Rroxscaffold_5G00333590

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001113
Physical Location & Seq
Forward (+)
1016840 .. 1024260
7421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00333590.1

Sequence Viewer

Length: 2307 bp
ATGTTCAAATTGCCCTGCTCACTTCACTCACTCCCTAAAACATGGGAATGTTTGGAACTCCATGGACTTGGTAGTGATCACAATTCAGTGAATTCACTAAACCCACCTCTCATCTCTCAATTCCCAATTCCCAATTCCCAACACTTGCAATTTTGGGCCGAGTGTCCATCAAAAACAATTCCGGCACCAAATGCTTCATCCACGACGACGATTGTAGCCTCTGATCCATCAATTTCCTCCTCCCCAGTTTGGCTTGTATTTGACCTCAAGAAATGGCCCAGAGTAATTGGGAAGCAGATAAGATGTACCTACTTCACTGTGCTTGATGTGTACATTTACGATTATCTAATGAAGAAAGAATTGCATGCCACTGCTAAGTCTTTCATGACCGAAGGGAAGGTTGCGCCCGATCCAGTAGCCATTGATGCGCCTGGAGGGTTTCTTTTTGAATGGTGGTCTGTCTTCTGGGACATTTTTATTGCAAGGACAAATGATAAACATTCCGAGTCTGCGGCAGTTTATATAGAGGCACAACAAATTAAAACAAAAGAGCAACAGCAGCTGCAAATGCAGCAGTTGCAACTAATGCGCCAAGCTCAGTTGCAAAGAAATCCTACTAATCCTCCCCTTGGTGGTCCACTAAATTCACTAAGTTCTGAAGGAATGCTTGGGCAATCTACTACTAGTGCATTGGCTGCAAAAATGTATGAGGAACGTATGAAACACCCCAATCAAATAGATTCAGAGACATCCCAACCACTCCTCGATGCTAGAGTGGCCCTGCTGAAATCAACAACAAACCATCCTGGTCAGTTGGTTCAAGGAAACCCTGGTAGTGTTAATGCGGCATTACAACAAATCCAAGCTCGAAGTCAACAGACTGCTGACATAAAGAGTGAAGTTAACATGGTTGCCTCTCAGAGATCTTTGCCTGTGGATTCTTCAATTTATGCACAAGGAATGATGCAGCCAAGACCAGGAATAGGAAATGCAGGTTTGAACCCAGGAGTCGGTGGTCTTCCATTAAAGGGATGGCCCTTAACAGGCATCGACCAAATGCGGCCAGGTTTAGGTGCACAAGTTCAAAAACCTTTCTTGCAAGGTGCAACACAGTTTCAGATCCTCTCACAGCAACAACAACAGCTTTTAGCACAGGTTCAGACTCAAGGCAATGTTGGTAGCACGCCTGGCTATGGAGATATGAGGGGATTGCCCAGGGGAAATTTAAATTCTAAAGATGGCCAATCTATCACAAACAATGGATCTCTAGGTTCTCCTATGCAAACAACTTCGCAGATAAACATGCCACAGATGCAACACTCTTCTTCTCAACAACAGGATCCTTTGCAGCCTCAGCAAGTACAGCAGAATAACCGCAAAAGGAAAGGGCCTTCATCCTCTGGAGCTGCTAACAGTACCGGTACAGGAAATACAGTTGGTCCTTCATCTAATTCCCAACCATCAACTCCATCCACTCATACACCTGGAGACGGAATTGCTATGGCTGGAAATTTTCCGAATGCTAGCAACGTTCCGAAAAGTTTGATGATGTATGGCACGGATGGAACAGGTGGCCTTGCATCATCCACAAATCAGCTGGAAGACATTGACCAATTTGGAGATGTTGGTTCCCTAGAGGACAATGTGGAATCCTTTTTGTCACATGATGATGGAGATGGAAGGGATTTGTTTGGTACATTGAACCGGAACCCTGCACATTCCACAGAAGCTTCAAAGGATTTTTCCTTCAAAGAAGTCGATTCAATTTGTAAAAGTAGTAGCAAAGTTGTCTGCTGTCACTTCTCTTCAGATGGAAAATTATTGGCCAGTGCTGGACATGACAAGAAGGGAGGTTCTTCACAGGTGAGGTTCCAGCCAAGAATTGGACAATATATGGCTGCAGCATCTGGGAATGTTGTGTCAATATTCGATGCTGAGAGTGATAGGCAGACACATTCACTGCAGGGCCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGGAGATTATTTGGCTTCAGTCAGTCAAGAGTCAGTCAGAGTGTGGTCATTATCCTCTGGGAAGTGCATTCACGAGCTCAGTTCTAGTGGAAACATGTTCCATTCTTGTGTTTTCCATCCAAGCTACTCCACTCTCTTGGTCATCGGAGGCTACCAGTCAATGGAGCTCTGGAACATGGCTGAGAACAAGTGTATGACGGTTGCTGCTCATGACTGTGTAATATCAGCTTTGGCACAGTCACCAGTTACAAGGATGGTCGCTTCAGCCAGTCATGATAAATCCGTTAAAATCTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

