pycom10g14230

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001113
Physical Location & Seq
Reverse (-)
17612789 .. 17617247
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g14230.9

Sequence Viewer

Length: 1686 bp
ATGGCGCAGAGTAATTGGGAAGCCGATAAGATGCTTGATGTTTATATTCATGACTATTTGTTGAAAAGAAAATTGCTTGCTTCTGCAAATGCGTTTATGACAGAAGGGAAGGTTGCTACAGATCCAGTAGCAATTGATGCACCAGGAGGATTCCTCTTTGAATGGTGGTCTGTCTTTTGGGACATATTCATTGCAAGGACAAATGAGAAGCATTCGGAGGCTGCTGCAGCTTACATTGAGCAGCTGCAGCATTTGCAGCAGCGCAGTGCCCAGTTACAGCGCAGGGATCCTAATCATCCTGCCCTTGGTGGTGCTATAAATGCTATAAATTCTGAGGGAGTCATGGGTCAACCGTCAGCCAGTGTGCTAGCCATGAAAATGTATGAAGATCGTATGAAACACCCTCACCCGATGGATTCAGAGGCATCCCCTACGCTCATTGATGCCAGTAGGATGGCCCTGCTCAAATCAGCTGCAAATCCACAAGGCCAGTTGGTACAAGGGAATTCTGGGAACATGCCTGCTGGTTTTCAGCAAATTCAAGCCCGAACTCCTTTAACCACTGTAACTACTCAGAGATTGAATCAAGGTATTACAGGTCTTCCCTTGAAGGGTTGGCCTCTAACTGGAATCGACCAATTACGACCAAATTTGGGTGTACAAATGCAGAAGCCAAATCTTCAGACCCAAAATCAACTCCTTTTGGCATCTCAACAACAGCAAGTTTTGGCACAAGCTCAGGCACAAAATAACCTTCGTAATTCCACAAATTACGGAGATATGGATCCTCGCAGATTTTCTGGACTGCCTAGGGGTAACTTGAATGCAAAAGATGGTCAATCTACCAGAAATGATGGATCTATGTCCTCTCCAGTTTTATCAAGTTCACCAAAGATAAAAATGGCTCAGATGCAGCACCCTTCCTCTCAACAACATGAACAATTGCCACAGCAGCAACTGCAACAGAATAACAGAAAAAGGAAACAACACTCTTCCTCTGGACCTGCCAACAGCACTGGCACAGGAAACACTGTTGGCCCTTCACCTGGTTCGCCAGCATCAACACACACGCCTGGTGATGGAATTAACACAGCAAATAGCATGCAGCATGTTAACAGCATGCCAAAAAGCTTGATGATGTATCCAGAAGGAACAGGACTTCCTTCGTCTTCCAATTTACTGGATGACATTGACCGATTTGGAGACGTTGGTTCGCTAGAAGATAATGTGGAATCGTTTTTGTCAAATGATGGGGGAGACGGGAGGGAACTGTATGGGACATTAAAGCAGAGTCCTAAACAGCACCATAAAGATTCCTCTAAAGGTTTTACGTTTGGTGAAGTTGGCTGCATACGGACCAGAAACAGCAAAGTTACTTGCTGTCACTTTTCTTCGGATGGGAAGTTGCTGGCAAGTGCAGGACATGACAAAAAGGTTGTTCTCTGGAACATGGATACTCTGCAGCCTCAGAGTACTGCCGAAGAACACAAGTTAGTTATCACAGATGTTCGGTTTAGACCAAATTCATCTCAGCTGGCAACAGCTTCTTTTGACAAATCTGTACGATTGTGGGATGCAGCCAATCCAAACTATTGTTTACAAGCATATACGGGGCACAACTCACCTATTATGTCCCTTGACTTCCACCCGAAGAAGACTGATTTATTTTGTTTCTGTGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

562

Amino Acids

61.53

Weight (kDa)

