FvH4_2g19160

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001113
Physical Location & Seq
Reverse (-)
16323923 .. 16330582
6660 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19160.t1

Sequence Viewer

Length: 2307 bp
ATGGCGCAGAGTAATTGGGAAGCGGATAAGATGCTTGATGTCTATATTCATGATTATTTGTTGAAAAGGAAATTGACTGCTTCTGCAAATACATTTATGAACGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCGGGTGGATTCCTCTTTGAATGGTGGTCTGTATTCTGGGACATATTCATTGCACGGACAAATGAGAAGCACTCAGAGGCTGCTGCAGCTTACATTGAGGCACAACAAATTAAGACAAGGGAGCAACAACAGTTGCAAATGCAGCAGATGCAGATATTACAGCAGCGCAATGCTCAACTACAGCGTAGAGATCCTAGTGCTTTAAATGCTATGAACTCTGAAGGGGTAATGGGGCAACCTTCAGCTAGTGTGCTGGCGATGAAAATGTATGAAGAACGCATGAAACACCCTCACTCGATGGATTCTGAAGCATCCCCAGGTCTTACTGATACCAATAGGATTGCCCTTCTCAAATCAGCTACAAATGCACAAGGCCAGTTGACACAAAACAATTCTGGAAACATGTCTGCTGCTTTGCAGCAAATGCAAGCACGCAATCCTTTGACCACTGACATCAAAAGTGAAGTTAACTTAGGTGCAACTCAGAGAAGTTTGCCTATGGATCCTTCATCAATTTATGGACAAGCAATTATACAGTCGAAATCCGGTTTTGGTGGTGCAGGATTGAATCAAGGTGTTACAGGTCTTCCTTTGAAGGGTTGGCCTCTTACTGGAATCGACCAATTACGTCCAAACTTGGGAGTACAAGTACAGAAGTCAAATTTTCAGACCCAAAATCAATTCCTTTTAGCACCTCAACAACAACAAGTCTTGGCACAAGCCCAGATTCAGGCACAAAACAGCCTTGGAAATTCAACAAGCTATGGAGATATGGATCCTCGTAGGTTTTCTGGATTACCTAGGAGTGGCATGAATGCAAAAGATGGTCAATCTCCAATGCAATCAAGTTCACCAAAGATTAAAATGCCTCAGATGCAACAGTCTTCCTCCCAACAACACGACCAATTGCAGCAGCAGCCATTACAACAGAATAACAGAAAAAGGAAACAACACTCTTCTTCTGGACCTGCCAACAGCAACAACACAGGGAATACTGTGGGCCGTTCACCTGGTTCTCCAGCATCAACTCACACACCAGGTGATGGAATTAACACAGCGAGTAGTCTGCAGCGTGTTAACAACATTCCCAAAAGCATGATGATGTATGGCGAAGGAGCAGGAGGTCTTCCTTCGTCTTCCCATTTATTGGAAGATATGGAACGATTTGGAGATGTTGGTACCTTAGAAGATAATGTGGAATCGTTTTTGTCACCTGATGGGGCCGACGGGAGAGATCTATATGGGACACTGAAGCAGAGTCCTAGTGAGCAACGAAAGGAGTCTTCTAAAGGTTTTACCTTTGGTGAAGTTGGTTGCATAAGGACCAGAAGCAGCAAAGTTACCTGCTGTCACTTTTCTTCAGATGGGAAGTTGCTGGCTAGCGCTGGACATGACAAAAAGGTTGTCCTCTGGAACATGGATACCCTGCAGACAGAAAGCACTCCAGAAGAACACAAGTTGGTCATTACAGATGTTCGCTTTAGACCAAATTCAACTCAGCTGGCAACATCTTCAGTTGACAAAACTGTGCGATTATGGGATGCAGCCAATCCAAACTTTTGTTTGCAAGCATATACAGGACATAACTCACCTGTTATGTCCCTTGACTTCAACCCTAAGAAGACGGATTTATTTTGTTTCTGTGATAGTGACAATGAAATTCGTTACTGGAATATTAATCCATTCTCCTGTGCTCGTATTTCGAAGGGAGCTACTGCACAAGTTAGGTTTCAACCAAGAATTGGACAACTACTGGCAGCAGCATCAGATAAAGTTGTTTCCATCTTTGATGTTGAAACTGACAGGCAAATACACTCATTCCAGGGGCACTCTGAAATGGTAAACTACATTTGTTGGGATGCAAATGGAGATTATGTGGCATCTGTCAGTCAAAGTTTGGTGAAAATTTGGTCGTCAGCTTCAGGACAGTGTATTCAGGAGCTTGGCTCTAATGGGAACCAGTTCCACTCGTGCGTTTTTCATCCAAGTTATTCAACTCTCTTGGTCATTGGAGGAATCTCGTCCTTGGAGCTGTGGAACATGGCAGAGAATAAGAGCATGACTATTCCAGCACATGAGAATATAATCTCAGCTCTGGCTCAATCACCTGACACCGGAATGGTTGCATCTGCAAGTCATGATAGCTCCGTCAAGTTATGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

769

Amino Acids

84.19

Weight (kDa)

6.66

