Rorug03G0303900

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001113
Physical Location & Seq
Reverse (-)
32157350 .. 32161200
3851 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0303900.1

Sequence Viewer

Length: 1287 bp
ATGGTCGGGCATGGCGAAAGATACAAGACCATGTTGGCAGCAAGACTGCGGTTCAGATTCGAAGTCATGCTCAGAAATTCTTTTCTAAGGTTTACTGCTCTTACTCCAGTATCCCATTTTCTGTATATCTATATCCCATGTATTGAAGTTGCTCGTGACCCAGATGGCATCAACACAAGCTCTGCAGATCCCATTGACATTCCTCCTCCTAGGCCAAAACGGAAACCAATGCGTCCTTACCCCCGAAAACGTGTTCACCCTCTTCATACAGAAACCTCTAATCTAGAGCAGCCAATAAGGTCTTCACCTAAAAAATTATCAGTTTCTGAGCTTGAAAACCAATCTCCAACATCAGTATTATCTCCAATGGGCTCAGATACAATCGGTTCCTCTGATTCAAGTACACCTAGTGGTAGTCTATCCCCTGTTTCATTGGTTGCTGGTGTCCAAAATGAGGCCATAAATCATTCTGAGCAACAGCCATCACCAGAGGAAAGTAGGACTTCATTATCAGCTGTAACAGAAGATGGCCCACTTCCTGACAAGAAATTTTCTGTGAAGCTGGAGTTATTTCCCACAGACAATGTCTGTGATAGTGGCGGTTCAGCTGATGAGGCATCTGCCAGAAGCCTTAAGCTTTTCGGAAGGACTGTATTGGTCACAGACTCCCACCGACCTTTCTCTGGTGGAACGTGCAAATCAATCTCTTATGACACGCCAGAGGAGAAATGTGGGCAAACATCAATACCATGTAACTTTATGCCTATTCAATGTGCATTTGGGAATGTGGAACATGTTTGGAATAGACATCAACTCATCCATTTTCCTCAATGTCAGAATGAGAATTGGAATCGATCTGGTTCTTCTAATCTTATACCATGGTGTACCTTAGGTGCAGATTCATCAGTTCCATTTCTTCCATTCAGTAACCAGCAGACAATGAAATCATATTTTGATTGTAACCTTGAAGATCCCCACAGTAAAGATGTTCAGAAAGAAAGTTCTTGGAACGGTTCAGATGCTGGATCAGTAAGTGATGAGGAAAATGGAGGCAAATGTTTAGATGTAGAGATGCAGGGTGATCTGCAAATTTCTGAAGAAGAAAAAGTTGAAGAGCCGAATTCGGTTTTTCAATTTAAGGCGAGTAAAAACTCAGCCTTCTCTAAACTGAAGCCTGAAAAGTGTAAAAAAGGATTTGTACCATATAAAAGATGTATGGTGGATGCAGATGCTCAGTACTCAACTTCAGGTCAAGACAGGGATCAGAAGAGAGTCCACCTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

428

Amino Acids

47.5

Weight (kDa)