768

Amino Acids

83.01

Weight (kDa)

6.52

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_CAF1B_HIR1 PF24105 582 - 765 1.4e-07 CAF1B/HIR1 beta-propeller domain
WD40_Prp19 PF24814 592 - 727 2e-13 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 616 - 767 5.5e-24 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 620 - 767 1.5e-18 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 622 - 768 1.3e-18 WDR3 first beta-propeller domain
Beta-prop_WDR19_1st PF23389 622 - 766 5.8e-06 WDR19 first beta-propeller
WD40_WDHD1_1st PF24817 629 - 768 4.2e-12 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 629 - 765 8.7e-12 WDR36/Utp21 first beta-propeller
WD40_CDC20-Fz PF24807 630 - 767 4.5e-12 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 635 - 733 5.3e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 650 - 685 4e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 660 - 768 1.1e-10 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 983
AccB1I GGYRCC 1 cut(s) 184
AccB7I CCANNNNNTGG 2 cut(s) 1883, 2167
AciI CCGC 4 cut(s) 512, 845, 1060, 1375
AclI AACGTT 1 cut(s) 1530
AclWI GGATC 6 cut(s) 218, 404, 1114, 1270, 1334, 1347
AcoI YGGCCR 3 cut(s) 1061, 1240, 1824
AcsI RAATTY 5 cut(s) 91, 643, 1222, 1228, 1510
AcuI CTGAAG 4 cut(s) 678, 1791, 2007, 2253
AfaI GTAC 6 cut(s) 307, 332, 1362, 1417, 1423, 1696
AflIII ACRYGT 1 cut(s) 2100
AgeI ACCGGT 1 cut(s) 1418
AhlI ACTAGT 1 cut(s) 683
AjnI CCWGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
AjuI GAANNNNNNNTTGG 4 cut(s) 118, 150, 651, 683
AleI CACNNNNGTG 1 cut(s) 1979
Alw21I GWGCWC 4 cut(s) 1078, 1986, 2085, 2175
Alw26I GTCTC 2 cut(s) 740, 1482
Alw44I GTGCAC 2 cut(s) 1074, 1982
AlwI GGATC 6 cut(s) 218, 404, 1114, 1270, 1334, 1347
AlwNI CAGNNNCTG 2 cut(s) 562, 1907
ApaLI GTGCAC 2 cut(s) 1074, 1982
ApoI RAATTY 5 cut(s) 91, 643, 1222, 1228, 1510
AsiGI ACCGGT 1 cut(s) 1418
AspLEI GCGC 3 cut(s) 406, 430, 591
AspS9I GGNCC 8 cut(s) 156, 276, 635, 778, 1035, 1388, 1439, 1966
AsuHPI GGTGA 2 cut(s) 1876, 2238
AsuNHI GCTAGC 1 cut(s) 1523
AvaII GGWCC 2 cut(s) 635, 1439
BaeGI GKGCMC 2 cut(s) 1078, 1986
BalI TGGCCA 2 cut(s) 1242, 1826
BamHI GGATCC 1 cut(s) 1339
BanI GGYRCC 1 cut(s) 184
BanII GRGCYC 2 cut(s) 2085, 2175
BauI CACGAG 1 cut(s) 2078
BbsI GAAGAC 3 cut(s) 454, 1010, 1608
Bbv12I GWGCWC 4 cut(s) 1078, 1986, 2085, 2175
BbvCI CCTCAGC 1 cut(s) 1353
BciT130I CCWGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
BciVI GTATCC 1 cut(s) 1993
BclI TGATCA 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 740, 1482
BcuI ACTAGT 1 cut(s) 683
