATTGTTTGCAAGCATATACAGGGCACAGCGCACCTGTTATGTCCCTTGACTTCCACCCTAAGAAGACCGATCTATTTTGTTTCTGTGATAGCGACAATGAAATTCGTTACTGGAATATCAGTCCATTCTCCTGTACTCGTATTTCAAAGGGAGCTACTGCACAAGTTAGATTTCAACCAAGAGTGGGACAATTCCTGGCAGCAGCATCAGATAAAATTGTTTCCATCTTTGACGTCGAAACTGACAGGCAAACACACTCATTCCAGGGGCACTCTGAAATGGTAAACTACATTTGTTGGGATGCAAATGGAGAGTTTGTGGCGTCTGTCAGTCAAAGTTTGGTGAAGATTTGGTCGTTAGCTTCAGGACAGTGTATTCAGGAGCTTGGCTCAAATGGGAACCAGTTTCACTCGTGCATTTTTCATCCAAGTTATTCAACTCTCTTGGTCATTGGAGGAATCTCGTCCTTGGATCTGTGGAACATGGCTGAGAATAAGAGCATGACAATTCCGGCACATGAGAATATAATCTCAGCTCTGGCTCAGTCATCCGAAACCGGAATGGTTGCATCTGCAAGTCACGATAGCTCCGTCAAGTTATGGAATAAACCCAAAAGTTTTTGGGGATCTTGGAGAGGCAAAATCTGGGGGGAGAGTTGGTGGCCGAGATTTAGAATTATAAGCATTAATATTATAGCAAGTAGAGTCATAAGCTTTGACCAAAAAAAAAAAAAAAAGAGTCATAAGCAGTTCTTTCAGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

823

Amino Acids

90.61

Weight (kDa)

8.6

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_MABP1-WDR62_2nd PF24782 486 - 689 6.1e-14 MABP1/WDR62 second WD40 domain
Beta-prop_TEP1_2nd PF25047 487 - 617 3.4e-12 TEP-1 second beta-propeller
EIF3I PF24805 490 - 567 7.4e-07 EIF3I
Beta-prop_WDR5 PF25175 492 - 616 2.2e-26 WDR5 beta-propeller domain
WD40_Prp19 PF24814 492 - 733 1.7e-35 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 493 - 595 1e-07 CAF1B/HIR1 beta-propeller domain
WD40_WDHD1_1st PF24817 493 - 569 2.6e-11 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 494 - 611 3.3e-14 Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta PF25391 494 - 607 2.6e-09 G protein beta WD-40 repeat protein
Beta-prop_WDR36-Utp21_2nd PF25168 494 - 591 1.3e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_THOC3 PF25174 494 - 568 6.6e-16 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 494 - 609 1.8e-21 WDR3 first beta-propeller domain
Beta-prop_WDR3_2nd PF25172 494 - 646 1.2e-14 WDR3 second beta-propeller domain
WD40 PF00400 494 - 522 8.1e-07 WD domain, G-beta repeat
Beta-prop_EML PF23409 496 - 676 1e-05 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 527 - 681 1.6e-13 CDC20/Fizzy WD40 domain
WD40 PF00400 531 - 564 2.5e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 535 - 619 4e-14 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 539 - 719 5.6e-19 WDHD1 first WD40 domain
Beta-prop_WDR3_2nd PF25172 571 - 681 2.8e-07 WDR3 second beta-propeller domain
WDR55 PF24796 581 - 736 1.8e-08 WDR55
Beta-prop_WDR36-Utp21_2nd PF25168 600 - 697 2.9e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 602 - 771 1.5e-07 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 618 - 693 7.5e-06 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 619 - 772 1.2e-25 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 619 - 771 3.5e-17 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 623 - 771 1e-20 THOC3 beta-propeller domain
Beta-prop_WDR19_1st PF23389 625 - 771 1.1e-06 WDR19 first beta-propeller
WD40_CDC20-Fz PF24807 632 - 770 7.3e-10 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 633 - 770 1.4e-07 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 666 - 771 4.7e-09 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2387