6.04

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 49, 600
AclWI GGATC 4 cut(s) 182, 965, 1033, 1269
AcsI RAATTY 4 cut(s) 76, 548, 1089, 1120
AcuI CTGAAG 3 cut(s) 1116, 1190, 1230
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 4 cut(s) 403, 886, 1200, 1238
AfiI CCNNNNNNNGG 2 cut(s) 454, 683
AflII CTTAAG 1 cut(s) 632
AflIII ACRYGT 2 cut(s) 250, 793
AgsI TTSAA 7 cut(s) 146, 335, 399, 770, 968, 1112, 1133
AjuI GAANNNNNNNTTGG 2 cut(s) 286, 318
AluBI AGCT 6 cut(s) 180, 331, 515, 562, 608, 637
AluI AGCT 6 cut(s) 180, 331, 515, 562, 608, 637
AlwI GGATC 4 cut(s) 182, 965, 1033, 1269
AlwNI CAGNNNCTG 2 cut(s) 326, 1022
AoxI GGCC 3 cut(s) 212, 456, 529
ApeKI GCWGC 2 cut(s) 38, 289
ApoI RAATTY 4 cut(s) 76, 548, 1089, 1120
AspA2I CCTAGG 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 4 cut(s) 248, 297, 477, 1091
AsuII TTCGAA 1 cut(s) 60
AvrII CCTAGG 1 cut(s) 209
AxyI CCTNAGG 1 cut(s) 889
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BanII GRGCYC 1 cut(s) 374
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 294
BbvI GCAGC 2 cut(s) 50, 301
BccI CCATC 3 cut(s) 158, 490, 521
BciVI GTATCC 1 cut(s) 121
BfaI CTAG 3 cut(s) 210, 284, 408
BfmI CTRYAG 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 632
BfuI GTATCC 1 cut(s) 121
BisI GCNGC 2 cut(s) 39, 290
BlnI CCTAGG 1 cut(s) 209
BlsI GCNGC 2 cut(s) 40, 291
BmcAI AGTACT 1 cut(s) 1238
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 1 cut(s) 388
BmsI GCATC 6 cut(s) 177, 626, 1009, 1062, 1213, 1219
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 2 cut(s) 90, 584
Bpu14I TTCGAA 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 853
BsaJI CCNNGG 2 cut(s) 209, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 454, 683
Bse1I ACTGG 1 cut(s) 107
Bse21I CCTNAGG 1 cut(s) 889
BseCI ATCGAT 1 cut(s) 853
BseDI CCNNGG 2 cut(s) 209, 878
BseGI GGATG 2 cut(s) 816, 1228
BseLI CCNNNNNNNGG 2 cut(s) 454, 683
BseMII CTCAG 6 cut(s) 85, 318, 387, 462, 1167, 1247
BseNI ACTGG 1 cut(s) 107
BseRI GAGGAG 2 cut(s) 195, 737
BseXI GCAGC 2 cut(s) 50, 301
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 3 cut(s) 214, 458, 531
BshVI ATCGAT 1 cut(s) 853
BslI CCNNNNNNNGG 2 cut(s) 454, 683
BsnI GGCC 3 cut(s) 214, 458, 531
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
Bsp19I CCATGG 1 cut(s) 878
BspACI CCGC 2 cut(s) 49, 600
BspANI GGCC 3 cut(s) 214, 458, 531
BspCNI CTCAG 6 cut(s) 84, 319, 386, 463, 1166, 1246
BspDI ATCGAT 1 cut(s) 853
BspLI GGNNCC 1 cut(s) 388
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 4 cut(s) 182, 965, 1033, 1269
BspQI GCTCTTC 1 cut(s) 1107
BspT104I TTCGAA 1 cut(s) 60
BspTI CTTAAG 1 cut(s) 632
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 209, 878
BssMI GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
BssSI CACGAG 1 cut(s) 153
BssT1I CCWWGG 2 cut(s) 209, 878
Bst2BI CACGAG 1 cut(s) 153
Bst4CI ACNGT 3 cut(s) 652, 980, 1013
Bst6I CTCTTC 3 cut(s) 267, 1107, 1262
BstAFI CTTAAG 1 cut(s) 632
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 8 cut(s) 71, 86, 327, 373, 471, 889, 1153, 1233
BstDSI CCRYGG 1 cut(s) 878
BstF5I GGATG 2 cut(s) 816, 1228
BstKTI GATC 6 cut(s) 190, 857, 973, 1028, 1084, 1264
BstMBI GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 797
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 50, 301
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 2 cut(s) 187, 970
BstYI RGATCY 2 cut(s) 187, 970
Bsu15I ATCGAT 1 cut(s) 853
Bsu36I CCTNAGG 1 cut(s) 889
BsuI GTATCC 1 cut(s) 121
BsuRI GGCC 3 cut(s) 214, 458, 531
BsuTUI ATCGAT 1 cut(s) 853
BtgI CCRYGG 1 cut(s) 878
BtsCI GGATG 2 cut(s) 816, 1228
CaiI CAGNNNCTG 2 cut(s) 326, 1022
Cfr13I GGNCC 1 cut(s) 530
ClaI ATCGAT 1 cut(s) 853
CseI GACGC 1 cut(s) 221
Csp6I GTAC 4 cut(s) 402, 885, 1199, 1237
CviAII CATG 7 cut(s) 11, 31, 67, 138, 750, 794, 879
CviQI GTAC 4 cut(s) 402, 885, 1199, 1237
DdeI CTNAG 8 cut(s) 71, 86, 327, 373, 471, 889, 1153, 1233
DpnI GATC 6 cut(s) 189, 856, 972, 1027, 1083, 1263
DpnII GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
DraIII CACNNNGTG 1 cut(s) 410
Eam1104I CTCTTC 3 cut(s) 267, 1107, 1262
EarI CTCTTC 3 cut(s) 267, 1107, 1262