BfaI CTAG 6 cut(s) 684, 771, 1268, 1524, 1634, 2091
BfmI CTRYAG 2 cut(s) 1899, 1961
BfuAI ACCTGC 1 cut(s) 983
BfuI GTATCC 1 cut(s) 1993
BglII AGATCT 1 cut(s) 923
Bme1390I CCNGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
Bme18I GGWCC 2 cut(s) 635, 1439
BmgT120I GGNCC 8 cut(s) 156, 276, 635, 778, 1035, 1388, 1439, 1966
BmiI GGNNCC 5 cut(s) 186, 1341, 1630, 1709, 1871
BmrFI CCNGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 8 cut(s) 415, 757, 954, 1056, 1302, 1589, 1913, 1921
BmtI GCTAGC 1 cut(s) 1527
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 3 cut(s) 454, 1010, 1608
BplI GAGNNNNNCTC 2 cut(s) 1970, 2002
BpmI CTGGAG 3 cut(s) 453, 1422, 1506
Bpu10I CCTNAGC 1 cut(s) 1353
BpuEI CTTGAG 2 cut(s) 251, 1149
BsaJI CCNNGG 6 cut(s) 61, 628, 829, 1003, 1214, 1215
BsaWI WCCGGW 2 cut(s) 1418, 1704
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bse118I RCCGGY 1 cut(s) 1418
Bse1I ACTGG 6 cut(s) 245, 413, 1827, 2161, 2249, 2274
Bse3DI GCAATG 1 cut(s) 1177
BseBI CCWGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
BseDI CCNNGG 6 cut(s) 61, 628, 829, 1003, 1214, 1215
BseMI GCAATG 1 cut(s) 1177
BseMII CTCAG 6 cut(s) 611, 932, 1367, 1926, 2098, 2178
BseNI ACTGG 6 cut(s) 245, 413, 1827, 2161, 2249, 2274
BseRI GAGGAG 2 cut(s) 229, 752
BseSI GKGCMC 2 cut(s) 1078, 1986
BsgI GTGCAG 1 cut(s) 1698
BshNI GGYRCC 1 cut(s) 184
BshTI ACCGGT 1 cut(s) 1418
BsiHKAI GWGCWC 4 cut(s) 1078, 1986, 2085, 2175
BsiSI CCGG 3 cut(s) 182, 1419, 1705
BslFI GGGAC 1 cut(s) 482
BsmAI GTCTC 2 cut(s) 740, 1482
BsmBI CGTCTC 1 cut(s) 1482
BsmFI GGGAC 1 cut(s) 482
BsmI GAATGC 3 cut(s) 669, 1525, 2073
Bsp1286I GDGCHC 4 cut(s) 1078, 1986, 2085, 2175
Bsp1407I TGTACA 1 cut(s) 330
Bsp143I GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
Bsp19I CCATGG 1 cut(s) 61
BspACI CCGC 4 cut(s) 512, 845, 1060, 1375
BspCNI CTCAG 6 cut(s) 610, 931, 1366, 1927, 2097, 2179
BspHI TCATGA 3 cut(s) 384, 2215, 2278
BspLI GGNNCC 5 cut(s) 186, 1341, 1630, 1709, 1871
BspMAI CTGCAG 2 cut(s) 1903, 1965
BspMI ACCTGC 1 cut(s) 983
BspOI GCTAGC 1 cut(s) 1527
BspPI GGATC 6 cut(s) 218, 404, 1114, 1270, 1334, 1347
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 1177
BsrFI RCCGGY 1 cut(s) 1418
BsrGI TGTACA 1 cut(s) 330
BsrI ACTGG 6 cut(s) 245, 413, 1827, 2161, 2249, 2274
BssAI RCCGGY 1 cut(s) 1418
BssECI CCNNGG 6 cut(s) 61, 628, 829, 1003, 1214, 1215
BssMI GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
BssSI CACGAG 1 cut(s) 2078
BssT1I CCWWGG 2 cut(s) 61, 628
Bst2BI CACGAG 1 cut(s) 2078
Bst2UI CCWGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
Bst4CI ACNGT 7 cut(s) 319, 1113, 1415, 1435, 2206, 2222, 2244