AatII GACGTC 1 cut(s) 1944
Acc36I ACCTGC 2 cut(s) 1123, 1502
Acc65I GGTACC 1 cut(s) 1328
AccB1I GGYRCC 1 cut(s) 1328
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccIII TCCGGA 1 cut(s) 536
AclWI GGATC 8 cut(s) 116, 326, 638, 651, 911, 924, 2187, 2341
AcoI YGGCCR 2 cut(s) 1147, 2369
AcsI RAATTY 4 cut(s) 802, 892, 1639, 1809
AcuI CTGAAG 8 cut(s) 123, 366, 381, 468, 1421, 1617, 1647, 2055
AcyI GRCGYC 2 cut(s) 1941, 2030
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 5 cut(s) 619, 786, 792, 1330, 1843
AfiI CCNNNNNNNGG 8 cut(s) 737, 752, 779, 871, 947, 1190, 1370, 1892
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 8 cut(s) 64, 161, 709, 736, 897, 1854, 1883, 2145
AhdI GACNNNNNGTC 2 cut(s) 816, 1497
AjnI CCWGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
Alw21I GWGCWC 1 cut(s) 1592
AlwI GGATC 8 cut(s) 116, 326, 638, 651, 911, 924, 2187, 2341
AlwNI CAGNNNCTG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 4 cut(s) 514, 743, 1147, 2369
ApoI RAATTY 4 cut(s) 802, 892, 1639, 1809
ArsI GACNNNNNNTTYG 2 cut(s) 1539, 1571
AseI ATTAAT 1 cut(s) 2394
Asp718I GGTACC 1 cut(s) 1328
AspA2I CCTAGG 1 cut(s) 941
AspLEI GCGC 2 cut(s) 7, 1739
AspS9I GGNCC 3 cut(s) 1112, 1256, 1473
AsuHPI GGTGA 5 cut(s) 984, 1199, 1353, 1466, 2062
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 3 cut(s) 1112, 1256, 1473
AvrII CCTAGG 1 cut(s) 941
BaeGI GKGCMC 2 cut(s) 1734, 1980
BamHI GGATCC 2 cut(s) 643, 916
BanI GGYRCC 1 cut(s) 1328
BanII GRGCYC 1 cut(s) 1422
BauI CACGAG 1 cut(s) 2119
BbsI GAAGAC 6 cut(s) 719, 1017, 1268, 1308, 1425, 1778
Bbv12I GWGCWC 1 cut(s) 1592
BccI CCATC 7 cut(s) 433, 959, 1184, 1361, 1370, 1508, 1940
BceAI ACGGC 2 cut(s) 1051, 1134
BciT130I CCWGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
BciVI GTATCC 1 cut(s) 1564
BfaI CTAG 5 cut(s) 395, 942, 1334, 1413, 1530
BfmI CTRYAG 3 cut(s) 117, 1214, 1577
BfuAI ACCTGC 2 cut(s) 1123, 1502
BfuI GTATCC 1 cut(s) 1564
BglII AGATCT 1 cut(s) 910
BlnI CCTAGG 1 cut(s) 941
Bme1390I CCNGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
Bme18I GGWCC 3 cut(s) 1112, 1256, 1473
BmeRI GACNNNNNGTC 2 cut(s) 816, 1497
BmgT120I GGNCC 3 cut(s) 1112, 1256, 1473
BmiI GGNNCC 4 cut(s) 645, 918, 1330, 2108
BmrFI CCNGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 6 cut(s) 719, 1017, 1268, 1308, 1425, 1778
BplI GAGNNNNNCTC 6 cut(s) 138, 170, 197, 229, 2081, 2113
BpmI CTGGAG 1 cut(s) 1149
Bpu10I CCTNAGC 1 cut(s) 870
Bsa29I ATCGAT 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 2 cut(s) 1941, 2030
BsaJI CCNNGG 8 cut(s) 457, 864, 886, 941, 1156, 1421, 1972, 2175
BsaWI WCCGGW 2 cut(s) 536, 2264
BsaXI ACNNNNNCTCC 6 cut(s) 2010, 2040, 2279, 2309, 2351, 2381
Bsc4I CCNNNNNNNGG 8 cut(s) 737, 752, 779, 871, 947, 1190, 1370, 1892
Bse1I ACTGG 7 cut(s) 125, 387, 517, 757, 1206, 1823, 2110
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 915