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_TEP1_2nd PF25047 481 - 584 3.8e-13 TEP-1 second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 483 - 684 1.3e-14 MABP1/WDR62 second WD40 domain
EIF3I PF24805 485 - 564 2.5e-07 EIF3I
WD40_Prp19 PF24814 489 - 761 1.8e-36 Prp19 WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 489 - 592 7.2e-08 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR5 PF25175 489 - 614 1.7e-26 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 491 - 606 3.2e-22 WDR3 first beta-propeller domain
WD40 PF00400 491 - 519 6.9e-07 WD domain, G-beta repeat
WD40_Gbeta PF25391 491 - 605 7e-10 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 491 - 617 1.6e-14 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 491 - 564 2.3e-15 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 491 - 565 1.5e-11 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 491 - 588 4.8e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2 PF23414 491 - 608 1e-13 Echinoderm microtubule-associated protein second beta-propeller
WD40_CDC20-Fz PF24807 524 - 678 1.2e-14 CDC20/Fizzy WD40 domain
WD40 PF00400 528 - 561 2.4e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 532 - 612 3.2e-13 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 567 - 678 2.6e-08 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 572 - 716 1.4e-13 WDHD1 first WD40 domain
B-prop_COPA_B_2nd PF04053 592 - 705 3.2e-07 COPA/B second beta-propeller
Beta-prop_WDR36-Utp21_2nd PF25168 596 - 693 1.6e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 599 - 766 4.5e-08 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 615 - 690 2.8e-06 Echinoderm microtubule-associated protein second beta-propeller
WDR55 PF24796 615 - 733 7.5e-06 WDR55
Beta-prop_WDR5 PF25175 616 - 767 5.4e-26 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 617 - 768 1.6e-17 WDR3 first beta-propeller domain
Beta-prop_THOC3 PF25174 620 - 767 7.4e-22 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 626 - 767 4.2e-12 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 630 - 746 4.8e-06 G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd PF25172 662 - 768 1.6e-10 WDR3 second beta-propeller domain
WD40 PF00400 733 - 767 4.3e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1117, 1493
Acc65I GGTACC 1 cut(s) 1319
AccB1I GGYRCC 1 cut(s) 1319
AccB7I CCANNNNNTGG 3 cut(s) 1184, 1288, 1883
AciI CCGC 1 cut(s) 23
AclWI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
AcsI RAATTY 5 cut(s) 802, 892, 1630, 1800, 2046
AcuI CTGAAG 7 cut(s) 366, 381, 468, 1412, 1485, 1638, 2046
AdeI CACNNNGTG 2 cut(s) 146, 1181
AfaI GTAC 3 cut(s) 786, 792, 1321
AfeI AGCGCT 1 cut(s) 1525