Bst6I CTCTTC 2 cut(s) 1327, 1810
BstAPI GCANNNNNTGC 4 cut(s) 191, 577, 586, 695
BstAUI TGTACA 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 366, 1184, 1525
BstDEI CTNAG 8 cut(s) 375, 597, 650, 918, 1353, 1935, 2084, 2187
BstDSI CCRYGG 1 cut(s) 61
BstHHI GCGC 3 cut(s) 406, 430, 591
BstKTI GATC 7 cut(s) 79, 226, 412, 926, 1122, 1265, 1342
BstMAI GTCTC 2 cut(s) 740, 1482
BstMBI GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
BstNI CCWGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
BstNSI RCATGY 3 cut(s) 368, 1306, 2104
BstSCI CCNGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
BstSFI CTRYAG 2 cut(s) 1899, 1961
BstSLI GKGCMC 2 cut(s) 1078, 1986
BstV2I GAAGAC 3 cut(s) 454, 1010, 1608
BstX2I RGATCY 4 cut(s) 923, 1119, 1262, 1339
BstXI CCANNNNNNTGG 2 cut(s) 68, 2143
BstYI RGATCY 4 cut(s) 923, 1119, 1262, 1339
BsuI GTATCC 1 cut(s) 1993
BtgI CCRYGG 1 cut(s) 61
BtsI GCAGTG 2 cut(s) 369, 1958
BtsIMutI CAGTG 5 cut(s) 93, 315, 369, 1834, 1958
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 3 cut(s) 366, 1184, 1525
CaiI CAGNNNCTG 2 cut(s) 562, 1907
CciI TCATGA 3 cut(s) 384, 2215, 2278
CfoI GCGC 3 cut(s) 406, 430, 591
Cfr10I RCCGGY 1 cut(s) 1418
Cfr13I GGNCC 8 cut(s) 156, 276, 635, 778, 1035, 1388, 1439, 1966
Csp6I GTAC 6 cut(s) 306, 331, 1361, 1416, 1422, 1695
CspAI ACCGGT 1 cut(s) 1418
CviQI GTAC 6 cut(s) 306, 331, 1361, 1416, 1422, 1695
DdeI CTNAG 8 cut(s) 375, 597, 650, 918, 1353, 1935, 2084, 2187
DpnI GATC 7 cut(s) 78, 225, 411, 925, 1121, 1264, 1341
DpnII GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
DraI TTTAAA 1 cut(s) 1227
EaeI YGGCCR 3 cut(s) 1061, 1240, 1824
Eam1104I CTCTTC 2 cut(s) 1327, 1810
EarI CTCTTC 2 cut(s) 1327, 1810
Ecl136II GAGCTC 2 cut(s) 2083, 2173
Eco130I CCWWGG 2 cut(s) 61, 628
Eco24I GRGCYC 2 cut(s) 2085, 2175
Eco47I GGWCC 2 cut(s) 635, 1439
Eco53kI GAGCTC 2 cut(s) 2083, 2173
Eco57I CTGAAG 4 cut(s) 678, 1791, 2007, 2253
EcoICRI GAGCTC 2 cut(s) 2083, 2173
EcoO109I RGGNCCY 1 cut(s) 1388
EcoRI GAATTC 1 cut(s) 91
EcoRII CCWGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
EcoT14I CCWWGG 2 cut(s) 61, 628
EcoT38I GRGCYC 2 cut(s) 2085, 2175
ErhI CCWWGG 2 cut(s) 61, 628
Esp3I CGTCTC 1 cut(s) 1482
FalI AAGNNNNNCTT 2 cut(s) 651, 683
FaqI GGGAC 1 cut(s) 482
FbaI TGATCA 1 cut(s) 76
FriOI GRGCYC 2 cut(s) 2085, 2175
FspBI CTAG 6 cut(s) 684, 771, 1268, 1524, 1634, 2091
GlaI GCGC 3 cut(s) 405, 429, 590
GsuI CTGGAG 3 cut(s) 453, 1422, 1506
HapII CCGG 3 cut(s) 182, 1419, 1705
HhaI GCGC 3 cut(s) 406, 430, 591
Hin6I GCGC 3 cut(s) 404, 428, 589
HinP1I GCGC 3 cut(s) 404, 428, 589
