Rorug06G0168900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001113
Physical Location & Seq
Forward (+)
24945829 .. 24947019
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0168900.1

Sequence Viewer

Length: 1191 bp
ATGAGCACCAATGCTGCTTTGGTGCACAATGCTATTAACTCTGGCATTCCTCCACTAGAGCCCGAAGAAGATCGGACTATCGTCATAACATTCTCTACTGTAGACCCTATTCCGGAACGTGAACTTAGAGACTTCTTTACTTGGTATATATATTGTACTACTGGGAATCAAATTACAGTTATGGATCATCATCATGTTATTGCTGCCATCCGTATGGAAAGTTTCCAACCTGGGGAGCGACCTTTTTGTGCCTACATTGTGTTTCGATATGCTTCTTTGGTTGCACGTGTCCTTGGTGGAAACCAGAAGATGACATTCCACATTAATAGGTTTATTGTTTCCGGTAGGAAATATGAGCAGTCTCTAGAAGAGTTTAACAAATTTCACAACATTGATCGGAGGCTCTTCACTCGTTTAATCTACGATCTGAGACGTGACCTGGATGAATCAGCAGGGGTCATGGCATTGTGGATGTCGCTGGAGCACACCAGCAAGGAGTTTAACAACTTGGTGAACAAGGCATTGACTCTACCCGACACTGAGCTCAATGCCATGGCCGACGAGACGGTAATAGCCTTGAATTACATTAAGATTGATGATATCCAGAGTGACACGGAAATCCCTAAGCTCCAAGCCATAAGTGAAAGTCCTGTCACCCTCAAGTTCTTCCATGACAACCGCCATGTGATCATTTGCGCAGTCATCAAATTTCTCAAAGATGTTTGCTTGAGAGCTTTTCAGGACTTCCCTTATCAACCATACTACCATGCCAAGGCGAAGCTTATTGAAGAAACTAGCACCATTTTTCATCAAGAGAGCCAGATCGAGAATAAAGAAGCGGGGGAGACTTGTAGGAATTTGACGTTGAGTGATAATGAGTGTGATGAACAAGAGAGGACTCTTTTCCTAACATTCTCTAAAGGGTTCCCCCTTTCGGAAAATGAAGTCCGAGAGTGTTTCACTAGGGAATTTGGTGATATTATTGATCGTATCTACATGCAAGAAATTAAGGAAAAGTATCAGCAGCCTCTTTTTGCTCAACTAGTGGTTCGTTCGGCATCCTTGATTCCAGTGATTCTTGATGGAAAAAGCAAGGTGTACTTGAGCATAAATGGCAAGCACATTAGGGCCAAAAAATCTGTGCCTAAGTTGCGATCAAAATCACCAGAAGCATCATCCCAACCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

396

Amino Acids

45.72

Weight (kDa)

5.99

Isoelectric Point (pI)