8.4

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1012
AclWI GGATC 6 cut(s) 116, 281, 294, 779, 792, 865
AcsI RAATTY 5 cut(s) 328, 505, 537, 649, 1522
AcuI CTGAAG 1 cut(s) 665
AfaI GTAC 4 cut(s) 498, 660, 1474, 1563
AfiI CCNNNNNNNGG 6 cut(s) 305, 611, 626, 653, 1046, 1079
AgsI TTSAA 6 cut(s) 64, 161, 542, 583, 610, 823
AjnI CCWGG 3 cut(s) 142, 1045, 1072
AloI GAACNNNNNNTCC 2 cut(s) 1144, 1176
AluBI AGCT 7 cut(s) 230, 244, 473, 737, 1131, 1534, 1544
AluI AGCT 7 cut(s) 230, 244, 473, 737, 1131, 1534, 1544
Alw26I GTCTC 2 cut(s) 1197, 1251
AlwI GGATC 6 cut(s) 116, 281, 294, 779, 792, 865
AlwNI CAGNNNCTG 1 cut(s) 958
AoxI GGCC 4 cut(s) 456, 487, 617, 1036
ApoI RAATTY 5 cut(s) 328, 505, 537, 649, 1522
AspA2I CCTAGG 1 cut(s) 809
AspLEI GCGC 3 cut(s) 7, 264, 282
AspS9I GGNCC 4 cut(s) 457, 1001, 1037, 1356
AsuHPI GGTGA 6 cut(s) 398, 879, 1035, 1088, 1349, 1614
AsuNHI GCTAGC 1 cut(s) 367
AvaII GGWCC 2 cut(s) 1001, 1356
AvrII CCTAGG 1 cut(s) 809
BaeGI GKGCMC 2 cut(s) 271, 1617
BamHI GGATCC 2 cut(s) 286, 784
BbsI GAAGAC 3 cut(s) 593, 1161, 1661
BccI CCATC 7 cut(s) 406, 448, 827, 848, 1073, 1244, 1391
BciT130I CCWGG 3 cut(s) 144, 1047, 1074
BciVI GTATCC 2 cut(s) 1152, 1447
BcoDI GTCTC 2 cut(s) 1197, 1251
BfaI CTAG 3 cut(s) 368, 810, 1217
BfmI CTRYAG 4 cut(s) 117, 225, 245, 1460
BfuAI ACCTGC 1 cut(s) 1012
BfuI GTATCC 2 cut(s) 1152, 1447
BlnI CCTAGG 1 cut(s) 809
BmcAI AGTACT 1 cut(s) 1474
Bme1390I CCNGG 3 cut(s) 144, 1047, 1074
Bme18I GGWCC 2 cut(s) 1001, 1356
BmgT120I GGNCC 4 cut(s) 457, 1001, 1037, 1356
BmiI GGNNCC 2 cut(s) 288, 786
BmrFI CCNGG 3 cut(s) 144, 1047, 1074
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 8 cut(s) 21, 127, 433, 434, 716, 900, 1067, 1564
BmtI GCTAGC 1 cut(s) 371
BmuI ACTGGG 1 cut(s) 265
BpiI GAAGAC 3 cut(s) 593, 1161, 1661
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpmI CTGGAG 1 cut(s) 855
Bpu10I CCTNAGC 1 cut(s) 738
Bsa29I ATCGAT 1 cut(s) 1681
BsaBI GATNNNNATC 2 cut(s) 291, 783
BsaJI CCNNGG 2 cut(s) 304, 809
Bsc4I CCNNNNNNNGG 6 cut(s) 305, 611, 626, 653, 1046, 1079
Bse1I ACTGG 9 cut(s) 125, 271, 360, 447, 490, 631, 872, 1021, 1185
Bse3DI GCAATG 1 cut(s) 189
Bse8I GATNNNNATC 2 cut(s) 291, 783
BseBI CCWGG 3 cut(s) 144, 1047, 1074
BseCI ATCGAT 1 cut(s) 1681
BseDI CCNNGG 2 cut(s) 304, 809
BseGI GGATG 6 cut(s) 295, 425, 459, 1189, 1402, 1579
BseJI GATNNNNATC 2 cut(s) 291, 783
BseLI CCNNNNNNNGG 6 cut(s) 305, 611, 626, 653, 1046, 1079