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 8 cut(s) 457, 864, 886, 941, 1156, 1421, 1972, 2175
BseGI GGATG 9 cut(s) 427, 448, 452, 1390, 1519, 1696, 2014, 2131, 2255
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 8 cut(s) 737, 752, 779, 871, 947, 1190, 1370, 1892
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 9 cut(s) 228, 329, 638, 884, 1025, 1661, 2187, 2253, 2264
BseNI ACTGG 7 cut(s) 125, 387, 517, 757, 1206, 1823, 2110
BseSI GKGCMC 2 cut(s) 1734, 1980
BsgI GTGCAG 2 cut(s) 720, 1851
BshFI GGCC 4 cut(s) 516, 745, 1149, 2371
BshNI GGYRCC 1 cut(s) 1328
BshVI ATCGAT 1 cut(s) 653
BsiHKAI GWGCWC 1 cut(s) 1592
BsiSI CCGG 3 cut(s) 537, 2219, 2265
BslFI GGGAC 4 cut(s) 194, 1408, 1735, 1908
BslI CCNNNNNNNGG 8 cut(s) 737, 752, 779, 871, 947, 1190, 1370, 1892
BsmFI GGGAC 4 cut(s) 194, 1408, 1735, 1908
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 4 cut(s) 516, 745, 1149, 2371
Bsp1286I GDGCHC 4 cut(s) 1422, 1592, 1734, 1980
Bsp13I TCCGGA 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
BspANI GGCC 4 cut(s) 516, 745, 1149, 2371
BspCNI CTCAG 9 cut(s) 227, 328, 637, 883, 1024, 1660, 2188, 2252, 2263
BspDI ATCGAT 1 cut(s) 653
BspEI TCCGGA 1 cut(s) 536
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 4 cut(s) 645, 918, 1330, 2108
BspMAI CTGCAG 2 cut(s) 1218, 1581
BspMI ACCTGC 2 cut(s) 1123, 1502
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 8 cut(s) 116, 326, 638, 651, 911, 924, 2187, 2341
BspT107I GGYRCC 1 cut(s) 1328
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 7 cut(s) 125, 387, 517, 757, 1206, 1823, 2110
BssECI CCNNGG 8 cut(s) 457, 864, 886, 941, 1156, 1421, 1972, 2175
BssMI GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
BssNI GRCGYC 2 cut(s) 1941, 2030
BssSI CACGAG 1 cut(s) 2119
BssT1I CCWWGG 3 cut(s) 886, 941, 2175
Bst2BI CACGAG 1 cut(s) 2119
Bst2UI CCWGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
Bst4CI ACNGT 6 cut(s) 273, 678, 1023, 1144, 1678, 2079
Bst6I CTCTTC 1 cut(s) 1108
BstACI GRCGYC 2 cut(s) 1941, 2030
BstAPI GCANNNNNTGC 4 cut(s) 137, 289, 298, 565
BstAUI TGTACA 1 cut(s) 784
BstC8I GCNNGC 6 cut(s) 396, 570, 574, 1527, 1653, 1719
BstF5I GGATG 9 cut(s) 427, 448, 452, 1390, 1519, 1696, 2014, 2131, 2255
BstHHI GCGC 2 cut(s) 7, 1739
BstKTI GATC 8 cut(s) 124, 334, 646, 913, 919, 1780, 2182, 2336
BstMBI GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
BstMWI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
BstNI CCWGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
BstNSI RCATGY 2 cut(s) 547, 1223
BstSCI CCNGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
BstSFI CTRYAG 3 cut(s) 117, 1214, 1577
BstSLI GKGCMC 2 cut(s) 1734, 1980
BstV2I GAAGAC 6 cut(s) 719, 1017, 1268, 1308, 1425, 1778
BstX2I RGATCY 7 cut(s) 121, 331, 643, 910, 916, 2179, 2333
BstXI CCANNNNNNTGG 1 cut(s) 1297
BstYI RGATCY 7 cut(s) 121, 331, 643, 910, 916, 2179, 2333
Bsu15I ATCGAT 1 cut(s) 653
BsuI GTATCC 1 cut(s) 1564
BsuRI GGCC 4 cut(s) 516, 745, 1149, 2371
BsuTUI ATCGAT 1 cut(s) 653