56.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 697
AccI GTMKAC 1 cut(s) 102
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 2 cut(s) 679, 839
AclWI GGATC 1 cut(s) 192
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 4 cut(s) 380, 707, 856, 968
AcvI CACGTG 1 cut(s) 287
AfaI GTAC 2 cut(s) 157, 1100
AfiI CCNNNNNNNGG 4 cut(s) 112, 232, 772, 934
AflIII ACRYGT 1 cut(s) 286
AgsI TTSAA 2 cut(s) 580, 788
AhlI ACTAGT 1 cut(s) 1042
AjiI CACGTC 1 cut(s) 434
AjnI CCWGG 2 cut(s) 229, 438
AluBI AGCT 4 cut(s) 544, 628, 734, 781
AluI AGCT 4 cut(s) 544, 628, 734, 781
Alw21I GWGCWC 4 cut(s) 8, 27, 486, 546
Alw26I GTCTC 5 cut(s) 123, 366, 424, 557, 839
Alw44I GTGCAC 1 cut(s) 23
AlwI GGATC 1 cut(s) 192
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 2 cut(s) 555, 1128
ApaLI GTGCAC 1 cut(s) 23
ApeKI GCWGC 3 cut(s) 14, 203, 1024
ApoI RAATTY 4 cut(s) 380, 707, 856, 968
AseI ATTAAT 1 cut(s) 324
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 1128
AsuHPI GGTGA 4 cut(s) 523, 646, 986, 1155
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 2 cut(s) 63, 546
BbrPI CACGTG 1 cut(s) 287
Bbv12I GWGCWC 4 cut(s) 8, 27, 486, 546
BbvI GCAGC 2 cut(s) 190, 1036
BccI CCATC 2 cut(s) 215, 1076
BciT130I CCWGG 2 cut(s) 231, 440
BclI TGATCA 1 cut(s) 687
BcoDI GTCTC 5 cut(s) 123, 366, 424, 557, 839
BcuI ACTAGT 1 cut(s) 1042
BfaI CTAG 5 cut(s) 56, 365, 795, 963, 1043
BfmI CTRYAG 1 cut(s) 99
BisI GCNGC 3 cut(s) 15, 204, 1025
BlsI GCNGC 3 cut(s) 16, 205, 1026
Bme1390I CCNGG 2 cut(s) 231, 440
BmgBI CACGTC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 1 cut(s) 926
BmrFI CCNGG 2 cut(s) 231, 440
BmrI ACTGGG 1 cut(s) 171
BmsI GCATC 2 cut(s) 1067, 1181
BmuI ACTGGG 1 cut(s) 171
BoxI GACNNNNGTC 1 cut(s) 80
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 624
BpuEI CTTGAG 3 cut(s) 644, 748, 1123
BsaAI YACGTR 1 cut(s) 287
BsaBI GATNNNNATC 2 cut(s) 189, 1159
BsaJI CCNNGG 4 cut(s) 230, 292, 552, 771
BsaWI WCCGGW 2 cut(s) 112, 341
Bsc4I CCNNNNNNNGG 4 cut(s) 112, 232, 772, 934
Bse1I ACTGG 2 cut(s) 166, 1070
Bse8I GATNNNNATC 2 cut(s) 189, 1159
BseAI TCCGGA 1 cut(s) 112
BseBI CCWGG 2 cut(s) 231, 440
BseDI CCNNGG 4 cut(s) 230, 292, 552, 771
BseGI GGATG 5 cut(s) 207, 448, 477, 1058, 1175
BseJI GATNNNNATC 2 cut(s) 189, 1159
BseLI CCNNNNNNNGG 4 cut(s) 112, 232, 772, 934
BseMII CTCAG 2 cut(s) 419, 531
BseNI ACTGG 2 cut(s) 166, 1070
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 2 cut(s) 190, 1036
BshFI GGCC 2 cut(s) 557, 1130
BsiHKAI GWGCWC 4 cut(s) 8, 27, 486, 546
BsiSI CCGG 2 cut(s) 113, 342
BslI CCNNNNNNNGG 4 cut(s) 112, 232, 772, 934
BsmAI GTCTC 5 cut(s) 123, 366, 424, 557, 839
BsmBI CGTCTC 2 cut(s) 424, 557
BsmI GAATGC 1 cut(s) 45
BsnI GGCC 2 cut(s) 557, 1130
Bsp1286I GDGCHC 5 cut(s) 8, 27, 63, 486, 546
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 679, 839
BspANI GGCC 2 cut(s) 557, 1130
BspCNI CTCAG 2 cut(s) 420, 532
BspEI TCCGGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 926
BspPI GGATC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 410
BsrI ACTGG 2 cut(s) 166, 1070
BssECI CCNNGG 4 cut(s) 230, 292, 552, 771
BssMI GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
BssT1I CCWWGG 3 cut(s) 292, 552, 771
Bst2UI CCWGG 2 cut(s) 231, 440
Bst4CI ACNGT 3 cut(s) 100, 178, 568
Bst6I CTCTTC 2 cut(s) 363, 410
BstBAI YACGTR 1 cut(s) 287