HincII GTYRAC 2 cut(s) 875, 904
HindII GTYRAC 2 cut(s) 875, 904
HindIII AAGCTT 1 cut(s) 1728
HinfI GANTC 8 cut(s) 506, 740, 938, 1008, 1162, 1649, 1760, 2036
HpaI GTTAAC 1 cut(s) 904
HpaII CCGG 3 cut(s) 182, 1419, 1705
HphI GGTGA 2 cut(s) 1876, 2238
Hpy166II GTNNAC 6 cut(s) 331, 638, 875, 904, 1076, 1984
Hpy188III TCNNGA 9 cut(s) 268, 385, 1401, 2033, 2078, 2176, 2216, 2279, 2299
Hpy8I GTNNAC 6 cut(s) 331, 638, 875, 904, 1076, 1984
Hpy99I CGWCG 2 cut(s) 208, 211
HpyAV CCTTC 8 cut(s) 386, 391, 653, 1401, 1452, 1674, 1756, 1840
HpyCH4III ACNGT 7 cut(s) 319, 1113, 1415, 1435, 2206, 2222, 2244
HpyCH4IV ACGT 2 cut(s) 715, 1530
HpyF3I CTNAG 8 cut(s) 375, 597, 650, 918, 1353, 1935, 2084, 2187
HpySE526I ACGT 2 cut(s) 715, 1530
HspAI GCGC 3 cut(s) 404, 428, 589
Ksp22I TGATCA 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 904
Kzo9I GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
LmnI GCTCC 2 cut(s) 1403, 2170
LweI GCATC 8 cut(s) 415, 757, 954, 1056, 1302, 1589, 1913, 1921
MaeI CTAG 6 cut(s) 684, 771, 1268, 1524, 1634, 2091
MaeII ACGT 2 cut(s) 715, 1530
MaeIII GTNAC 4 cut(s) 1659, 1796, 2244, 2251
MalI GATC 7 cut(s) 78, 225, 411, 925, 1121, 1264, 1341
MboI GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
MboII GAAGA 9 cut(s) 364, 454, 933, 1010, 1314, 1317, 1613, 1797, 1848
MflI RGATCY 4 cut(s) 923, 1119, 1262, 1339
MhlI GDGCHC 4 cut(s) 1078, 1986, 2085, 2175
MlsI TGGCCA 2 cut(s) 1242, 1826
MluNI TGGCCA 2 cut(s) 1242, 1826
MlyI GAGTC 4 cut(s) 515, 1017, 1156, 2045
Mox20I TGGCCA 2 cut(s) 1242, 1826
MscI TGGCCA 2 cut(s) 1242, 1826
MseI TTAA 7 cut(s) 540, 840, 903, 1025, 1040, 1226, 2292
MslI CAYNNNNRTG 5 cut(s) 46, 1668, 1979, 2112, 2220
Msp20I TGGCCA 2 cut(s) 1242, 1826
MspA1I CMGCKG 2 cut(s) 562, 1597
MspI CCGG 3 cut(s) 182, 1419, 1705
MspR9I CCNGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
Mva1269I GAATGC 3 cut(s) 669, 1525, 2073
MvaI CCWGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
NcoI CCATGG 1 cut(s) 61
NdeII GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
NheI GCTAGC 1 cut(s) 1523
NlaIV GGNNCC 5 cut(s) 186, 1341, 1630, 1709, 1871
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 3 cut(s) 1659, 1796, 2244
NspI RCATGY 3 cut(s) 368, 1306, 2104
OliI CACNNNNGTG 1 cut(s) 1979
PaeI GCATGC 1 cut(s) 368
PagI TCATGA 3 cut(s) 384, 2215, 2278
PasI CCCWGGG 1 cut(s) 1215
PciI ACATGT 1 cut(s) 2100
PctI GAATGC 3 cut(s) 669, 1525, 2073
PfeI GAWTC 4 cut(s) 740, 938, 1649, 1760
PflMI CCANNNNNTGG 2 cut(s) 1883, 2167
PinAI ACCGGT 1 cut(s) 1418
PleI GAGTC 4 cut(s) 514, 1016, 1156, 2044
PpsI GAGTC 4 cut(s) 514, 1016, 1156, 2044