BtsCI GGATG 9 cut(s) 427, 448, 452, 1390, 1519, 1696, 2014, 2131, 2255
BtsIMutI CAGTG 5 cut(s) 394, 588, 1140, 1397, 2084
BveI ACCTGC 2 cut(s) 1123, 1502
Cac8I GCNNGC 6 cut(s) 396, 570, 574, 1527, 1653, 1719
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 49
CfoI GCGC 2 cut(s) 7, 1739
Cfr13I GGNCC 3 cut(s) 1112, 1256, 1473
ClaI ATCGAT 1 cut(s) 653
CseI GACGC 1 cut(s) 2019
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 5 cut(s) 618, 785, 791, 1329, 1842
CviQI GTAC 5 cut(s) 618, 785, 791, 1329, 1842
DpnI GATC 8 cut(s) 123, 333, 645, 912, 918, 1779, 2181, 2335
DpnII GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 1187
DriI GACNNNNNGTC 2 cut(s) 816, 1497
EaeI YGGCCR 2 cut(s) 1147, 2369
Eam1104I CTCTTC 1 cut(s) 1108
Eam1105I GACNNNNNGTC 2 cut(s) 816, 1497
EarI CTCTTC 1 cut(s) 1108
Eco130I CCWWGG 3 cut(s) 886, 941, 2175
Eco24I GRGCYC 1 cut(s) 1422
Eco47I GGWCC 3 cut(s) 1112, 1256, 1473
Eco57I CTGAAG 8 cut(s) 123, 366, 381, 468, 1421, 1617, 1647, 2055
EcoRII CCWGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
EcoT14I CCWWGG 3 cut(s) 886, 941, 2175
EcoT38I GRGCYC 1 cut(s) 1422
ErhI CCWWGG 3 cut(s) 886, 941, 2175
FalI AAGNNNNNCTT 1 cut(s) 2444
FaqI GGGAC 4 cut(s) 194, 1408, 1735, 1908
FokI GGATG 9 cut(s) 414, 439, 455, 1397, 1526, 1703, 2021, 2118, 2242
FriOI GRGCYC 1 cut(s) 1422
FspBI CTAG 5 cut(s) 395, 942, 1334, 1413, 1530
GlaI GCGC 2 cut(s) 6, 1738
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 4 cut(s) 516, 745, 1149, 2371
HapII CCGG 3 cut(s) 537, 2219, 2265
HgaI GACGC 1 cut(s) 2019
HhaI GCGC 2 cut(s) 7, 1739
Hin1I GRCGYC 2 cut(s) 1941, 2030
Hin6I GCGC 2 cut(s) 5, 1737
HinP1I GCGC 2 cut(s) 5, 1737
HincII GTYRAC 4 cut(s) 522, 610, 1225, 1669
HindII GTYRAC 4 cut(s) 522, 610, 1225, 1669
HindIII AAGCTT 2 cut(s) 1240, 2419
HinfI GANTC 9 cut(s) 150, 709, 756, 1349, 1408, 1430, 2166, 2412, 2446
HpaI GTTAAC 2 cut(s) 610, 1225
HpaII CCGG 3 cut(s) 537, 2219, 2265
HphI GGTGA 5 cut(s) 984, 1199, 1353, 1466, 2062
Hpy166II GTNNAC 7 cut(s) 522, 610, 785, 992, 1225, 1669, 1993
Hpy8I GTNNAC 7 cut(s) 522, 610, 785, 992, 1225, 1669, 1993
Hpy99I CGWCG 1 cut(s) 1946
HpyCH4III ACNGT 6 cut(s) 273, 678, 1023, 1144, 1678, 2079
HpyCH4IV ACGT 1 cut(s) 1941
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
HpySE526I ACGT 1 cut(s) 1941
Hsp92I GRCGYC 2 cut(s) 1941, 2030
HspAI GCGC 2 cut(s) 5, 1737
Kpn2I TCCGGA 1 cut(s) 536
KpnI GGTACC 1 cut(s) 1332
KspAI GTTAAC 2 cut(s) 610, 1225
Kzo9I GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
LmnI GCTCC 4 cut(s) 262, 1859, 2089, 2300
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 5 cut(s) 395, 942, 1334, 1413, 1530
MaeII ACGT 1 cut(s) 1941
MaeIII GTNAC 8 cut(s) 318, 718, 1068, 1359, 1489, 1499, 1814, 2285
MalI GATC 8 cut(s) 123, 333, 645, 912, 918, 1779, 2181, 2335
MboI GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
MfeI CAATTG 2 cut(s) 132, 1052
MflI RGATCY 7 cut(s) 121, 331, 643, 910, 916, 2179, 2333
MhlI GDGCHC 4 cut(s) 1422, 1592, 1734, 1980
MlyI GAGTC 4 cut(s) 1417, 1439, 2421, 2455