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 6 cut(s) 324, 587, 752, 920, 1481, 1544
BseNI ACTGG 9 cut(s) 125, 271, 360, 447, 490, 631, 872, 1021, 1185
BseSI GKGCMC 2 cut(s) 271, 1617
BsgI GTGCAG 1 cut(s) 1437
BshFI GGCC 4 cut(s) 458, 489, 619, 1038
BshVI ATCGAT 1 cut(s) 1681
BslFI GGGAC 3 cut(s) 194, 1291, 1618
BslI CCNNNNNNNGG 6 cut(s) 305, 611, 626, 653, 1046, 1079
BsmAI GTCTC 2 cut(s) 1197, 1251
BsmBI CGTCTC 2 cut(s) 1197, 1251
BsmFI GGGAC 3 cut(s) 194, 1291, 1618
BsmI GAATGC 2 cut(s) 211, 829
BsnI GGCC 4 cut(s) 458, 489, 619, 1038
Bsp1286I GDGCHC 2 cut(s) 271, 1617
Bsp1407I TGTACA 1 cut(s) 658
Bsp143I GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
BspANI GGCC 4 cut(s) 458, 489, 619, 1038
BspCNI CTCAG 6 cut(s) 325, 586, 751, 919, 1480, 1543
BspDI ATCGAT 1 cut(s) 1681
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 288, 786
BspMAI CTGCAG 3 cut(s) 229, 249, 1464
BspMI ACCTGC 1 cut(s) 1012
BspOI GCTAGC 1 cut(s) 371
BspPI GGATC 6 cut(s) 116, 281, 294, 779, 792, 865
BsrDI GCAATG 1 cut(s) 189
BsrGI TGTACA 1 cut(s) 658
BsrI ACTGG 9 cut(s) 125, 271, 360, 447, 490, 631, 872, 1021, 1185
BssECI CCNNGG 2 cut(s) 304, 809
BssMI GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
BssT1I CCWWGG 2 cut(s) 304, 809
Bst2UI CCWGG 3 cut(s) 144, 1047, 1074
Bst4CI ACNGT 4 cut(s) 354, 565, 1033, 1272
Bst6I CTCTTC 1 cut(s) 997
BstAPI GCANNNNNTGC 3 cut(s) 137, 253, 958
BstAUI TGTACA 1 cut(s) 658
BstC8I GCNNGC 8 cut(s) 78, 369, 522, 1056, 1103, 1121, 1410, 1536
BstDEI CTNAG 6 cut(s) 333, 573, 738, 906, 1467, 1530
BstF5I GGATG 6 cut(s) 295, 425, 459, 1189, 1402, 1579
BstHHI GCGC 3 cut(s) 7, 264, 282
BstKTI GATC 6 cut(s) 124, 289, 391, 787, 860, 1681
BstMAI GTCTC 2 cut(s) 1197, 1251
BstMBI GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
BstMWI GCNNNNNNNGC 8 cut(s) 137, 227, 247, 253, 256, 320, 952, 958
BstNI CCWGG 3 cut(s) 144, 1047, 1074
BstNSI RCATGY 4 cut(s) 520, 1105, 1112, 1123
BstSCI CCNGG 3 cut(s) 142, 1045, 1072
BstSFI CTRYAG 4 cut(s) 117, 225, 245, 1460
BstSLI GKGCMC 2 cut(s) 271, 1617
BstV2I GAAGAC 3 cut(s) 593, 1161, 1661
BstX2I RGATCY 4 cut(s) 121, 286, 784, 857
BstXI CCANNNNNNTGG 2 cut(s) 454, 1180
BstYI RGATCY 4 cut(s) 121, 286, 784, 857
Bsu15I ATCGAT 1 cut(s) 1681
BsuI GTATCC 2 cut(s) 1152, 1447
BsuRI GGCC 4 cut(s) 458, 489, 619, 1038
BsuTUI ATCGAT 1 cut(s) 1681
BtsCI GGATG 6 cut(s) 295, 425, 459, 1189, 1402, 1579
BtsI GCAGTG 1 cut(s) 271
BtsIMutI CAGTG 5 cut(s) 271, 367, 561, 1014, 1029
BveI ACCTGC 1 cut(s) 1012