PscI ACATGT 1 cut(s) 2100
Psp124BI GAGCTC 2 cut(s) 2085, 2175
Psp1406I AACGTT 1 cut(s) 1530
Psp6I CCWGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
PspGI CCWGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
PspN4I GGNNCC 5 cut(s) 186, 1341, 1630, 1709, 1871
PspPI GGNCC 8 cut(s) 156, 276, 635, 778, 1035, 1388, 1439, 1966
PstI CTGCAG 2 cut(s) 1903, 1965
PstNI CAGNNNCTG 2 cut(s) 562, 1907
PsuI RGATCY 4 cut(s) 923, 1119, 1262, 1339
PvuII CAGCTG 2 cut(s) 562, 1597
RsaI GTAC 6 cut(s) 307, 332, 1362, 1417, 1423, 1696
RsaNI GTAC 6 cut(s) 306, 331, 1361, 1416, 1422, 1695
RseI CAYNNNNRTG 5 cut(s) 46, 1668, 1979, 2112, 2220
SacI GAGCTC 2 cut(s) 2085, 2175
SaqAI TTAA 7 cut(s) 540, 840, 903, 1025, 1040, 1226, 2292
Sau3AI GATC 7 cut(s) 76, 223, 409, 923, 1119, 1262, 1339
Sau96I GGNCC 8 cut(s) 156, 276, 635, 778, 1035, 1388, 1439, 1966
SchI GAGTC 4 cut(s) 515, 1017, 1156, 2045
ScrFI CCNGG 9 cut(s) 432, 807, 831, 978, 1005, 1065, 1188, 1216, 1485
SduI GDGCHC 4 cut(s) 1078, 1986, 2085, 2175
SfaNI GCATC 8 cut(s) 415, 757, 954, 1056, 1302, 1589, 1913, 1921
SfcI CTRYAG 2 cut(s) 1899, 1961
SinI GGWCC 2 cut(s) 635, 1439
SmiI ATTTAAAT 1 cut(s) 1227
SmiMI CAYNNNNRTG 5 cut(s) 46, 1668, 1979, 2112, 2220
SmlI CTYRAG 2 cut(s) 266, 1164
SmoI CTYRAG 2 cut(s) 266, 1164
SpeI ACTAGT 1 cut(s) 683
SphI GCATGC 1 cut(s) 368
SsiI CCGC 4 cut(s) 512, 845, 1060, 1375
SspI AATATT 1 cut(s) 1926
SspMI CTAG 6 cut(s) 684, 771, 1268, 1524, 1634, 2091
SstI GAGCTC 2 cut(s) 2085, 2175
StyD4I CCNGG 9 cut(s) 430, 805, 829, 976, 1003, 1063, 1186, 1214, 1483
StyI CCWWGG 2 cut(s) 61, 628
SwaI ATTTAAAT 1 cut(s) 1227
TaaI ACNGT 7 cut(s) 319, 1113, 1415, 1435, 2206, 2222, 2244
TaiI ACGT 2 cut(s) 718, 1533
TaqI TCGA 5 cut(s) 765, 868, 1050, 1758, 1929
TaqII GACCGA 1 cut(s) 404
TatI WGTACW 2 cut(s) 330, 1360
TauI GCSGC 3 cut(s) 515, 848, 1063
TfiI GAWTC 4 cut(s) 740, 938, 1649, 1760
Tru1I TTAA 7 cut(s) 540, 840, 903, 1025, 1040, 1226, 2292
Tru9I TTAA 7 cut(s) 540, 840, 903, 1025, 1040, 1226, 2292
TscAI CASTG 5 cut(s) 93, 322, 376, 1834, 1965
TseFI GTSAC 3 cut(s) 1659, 1796, 2244
Tsp45I GTSAC 3 cut(s) 1659, 1796, 2244
TspDTI ATGAA 6 cut(s) 186, 365, 373, 734, 1383, 1434
TspGWI ACGGA 3 cut(s) 1506, 1574, 2278
TspRI CASTG 5 cut(s) 93, 322, 376, 1834, 1965
Van91I CCANNNNNTGG 2 cut(s) 1883, 2167
VneI GTGCAC 2 cut(s) 1074, 1982
VpaK11BI GGWCC 2 cut(s) 635, 1439
XapI RAATTY 5 cut(s) 91, 643, 1222, 1228, 1510
XceI RCATGY 3 cut(s) 368, 1306, 2104
XcmI CCANNNNNNNNNTGG 3 cut(s) 1029, 1594, 1880
XspI CTAG 6 cut(s) 684, 771, 1268, 1524, 1634, 2091
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.