Eco130I CCWWGG 2 cut(s) 209, 878
Eco24I GRGCYC 1 cut(s) 374
Eco57I CTGAAG 3 cut(s) 1116, 1190, 1230
Eco81I CCTNAGG 1 cut(s) 889
EcoRI GAATTC 1 cut(s) 1120
EcoT14I CCWWGG 2 cut(s) 209, 878
EcoT38I GRGCYC 1 cut(s) 374
ErhI CCWWGG 2 cut(s) 209, 878
FaeI CATG 7 cut(s) 14, 34, 70, 141, 753, 797, 882
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FatI CATG 7 cut(s) 10, 30, 66, 137, 749, 793, 878
Fnu4HI GCNGC 2 cut(s) 39, 290
FokI GGATG 2 cut(s) 803, 1235
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 39, 290
FspBI CTAG 3 cut(s) 210, 284, 408
GluI GCNGC 2 cut(s) 39, 290
GsuI CTGGAG 2 cut(s) 90, 584
HaeIII GGCC 3 cut(s) 214, 458, 531
HgaI GACGC 1 cut(s) 221
Hin1II CATG 7 cut(s) 14, 34, 70, 141, 753, 797, 882
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 6 cut(s) 57, 395, 665, 850, 899, 1272
HphI GGTGA 4 cut(s) 248, 297, 477, 1091
Hpy166II GTNNAC 5 cut(s) 93, 256, 404, 885, 1276
Hpy188III TCNNGA 4 cut(s) 155, 284, 539, 1253
Hpy8I GTNNAC 5 cut(s) 93, 256, 404, 885, 1276
HpyAV CCTTC 2 cut(s) 639, 1168
HpyCH4III ACNGT 3 cut(s) 652, 980, 1013
HpyCH4IV ACGT 2 cut(s) 250, 692
HpyCH4V TGCA 7 cut(s) 185, 696, 776, 896, 1075, 1087, 1226
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 8 cut(s) 71, 86, 327, 373, 471, 889, 1153, 1233
HpySE526I ACGT 2 cut(s) 250, 692
Hsp92II CATG 7 cut(s) 14, 34, 70, 141, 753, 797, 882
Kzo9I GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
LguI GCTCTTC 1 cut(s) 1107
Lsp1109I GCAGC 2 cut(s) 50, 301
LweI GCATC 6 cut(s) 177, 626, 1009, 1062, 1213, 1219
MaeI CTAG 3 cut(s) 210, 284, 408
MaeII ACGT 2 cut(s) 250, 692
MaeIII GTNAC 6 cut(s) 155, 517, 658, 752, 926, 959
MalI GATC 6 cut(s) 189, 856, 972, 1027, 1083, 1263
MboI GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
MflI RGATCY 2 cut(s) 187, 970
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 7 cut(s) 76, 314, 548, 844, 1089, 1120, 1133
MlyI GAGTC 2 cut(s) 659, 1281
MmeI TCCRAC 1 cut(s) 371
MseI TTAA 2 cut(s) 633, 1137
MspA1I CMGCKG 2 cut(s) 515, 608
MspCI CTTAAG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 614
NcoI CCATGG 1 cut(s) 878
NdeII GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
NlaIII CATG 7 cut(s) 14, 34, 70, 141, 753, 797, 882
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 2 cut(s) 155, 658
NspI RCATGY 1 cut(s) 797
NspV TTCGAA 1 cut(s) 60
PciI ACATGT 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 12
PfeI GAWTC 4 cut(s) 57, 395, 850, 899
PflFI GACNNNGTC 1 cut(s) 584
PkrI GCNGC 2 cut(s) 40, 291
PleI GAGTC 2 cut(s) 659, 1280
PpsI GAGTC 2 cut(s) 659, 1280
PscI ACATGT 1 cut(s) 793
PspN4I GGNNCC 1 cut(s) 388
PspPI GGNCC 1 cut(s) 530
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 2 cut(s) 326, 1022
PsuI RGATCY 2 cut(s) 187, 970
PsyI GACNNNGTC 1 cut(s) 584
PvuII CAGCTG 2 cut(s) 515, 608
RsaI GTAC 4 cut(s) 403, 886, 1200, 1238
RsaNI GTAC 4 cut(s) 402, 885, 1199, 1237
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 2 cut(s) 633, 1137
SatI GCNGC 2 cut(s) 39, 290
Sau3AI GATC 6 cut(s) 187, 854, 970, 1025, 1081, 1261
Sau96I GGNCC 1 cut(s) 530
ScaI AGTACT 1 cut(s) 1238
SchI GAGTC 2 cut(s) 659, 1281
SduI GDGCHC 1 cut(s) 374
SfaNI GCATC 6 cut(s) 177, 626, 1009, 1062, 1213, 1219
SfcI CTRYAG 1 cut(s) 183
SfuI TTCGAA 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 7 cut(s) 76, 314, 548, 844, 1089, 1120, 1133
SsiI CCGC 2 cut(s) 49, 600
SspMI CTAG 3 cut(s) 210, 284, 408
StyI CCWWGG 2 cut(s) 209, 878
TaaI ACNGT 3 cut(s) 652, 980, 1013
TaiI ACGT 2 cut(s) 253, 695
TaqI TCGA 2 cut(s) 60, 853
TasI AATT 7 cut(s) 76, 314, 548, 844, 1089, 1120, 1133
TatI WGTACW 2 cut(s) 401, 1236
TfiI GAWTC 4 cut(s) 57, 395, 850, 899
Tru1I TTAA 2 cut(s) 633, 1137
Tru9I TTAA 2 cut(s) 633, 1137
TseFI GTSAC 2 cut(s) 155, 658
TseI GCWGC 2 cut(s) 38, 289
Tsp45I GTSAC 2 cut(s) 155, 658
TspDTI ATGAA 5 cut(s) 254, 420, 495, 891, 956
TspGWI ACGGA 1 cut(s) 235
Tth111I GACNNNGTC 1 cut(s) 584
Vha464I CTTAAG 1 cut(s) 632
XapI RAATTY 4 cut(s) 76, 548, 1089, 1120
XbaI TCTAGA 1 cut(s) 283
XceI RCATGY 1 cut(s) 797
XmaJI CCTAGG 1 cut(s) 209
XspI CTAG 3 cut(s) 210, 284, 408
ZrmI AGTACT 1 cut(s) 1238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.