AfiI CCNNNNNNNGG 9 cut(s) 737, 752, 779, 871, 947, 1184, 1288, 1883, 2255
AflIII ACRYGT 1 cut(s) 543
AjnI CCWGG 4 cut(s) 457, 1150, 1177, 1962
Alw21I GWGCWC 1 cut(s) 1837
AlwI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
AlwNI CAGNNNCTG 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 1525
AoxI GGCC 4 cut(s) 514, 743, 1141, 1362
ApoI RAATTY 5 cut(s) 802, 892, 1630, 1800, 2046
ArsI GACNNNNNNTTYG 2 cut(s) 1530, 1562
AseI ATTAAT 1 cut(s) 1818
Asp700I GAANNNNTTC 1 cut(s) 2102
Asp718I GGTACC 1 cut(s) 1319
AspA2I CCTAGG 1 cut(s) 941
AspLEI GCGC 3 cut(s) 7, 309, 1526
AspS9I GGNCC 4 cut(s) 1106, 1141, 1362, 1464
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 8 cut(s) 984, 1140, 1193, 1344, 1457, 1722, 2053, 2238
AsuII TTCGAA 1 cut(s) 1844
AsuNHI GCTAGC 1 cut(s) 1520
AvaII GGWCC 2 cut(s) 1106, 1464
AvrII CCTAGG 1 cut(s) 941
BaeGI GKGCMC 1 cut(s) 1971
BamHI GGATCC 2 cut(s) 643, 916
BanI GGYRCC 1 cut(s) 1319
BauI CACGAG 1 cut(s) 2110
BbsI GAAGAC 6 cut(s) 719, 1017, 1259, 1269, 1416, 1769
Bbv12I GWGCWC 1 cut(s) 1837
BccI CCATC 6 cut(s) 433, 959, 1178, 1352, 1499, 1931
BceAI ACGGC 1 cut(s) 1128
BcgI CGANNNNNNTGC 2 cut(s) 1189, 1223
BciT130I CCWGG 4 cut(s) 459, 1152, 1179, 1964
BciVI GTATCC 1 cut(s) 1555
BcnI CCSGG 1 cut(s) 144
BfaI CTAG 5 cut(s) 336, 387, 942, 1404, 1521
BfmI CTRYAG 5 cut(s) 117, 225, 320, 1208, 1568
BfoI RGCGCY 1 cut(s) 1527
BfuAI ACCTGC 2 cut(s) 1117, 1493
BfuI GTATCC 1 cut(s) 1555
BglII AGATCT 1 cut(s) 1375
BlnI CCTAGG 1 cut(s) 941
Bme1390I CCNGG 5 cut(s) 144, 459, 1152, 1179, 1964
Bme18I GGWCC 2 cut(s) 1106, 1464
BmgT120I GGNCC 4 cut(s) 1106, 1141, 1362, 1464
BmiI GGNNCC 5 cut(s) 645, 918, 1321, 1363, 2099
BmrFI CCNGG 5 cut(s) 144, 459, 1152, 1179, 1964
BmtI GCTAGC 1 cut(s) 1524
BpiI GAAGAC 6 cut(s) 719, 1017, 1259, 1269, 1416, 1769
BplI GAGNNNNNCTC 4 cut(s) 197, 229, 2072, 2104
BpmI CTGGAG 2 cut(s) 1143, 1569
Bpu14I TTCGAA 1 cut(s) 1844
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 915
BsaJI CCNNGG 5 cut(s) 457, 886, 941, 1963, 2166
BsaWI WCCGGW 2 cut(s) 686, 2255
BsaXI ACNNNNNCTCC 4 cut(s) 774, 804, 2001, 2031
Bsc4I CCNNNNNNNGG 9 cut(s) 737, 752, 779, 871, 947, 1184, 1288, 1883, 2255
Bse1I ACTGG 6 cut(s) 125, 517, 757, 1814, 1899, 2101
Bse3DI GCAATG 2 cut(s) 189, 316
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 4 cut(s) 459, 1152, 1179, 1964
BseDI CCNNGG 5 cut(s) 457, 886, 941, 1963, 2166
BseGI GGATG 4 cut(s) 452, 1687, 2005, 2122
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 9 cut(s) 737, 752, 779, 871, 947, 1184, 1288, 1883, 2255
BseMI GCAATG 2 cut(s) 189, 316
BseMII CTCAG 5 cut(s) 228, 638, 1025, 1652, 2244
BseNI ACTGG 6 cut(s) 125, 517, 757, 1814, 1899, 2101