BstC8I GCNNGC 1 cut(s) 1118
BstDEI CTNAG 5 cut(s) 125, 428, 540, 624, 1146
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 5 cut(s) 207, 448, 477, 1058, 1175
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 8 cut(s) 73, 187, 397, 427, 690, 825, 988, 1157
BstMAI GTCTC 5 cut(s) 123, 366, 424, 557, 839
BstMBI GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
BstMWI GCNNNNNNNGC 2 cut(s) 1113, 1150
BstNI CCWGG 2 cut(s) 231, 440
BstNSI RCATGY 1 cut(s) 1000
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 229, 438
BstSFI CTRYAG 1 cut(s) 99
BstSLI GKGCMC 1 cut(s) 27
BstV1I GCAGC 2 cut(s) 190, 1036
BstXI CCANNNNNNTGG 1 cut(s) 214
BsuRI GGCC 2 cut(s) 557, 1130
BtgI CCRYGG 1 cut(s) 552
BtrI CACGTC 1 cut(s) 434
BtsCI GGATG 5 cut(s) 207, 448, 477, 1058, 1175
BtsIMutI CAGTG 2 cut(s) 537, 1077
Cac8I GCNNGC 1 cut(s) 1118
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 1128
Csp6I GTAC 2 cut(s) 156, 1099
CviAII CATG 7 cut(s) 194, 460, 553, 671, 683, 767, 997
CviQI GTAC 2 cut(s) 156, 1099
DdeI CTNAG 5 cut(s) 125, 428, 540, 624, 1146
DpnI GATC 8 cut(s) 72, 186, 396, 426, 689, 824, 987, 1156
DpnII GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 2 cut(s) 363, 410
EarI CTCTTC 2 cut(s) 363, 410
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 3 cut(s) 292, 552, 771
Eco24I GRGCYC 2 cut(s) 63, 546
Eco32I GATATC 1 cut(s) 601
Eco53kI GAGCTC 1 cut(s) 544
Eco72I CACGTG 1 cut(s) 287
EcoICRI GAGCTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 229, 438
EcoRV GATATC 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 292, 552, 771
EcoT38I GRGCYC 2 cut(s) 63, 546
ErhI CCWWGG 3 cut(s) 292, 552, 771
Esp3I CGTCTC 2 cut(s) 424, 557
FaeI CATG 7 cut(s) 197, 463, 556, 674, 686, 770, 1000
FalI AAGNNNNNCTT 2 cut(s) 1085, 1117
FatI CATG 7 cut(s) 193, 459, 552, 670, 682, 766, 996
FauI CCCGC 1 cut(s) 832
FbaI TGATCA 1 cut(s) 687
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 15, 204, 1025
FokI GGATG 5 cut(s) 194, 455, 484, 1045, 1162
FriOI GRGCYC 2 cut(s) 63, 546
Fsp4HI GCNGC 3 cut(s) 15, 204, 1025
FspBI CTAG 5 cut(s) 56, 365, 795, 963, 1043
FspI TGCGCA 1 cut(s) 697
GlaI GCGC 1 cut(s) 697
GluI GCNGC 3 cut(s) 15, 204, 1025
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 2 cut(s) 557, 1130
HapII CCGG 2 cut(s) 113, 342
HhaI GCGC 1 cut(s) 698
Hin1II CATG 7 cut(s) 197, 463, 556, 674, 686, 770, 1000
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 6 cut(s) 166, 446, 526, 898, 1066, 1075
HpaII CCGG 2 cut(s) 113, 342
HphI GGTGA 4 cut(s) 523, 646, 986, 1155
Hpy166II GTNNAC 5 cut(s) 25, 103, 122, 514, 1099
Hpy188I TCNGA 5 cut(s) 75, 399, 429, 937, 950
Hpy188III TCNNGA 7 cut(s) 113, 365, 604, 740, 812, 826, 1079
Hpy8I GTNNAC 5 cut(s) 25, 103, 122, 514, 1099
Hpy99I CGWCG 1 cut(s) 563
HpyCH4III ACNGT 3 cut(s) 100, 178, 568
HpyCH4IV ACGT 4 cut(s) 118, 286, 433, 863
HpyCH4V TGCA 3 cut(s) 25, 284, 1000
HpyF10VI GCNNNNNNNGC 2 cut(s) 1113, 1150
HpyF3I CTNAG 5 cut(s) 125, 428, 540, 624, 1146
HpySE526I ACGT 4 cut(s) 118, 286, 433, 863
Hsp92II CATG 7 cut(s) 197, 463, 556, 674, 686, 770, 1000
HspAI GCGC 1 cut(s) 696
Kpn2I TCCGGA 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 687
Kzo9I GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
LguI GCTCTTC 1 cut(s) 410
LmnI GCTCC 3 cut(s) 235, 481, 633
Lsp1109I GCAGC 2 cut(s) 190, 1036