MroI TCCGGA 1 cut(s) 536
MseI TTAA 6 cut(s) 252, 344, 609, 1197, 1224, 2394
MslI CAYNNNNRTG 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 1651
MspI CCGG 3 cut(s) 537, 2219, 2265
MspR9I CCNGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
MunI CAATTG 2 cut(s) 132, 1052
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
MwoI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
NdeII GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
NheI GCTAGC 1 cut(s) 394
NlaIV GGNNCC 4 cut(s) 645, 918, 1330, 2108
NmeAIII GCCGAG 1 cut(s) 2397
NmuCI GTSAC 5 cut(s) 718, 1359, 1489, 1499, 2285
NspI RCATGY 2 cut(s) 547, 1223
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 2295
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 5 cut(s) 150, 709, 756, 1349, 2166
PflMI CCANNNNNTGG 1 cut(s) 1190
PleI GAGTC 4 cut(s) 1416, 1438, 2420, 2454
PpsI GAGTC 4 cut(s) 1416, 1438, 2420, 2454
PscI ACATGT 1 cut(s) 543
PshBI ATTAAT 1 cut(s) 2394
PsiI TTATAA 1 cut(s) 2387
Psp6I CCWGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
PspGI CCWGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
PspN4I GGNNCC 4 cut(s) 645, 918, 1330, 2108
PspPI GGNCC 3 cut(s) 1112, 1256, 1473
PstI CTGCAG 2 cut(s) 1218, 1581
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 7 cut(s) 121, 331, 643, 910, 916, 2179, 2333
PvuII CAGCTG 1 cut(s) 1651
RsaI GTAC 5 cut(s) 619, 786, 792, 1330, 1843
RsaNI GTAC 5 cut(s) 618, 785, 791, 1329, 1842
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 6 cut(s) 252, 344, 609, 1197, 1224, 2394
Sau3AI GATC 8 cut(s) 121, 331, 643, 910, 916, 1777, 2179, 2333
Sau96I GGNCC 3 cut(s) 1112, 1256, 1473
SchI GAGTC 4 cut(s) 1417, 1439, 2421, 2455
ScrFI CCNGG 8 cut(s) 144, 459, 866, 1158, 1185, 1423, 1904, 1973
SduI GDGCHC 4 cut(s) 1422, 1592, 1734, 1980
SexAI ACCWGGT 1 cut(s) 1183
SfcI CTRYAG 3 cut(s) 117, 1214, 1577
SinI GGWCC 3 cut(s) 1112, 1256, 1473
SmiMI CAYNNNNRTG 1 cut(s) 404
SspI AATATT 1 cut(s) 2398
SspMI CTAG 5 cut(s) 395, 942, 1334, 1413, 1530
StyD4I CCNGG 8 cut(s) 142, 457, 864, 1156, 1183, 1421, 1902, 1971
StyI CCWWGG 3 cut(s) 886, 941, 2175
TaaI ACNGT 6 cut(s) 273, 678, 1023, 1144, 1678, 2079
TaiI ACGT 1 cut(s) 1944
TaqI TCGA 4 cut(s) 437, 653, 759, 1944
TaqII GACCGA 1 cut(s) 1790
TatI WGTACW 3 cut(s) 784, 790, 1841
TfiI GAWTC 5 cut(s) 150, 709, 756, 1349, 2166
Tru1I TTAA 6 cut(s) 252, 344, 609, 1197, 1224, 2394
Tru9I TTAA 6 cut(s) 252, 344, 609, 1197, 1224, 2394
TscAI CASTG 5 cut(s) 394, 595, 1147, 1404, 2084
TseFI GTSAC 5 cut(s) 718, 1359, 1489, 1499, 2285
Tsp45I GTSAC 5 cut(s) 718, 1359, 1489, 1499, 2285
TspGWI ACGGA 2 cut(s) 921, 2287
TspRI CASTG 5 cut(s) 394, 595, 1147, 1404, 2084
Van91I CCANNNNNTGG 1 cut(s) 1190
VpaK11BI GGWCC 3 cut(s) 1112, 1256, 1473
VspI ATTAAT 1 cut(s) 2394
XapI RAATTY 4 cut(s) 802, 892, 1639, 1809
XceI RCATGY 2 cut(s) 547, 1223
XmaJI CCTAGG 1 cut(s) 941
XspI CTAG 5 cut(s) 395, 942, 1334, 1413, 1530
ZraI GACGTC 1 cut(s) 1942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.