BseSI GKGCMC 1 cut(s) 1971
BsgI GTGCAG 2 cut(s) 720, 1842
BshFI GGCC 4 cut(s) 516, 745, 1143, 1364
BshNI GGYRCC 1 cut(s) 1319
BsiHKAI GWGCWC 1 cut(s) 1837
BsiSI CCGG 3 cut(s) 143, 687, 2256
BslFI GGGAC 3 cut(s) 194, 1399, 1726
BslI CCNNNNNNNGG 9 cut(s) 737, 752, 779, 871, 947, 1184, 1288, 1883, 2255
BsmFI GGGAC 3 cut(s) 194, 1399, 1726
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 4 cut(s) 516, 745, 1143, 1364
Bsp119I TTCGAA 1 cut(s) 1844
Bsp1286I GDGCHC 2 cut(s) 1837, 1971
Bsp143I GATC 5 cut(s) 121, 331, 643, 916, 1375
BspACI CCGC 1 cut(s) 23
BspANI GGCC 4 cut(s) 516, 745, 1143, 1364
BspCNI CTCAG 5 cut(s) 227, 637, 1024, 1651, 2243
BspHI TCATGA 2 cut(s) 49, 2278
BspLI GGNNCC 5 cut(s) 645, 918, 1321, 1363, 2099
BspMAI CTGCAG 3 cut(s) 229, 1212, 1572
BspMI ACCTGC 2 cut(s) 1117, 1493
BspOI GCTAGC 1 cut(s) 1524
BspPI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
BspT104I TTCGAA 1 cut(s) 1844
BspT107I GGYRCC 1 cut(s) 1319
BsrDI GCAATG 2 cut(s) 189, 316
BsrI ACTGG 6 cut(s) 125, 517, 757, 1814, 1899, 2101
BssECI CCNNGG 5 cut(s) 457, 886, 941, 1963, 2166
BssMI GATC 5 cut(s) 121, 331, 643, 916, 1375
BssSI CACGAG 1 cut(s) 2110
BssT1I CCWWGG 3 cut(s) 886, 941, 2166
Bst2BI CACGAG 1 cut(s) 2110
Bst2UI CCWGG 4 cut(s) 459, 1152, 1179, 1964
Bst4CI ACNGT 6 cut(s) 273, 678, 1023, 1138, 1669, 2070
Bst6I CTCTTC 1 cut(s) 1102
BstAPI GCANNNNNTGC 3 cut(s) 137, 289, 565
BstBI TTCGAA 1 cut(s) 1844
BstC8I GCNNGC 7 cut(s) 396, 570, 574, 1518, 1522, 1644, 1710
BstDEI CTNAG 8 cut(s) 214, 613, 624, 1011, 1324, 1638, 1758, 2230
BstF5I GGATG 4 cut(s) 452, 1687, 2005, 2122
BstH2I RGCGCY 1 cut(s) 1527
BstHHI GCGC 3 cut(s) 7, 309, 1526
BstKTI GATC 5 cut(s) 124, 334, 646, 919, 1378
BstMBI GATC 5 cut(s) 121, 331, 643, 916, 1375
BstMWI GCNNNNNNNGC 9 cut(s) 137, 227, 283, 289, 347, 506, 565, 1015, 1057
BstNI CCWGG 4 cut(s) 459, 1152, 1179, 1964
BstNSI RCATGY 1 cut(s) 547
BstSCI CCNGG 5 cut(s) 142, 457, 1150, 1177, 1962
BstSFI CTRYAG 5 cut(s) 117, 225, 320, 1208, 1568
BstSLI GKGCMC 1 cut(s) 1971
BstV2I GAAGAC 6 cut(s) 719, 1017, 1259, 1269, 1416, 1769
BstX2I RGATCY 5 cut(s) 121, 331, 643, 916, 1375
BstYI RGATCY 5 cut(s) 121, 331, 643, 916, 1375
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 4 cut(s) 516, 745, 1143, 1364
BtgZI GCGATG 1 cut(s) 413
BtsCI GGATG 4 cut(s) 452, 1687, 2005, 2122
BtsIMutI CAGTG 3 cut(s) 588, 1388, 2075
BveI ACCTGC 2 cut(s) 1117, 1493
Cac8I GCNNGC 7 cut(s) 396, 570, 574, 1518, 1522, 1644, 1710
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 2 cut(s) 49, 2278
CfoI GCGC 3 cut(s) 7, 309, 1526
Cfr13I GGNCC 4 cut(s) 1106, 1141, 1362, 1464
CsiI ACCWGGT 2 cut(s) 1150, 1177
Csp6I GTAC 3 cut(s) 785, 791, 1320