Cac8I GCNNGC 8 cut(s) 78, 369, 522, 1056, 1103, 1121, 1410, 1536
CaiI CAGNNNCTG 1 cut(s) 958
CciI TCATGA 1 cut(s) 49
CfoI GCGC 3 cut(s) 7, 264, 282
Cfr13I GGNCC 4 cut(s) 457, 1001, 1037, 1356
ClaI ATCGAT 1 cut(s) 1681
CsiI ACCWGGT 1 cut(s) 1045
Csp6I GTAC 4 cut(s) 497, 659, 1473, 1562
CviQI GTAC 4 cut(s) 497, 659, 1473, 1562
DdeI CTNAG 6 cut(s) 333, 573, 738, 906, 1467, 1530
DpnI GATC 6 cut(s) 123, 288, 390, 786, 859, 1680
DpnII GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
Eam1104I CTCTTC 1 cut(s) 997
EarI CTCTTC 1 cut(s) 997
Eco130I CCWWGG 2 cut(s) 304, 809
Eco47I GGWCC 2 cut(s) 1001, 1356
Eco57I CTGAAG 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 505
EcoRII CCWGG 3 cut(s) 142, 1045, 1072
EcoT14I CCWWGG 2 cut(s) 304, 809
ErhI CCWWGG 2 cut(s) 304, 809
Esp3I CGTCTC 2 cut(s) 1197, 1251
FaqI GGGAC 3 cut(s) 194, 1291, 1618
FokI GGATG 6 cut(s) 282, 412, 466, 1196, 1409, 1586
FspBI CTAG 3 cut(s) 368, 810, 1217
GlaI GCGC 3 cut(s) 6, 263, 281
GsuI CTGGAG 1 cut(s) 855
HaeIII GGCC 4 cut(s) 458, 489, 619, 1038
HhaI GCGC 3 cut(s) 7, 264, 282
Hin6I GCGC 3 cut(s) 5, 262, 280
HinP1I GCGC 3 cut(s) 5, 262, 280
HincII GTYRAC 2 cut(s) 350, 1114
HindII GTYRAC 2 cut(s) 350, 1114
HindIII AAGCTT 1 cut(s) 1129
HinfI GANTC 8 cut(s) 150, 339, 416, 583, 630, 1232, 1291, 1313
HpaI GTTAAC 1 cut(s) 1114
HphI GGTGA 6 cut(s) 398, 879, 1035, 1088, 1349, 1614
Hpy166II GTNNAC 5 cut(s) 350, 659, 887, 1114, 1598
Hpy188I TCNGA 8 cut(s) 217, 334, 421, 576, 684, 909, 1396, 1470
Hpy188III TCNNGA 5 cut(s) 50, 801, 999, 1145, 1444
Hpy8I GTNNAC 5 cut(s) 350, 659, 887, 1114, 1598
HpyAV CCTTC 8 cut(s) 98, 103, 604, 764, 930, 1050, 1142, 1173
HpyCH4III ACNGT 4 cut(s) 354, 565, 1033, 1272
HpyCH4IV ACGT 2 cut(s) 1206, 1331
HpyF10VI GCNNNNNNNGC 8 cut(s) 137, 227, 247, 253, 256, 320, 952, 958
HpyF3I CTNAG 6 cut(s) 333, 573, 738, 906, 1467, 1530
HpySE526I ACGT 2 cut(s) 1206, 1331
HspAI GCGC 3 cut(s) 5, 262, 280
KspAI GTTAAC 1 cut(s) 1114
Kzo9I GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
LweI GCATC 8 cut(s) 21, 127, 433, 434, 716, 900, 1067, 1564
MabI ACCWGGT 1 cut(s) 1045
MaeI CTAG 3 cut(s) 368, 810, 1217
MaeII ACGT 2 cut(s) 1206, 1331
MaeIII GTNAC 5 cut(s) 273, 565, 815, 1372, 1382
MalI GATC 6 cut(s) 123, 288, 390, 786, 859, 1680
MboI GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
MfeI CAATTG 2 cut(s) 132, 941
MflI RGATCY 4 cut(s) 121, 286, 784, 857
MhlI GDGCHC 2 cut(s) 271, 1617
MlyI GAGTC 2 cut(s) 348, 1300
MseI TTAA 4 cut(s) 557, 1086, 1113, 1283