LweI GCATC 2 cut(s) 1067, 1181
MaeI CTAG 5 cut(s) 56, 365, 795, 963, 1043
MaeII ACGT 4 cut(s) 118, 286, 433, 863
MaeIII GTNAC 3 cut(s) 434, 608, 652
MalI GATC 8 cut(s) 72, 186, 396, 426, 689, 824, 987, 1156
MboI GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
MboII GAAGA 7 cut(s) 77, 80, 319, 380, 397, 658, 800
MhlI GDGCHC 5 cut(s) 8, 27, 63, 486, 546
MluCI AATT 7 cut(s) 171, 380, 580, 707, 856, 968, 1005
MlyI GAGTC 2 cut(s) 520, 892
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 5 cut(s) 60, 393, 668, 888, 1038
MroI TCCGGA 1 cut(s) 112
MseI TTAA 7 cut(s) 36, 324, 375, 416, 501, 588, 1008
MslI CAYNNNNRTG 2 cut(s) 192, 212
MspI CCGG 2 cut(s) 113, 342
MspR9I CCNGG 2 cut(s) 231, 440
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 2 cut(s) 231, 440
MwoI GCNNNNNNNGC 2 cut(s) 1113, 1150
NcoI CCATGG 1 cut(s) 552
NdeII GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
NlaIII CATG 7 cut(s) 197, 463, 556, 674, 686, 770, 1000
NlaIV GGNNCC 1 cut(s) 926
NmuCI GTSAC 3 cut(s) 434, 608, 652
NsbI TGCGCA 1 cut(s) 697
NspI RCATGY 1 cut(s) 1000
PciSI GCTCTTC 1 cut(s) 410
PctI GAATGC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 166, 446, 1066, 1075
PkrI GCNGC 3 cut(s) 16, 205, 1026
PleI GAGTC 2 cut(s) 520, 892
PmaCI CACGTG 1 cut(s) 287
PmlI CACGTG 1 cut(s) 287
PpsI GAGTC 2 cut(s) 520, 892
Ppu21I YACGTR 1 cut(s) 287
PshAI GACNNNNGTC 1 cut(s) 80
PshBI ATTAAT 1 cut(s) 324
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 2 cut(s) 229, 438
PspCI CACGTG 1 cut(s) 287
PspGI CCWGG 2 cut(s) 229, 438
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 1 cut(s) 1128
RsaI GTAC 2 cut(s) 157, 1100
RsaNI GTAC 2 cut(s) 156, 1099
RseI CAYNNNNRTG 2 cut(s) 192, 212
SacI GAGCTC 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 410
SaqAI TTAA 7 cut(s) 36, 324, 375, 416, 501, 588, 1008
SatI GCNGC 3 cut(s) 15, 204, 1025
Sau3AI GATC 8 cut(s) 70, 184, 394, 424, 687, 822, 985, 1154
Sau96I GGNCC 1 cut(s) 1128
SchI GAGTC 2 cut(s) 520, 892
ScrFI CCNGG 2 cut(s) 231, 440
SduI GDGCHC 5 cut(s) 8, 27, 63, 486, 546
SfaNI GCATC 2 cut(s) 1067, 1181
SfcI CTRYAG 1 cut(s) 99
SmiMI CAYNNNNRTG 2 cut(s) 192, 212
SmlI CTYRAG 3 cut(s) 659, 727, 1102
SmoI CTYRAG 3 cut(s) 659, 727, 1102
SpeI ACTAGT 1 cut(s) 1042
Sse9I AATT 7 cut(s) 171, 380, 580, 707, 856, 968, 1005
SsiI CCGC 2 cut(s) 679, 839
SspMI CTAG 5 cut(s) 56, 365, 795, 963, 1043
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 2 cut(s) 229, 438
StyI CCWWGG 3 cut(s) 292, 552, 771
TaaI ACNGT 3 cut(s) 100, 178, 568
TaiI ACGT 4 cut(s) 121, 289, 436, 866
TaqI TCGA 2 cut(s) 265, 825
TasI AATT 7 cut(s) 171, 380, 580, 707, 856, 968, 1005
TatI WGTACW 2 cut(s) 155, 1098
TfiI GAWTC 4 cut(s) 166, 446, 1066, 1075
Tru1I TTAA 7 cut(s) 36, 324, 375, 416, 501, 588, 1008
Tru9I TTAA 7 cut(s) 36, 324, 375, 416, 501, 588, 1008
TscAI CASTG 2 cut(s) 544, 1077
TseFI GTSAC 3 cut(s) 434, 608, 652
TseI GCWGC 3 cut(s) 14, 203, 1024
Tsp45I GTSAC 3 cut(s) 434, 608, 652
TspDTI ATGAA 4 cut(s) 459, 797, 900, 957
TspGWI ACGGA 2 cut(s) 200, 629
TspRI CASTG 2 cut(s) 544, 1077
VneI GTGCAC 1 cut(s) 23
VspI ATTAAT 1 cut(s) 324
XapI RAATTY 4 cut(s) 380, 707, 856, 968
XbaI TCTAGA 1 cut(s) 364
XceI RCATGY 1 cut(s) 1000
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 5 cut(s) 56, 365, 795, 963, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.