CviQI GTAC 3 cut(s) 785, 791, 1320
DdeI CTNAG 8 cut(s) 214, 613, 624, 1011, 1324, 1638, 1758, 2230
DpnI GATC 5 cut(s) 123, 333, 645, 918, 1377
DpnII GATC 5 cut(s) 121, 331, 643, 916, 1375
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 2 cut(s) 146, 1181
Eam1104I CTCTTC 1 cut(s) 1102
EarI CTCTTC 1 cut(s) 1102
Eco130I CCWWGG 3 cut(s) 886, 941, 2166
Eco47I GGWCC 2 cut(s) 1106, 1464
Eco47III AGCGCT 1 cut(s) 1525
Eco57I CTGAAG 7 cut(s) 366, 381, 468, 1412, 1485, 1638, 2046
EcoRII CCWGG 4 cut(s) 457, 1150, 1177, 1962
EcoT14I CCWWGG 3 cut(s) 886, 941, 2166
ErhI CCWWGG 3 cut(s) 886, 941, 2166
FaqI GGGAC 3 cut(s) 194, 1399, 1726
FokI GGATG 4 cut(s) 439, 1694, 2012, 2109
FspBI CTAG 5 cut(s) 336, 387, 942, 1404, 1521
GlaI GCGC 3 cut(s) 6, 308, 1525
GsuI CTGGAG 2 cut(s) 1143, 1569
HaeII RGCGCY 1 cut(s) 1527
HaeIII GGCC 4 cut(s) 516, 745, 1143, 1364
HapII CCGG 3 cut(s) 143, 687, 2256
HhaI GCGC 3 cut(s) 7, 309, 1526
Hin6I GCGC 3 cut(s) 5, 307, 1524
HinP1I GCGC 3 cut(s) 5, 307, 1524
HincII GTYRAC 4 cut(s) 522, 610, 1219, 1660
HindII GTYRAC 4 cut(s) 522, 610, 1219, 1660
HinfI GANTC 9 cut(s) 150, 443, 709, 756, 868, 1340, 1399, 1421, 2157
HpaI GTTAAC 2 cut(s) 610, 1219
HpaII CCGG 3 cut(s) 143, 687, 2256
HphI GGTGA 8 cut(s) 984, 1140, 1193, 1344, 1457, 1722, 2053, 2238
Hpy166II GTNNAC 7 cut(s) 522, 610, 992, 1148, 1219, 1660, 1984
Hpy188I TCNGA 9 cut(s) 217, 361, 448, 627, 810, 1014, 1504, 1909, 1975
Hpy188III TCNNGA 9 cut(s) 50, 537, 933, 1104, 1552, 1586, 2064, 2078, 2279
Hpy8I GTNNAC 7 cut(s) 522, 610, 992, 1148, 1219, 1660, 1984
Hpy99I CGWCG 1 cut(s) 1370
HpyCH4III ACNGT 6 cut(s) 273, 678, 1023, 1138, 1669, 2070
HpyCH4IV ACGT 1 cut(s) 769
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 227, 283, 289, 347, 506, 565, 1015, 1057
HpyF3I CTNAG 8 cut(s) 214, 613, 624, 1011, 1324, 1638, 1758, 2230
HpySE526I ACGT 1 cut(s) 769
HspAI GCGC 3 cut(s) 5, 307, 1524
KpnI GGTACC 1 cut(s) 1323
KspAI GTTAAC 2 cut(s) 610, 1219
Kzo9I GATC 5 cut(s) 121, 331, 643, 916, 1375
LmnI GCTCC 6 cut(s) 262, 1256, 1850, 2080, 2170, 2291
MabI ACCWGGT 2 cut(s) 1150, 1177
MaeI CTAG 5 cut(s) 336, 387, 942, 1404, 1521
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 6 cut(s) 718, 1350, 1480, 1490, 1790, 1805
MalI GATC 5 cut(s) 123, 333, 645, 918, 1377
MboI GATC 5 cut(s) 121, 331, 643, 916, 1375
MfeI CAATTG 2 cut(s) 132, 1046
MflI RGATCY 5 cut(s) 121, 331, 643, 916, 1375
MhlI GDGCHC 2 cut(s) 1837, 1971
MlyI GAGTC 2 cut(s) 1408, 1430
MroXI GAANNNNTTC 1 cut(s) 2102
MseI TTAA 7 cut(s) 252, 344, 609, 1002, 1191, 1218, 1818
MslI CAYNNNNRTG 2 cut(s) 1241, 2258
MspA1I CMGCKG 1 cut(s) 1642
MspI CCGG 3 cut(s) 143, 687, 2256
MspR9I CCNGG 5 cut(s) 144, 459, 1152, 1179, 1964