MslI CAYNNNNRTG 1 cut(s) 377
MspA1I CMGCKG 3 cut(s) 244, 473, 1534
MspR9I CCNGG 3 cut(s) 144, 1047, 1074
MunI CAATTG 2 cut(s) 132, 941
Mva1269I GAATGC 2 cut(s) 211, 829
MvaI CCWGG 3 cut(s) 144, 1047, 1074
MwoI GCNNNNNNNGC 8 cut(s) 137, 227, 247, 253, 256, 320, 952, 958
NdeII GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
NheI GCTAGC 1 cut(s) 367
NlaIV GGNNCC 2 cut(s) 288, 786
NmuCI GTSAC 1 cut(s) 1382
NspI RCATGY 4 cut(s) 520, 1105, 1112, 1123
PaeI GCATGC 2 cut(s) 1105, 1123
PagI TCATGA 1 cut(s) 49
PctI GAATGC 2 cut(s) 211, 829
PfeI GAWTC 6 cut(s) 150, 416, 583, 630, 1232, 1313
PleI GAGTC 2 cut(s) 347, 1299
PpsI GAGTC 2 cut(s) 347, 1299
Psp6I CCWGG 3 cut(s) 142, 1045, 1072
PspGI CCWGG 3 cut(s) 142, 1045, 1072
PspN4I GGNNCC 2 cut(s) 288, 786
PspPI GGNCC 4 cut(s) 457, 1001, 1037, 1356
PstI CTGCAG 3 cut(s) 229, 249, 1464
PstNI CAGNNNCTG 1 cut(s) 958
PsuI RGATCY 4 cut(s) 121, 286, 784, 857
PvuII CAGCTG 3 cut(s) 244, 473, 1534
RsaI GTAC 4 cut(s) 498, 660, 1474, 1563
RsaNI GTAC 4 cut(s) 497, 659, 1473, 1562
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 4 cut(s) 557, 1086, 1113, 1283
Sau3AI GATC 6 cut(s) 121, 286, 388, 784, 857, 1678
Sau96I GGNCC 4 cut(s) 457, 1001, 1037, 1356
ScaI AGTACT 1 cut(s) 1474
SchI GAGTC 2 cut(s) 348, 1300
ScrFI CCNGG 3 cut(s) 144, 1047, 1074
SduI GDGCHC 2 cut(s) 271, 1617
SexAI ACCWGGT 1 cut(s) 1045
SfaNI GCATC 8 cut(s) 21, 127, 433, 434, 716, 900, 1067, 1564
SfcI CTRYAG 4 cut(s) 117, 225, 245, 1460
SinI GGWCC 2 cut(s) 1001, 1356
SmiMI CAYNNNNRTG 1 cut(s) 377
SphI GCATGC 2 cut(s) 1105, 1123
SspMI CTAG 3 cut(s) 368, 810, 1217
StyD4I CCNGG 3 cut(s) 142, 1045, 1072
StyI CCWWGG 2 cut(s) 304, 809
TaaI ACNGT 4 cut(s) 354, 565, 1033, 1272
TaiI ACGT 2 cut(s) 1209, 1334
TaqI TCGA 2 cut(s) 633, 1681
TaqII GACCGA 1 cut(s) 1209
TatI WGTACW 2 cut(s) 658, 1472
TfiI GAWTC 6 cut(s) 150, 416, 583, 630, 1232, 1313
Tru1I TTAA 4 cut(s) 557, 1086, 1113, 1283
Tru9I TTAA 4 cut(s) 557, 1086, 1113, 1283
TscAI CASTG 5 cut(s) 271, 367, 568, 1021, 1036
TseFI GTSAC 1 cut(s) 1382
Tsp45I GTSAC 1 cut(s) 1382
TspDTI ATGAA 7 cut(s) 38, 178, 389, 399, 410, 951, 1515
TspGWI ACGGA 2 cut(s) 789, 1369
TspRI CASTG 5 cut(s) 271, 367, 568, 1021, 1036
VpaK11BI GGWCC 2 cut(s) 1001, 1356
XapI RAATTY 5 cut(s) 328, 505, 537, 649, 1522
XceI RCATGY 4 cut(s) 520, 1105, 1112, 1123
XmaJI CCTAGG 1 cut(s) 809
XspI CTAG 3 cut(s) 368, 810, 1217
ZrmI AGTACT 1 cut(s) 1474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.