MunI CAATTG 2 cut(s) 132, 1046
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 4 cut(s) 459, 1152, 1179, 1964
MwoI GCNNNNNNNGC 9 cut(s) 137, 227, 283, 289, 347, 506, 565, 1015, 1057
NciI CCSGG 1 cut(s) 144
NdeII GATC 5 cut(s) 121, 331, 643, 916, 1375
NheI GCTAGC 1 cut(s) 1520
NlaIV GGNNCC 5 cut(s) 645, 918, 1321, 1363, 2099
NmuCI GTSAC 3 cut(s) 1350, 1490, 1790
NspI RCATGY 1 cut(s) 547
NspV TTCGAA 1 cut(s) 1844
PagI TCATGA 2 cut(s) 49, 2278
PciI ACATGT 1 cut(s) 543
PctI GAATGC 1 cut(s) 961
PdmI GAANNNNTTC 1 cut(s) 2102
PfeI GAWTC 7 cut(s) 150, 443, 709, 756, 868, 1340, 2157
PflMI CCANNNNNTGG 3 cut(s) 1184, 1288, 1883
PleI GAGTC 2 cut(s) 1407, 1429
PpsI GAGTC 2 cut(s) 1407, 1429
PscI ACATGT 1 cut(s) 543
PshBI ATTAAT 1 cut(s) 1818
Psp6I CCWGG 4 cut(s) 457, 1150, 1177, 1962
PspGI CCWGG 4 cut(s) 457, 1150, 1177, 1962
PspN4I GGNNCC 5 cut(s) 645, 918, 1321, 1363, 2099
PspPI GGNCC 4 cut(s) 1106, 1141, 1362, 1464
PstI CTGCAG 3 cut(s) 229, 1212, 1572
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 5 cut(s) 121, 331, 643, 916, 1375
PvuII CAGCTG 1 cut(s) 1642
RsaI GTAC 3 cut(s) 786, 792, 1321
RsaNI GTAC 3 cut(s) 785, 791, 1320
RseI CAYNNNNRTG 2 cut(s) 1241, 2258
SaqAI TTAA 7 cut(s) 252, 344, 609, 1002, 1191, 1218, 1818
Sau3AI GATC 5 cut(s) 121, 331, 643, 916, 1375
Sau96I GGNCC 4 cut(s) 1106, 1141, 1362, 1464
SchI GAGTC 2 cut(s) 1408, 1430
ScrFI CCNGG 5 cut(s) 144, 459, 1152, 1179, 1964
SduI GDGCHC 2 cut(s) 1837, 1971
SexAI ACCWGGT 2 cut(s) 1150, 1177
SfcI CTRYAG 5 cut(s) 117, 225, 320, 1208, 1568
SfuI TTCGAA 1 cut(s) 1844
SinI GGWCC 2 cut(s) 1106, 1464
SmiMI CAYNNNNRTG 2 cut(s) 1241, 2258
SsiI CCGC 1 cut(s) 23
SspI AATATT 1 cut(s) 1816
SspMI CTAG 5 cut(s) 336, 387, 942, 1404, 1521
StyD4I CCNGG 5 cut(s) 142, 457, 1150, 1177, 1962
StyI CCWWGG 3 cut(s) 886, 941, 2166
TaaI ACNGT 6 cut(s) 273, 678, 1023, 1138, 1669, 2070
TaiI ACGT 1 cut(s) 772
TaqI TCGA 4 cut(s) 437, 680, 759, 1844
TatI WGTACW 2 cut(s) 784, 790
TfiI GAWTC 7 cut(s) 150, 443, 709, 756, 868, 1340, 2157
Tru1I TTAA 7 cut(s) 252, 344, 609, 1002, 1191, 1218, 1818
Tru9I TTAA 7 cut(s) 252, 344, 609, 1002, 1191, 1218, 1818
TscAI CASTG 3 cut(s) 595, 1395, 2075
TseFI GTSAC 3 cut(s) 1350, 1490, 1790
Tsp45I GTSAC 3 cut(s) 1350, 1490, 1790
TspGWI ACGGA 3 cut(s) 211, 1781, 2278
TspRI CASTG 3 cut(s) 595, 1395, 2075
Van91I CCANNNNNTGG 3 cut(s) 1184, 1288, 1883
VpaK11BI GGWCC 2 cut(s) 1106, 1464
VspI ATTAAT 1 cut(s) 1818
XapI RAATTY 5 cut(s) 802, 892, 1630, 1800, 2046
XceI RCATGY 1 cut(s) 547
XmaJI CCTAGG 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 2102
XspI CTAG 5 cut(s) 336, 387, 942, 1404, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.