Rh4CG008800

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0001113
Physical Location & Seq
Forward (+)
1561872 .. 1574875
13004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG008800.1

Sequence Viewer

Length: 2325 bp
ATGGCCCAGAGTAATTGGGAAGCAGATAAGATGCTTGATGTGTACATTTACGATTATCTAATGAAGAAGGAATTGCATGCCACTGCTAAGTCTTTCATGACCGAAGGGAAGGTTGCGCCCGATCCAGTAGCCATTGATGCACCTGGAGGGTTTCTTTTTGAATGGTGGTCTGTCTTCTGGGACATTTTTATTGCGAGGACAAATGATAAACATTCCGAGTCTGCGGCAGTTTATATAGAGGCACAACAAATTAAAACAAAAGAGCAACAACAGCTGCAAATGCAACAGTTGCAACTAATGCGCCAAGCTCAGTTGCAAAGAAATCCTACTAATCCTCCCCTTGGTGGTCCACTAACTTCACTAAGTTCTGAAGGAATGCTTGGGCAATCTACCACTAATGCATTGGCTGCAAAAATGTATGAGGAACGTATGAAACACCCCAATCAAATAGATTCAGAAACATCCCAACCACTCCTCGATGCTAGAGTGGCCCTGCTGAAATCAACAACAAACCATCCTGGTCAGTTGGTTCAAGGGAACCCTGGCAGTGTTAATGCGGCATTACAACAAATCCAAGCTCGAAGTCAACAGACCGCTGACATAAAGAGTGAAGTTAACATGGTTGCCTCTCAGAGATCTTTGCCTGTGGATTCTTCAATTTATGCACAAGGAATGATGCAGCCAAAACCAGGAATAGGAAATGCAGGTTTGAACCCAGGAGTCGGTGGTCTTCCATTAAAGGGATGGCCCTTAACAGGCATCGACCAAATGCGGCCAGGGTTAGGTGCACAAGTTCAAAAACCTTTCTTGCAAGGTGCAACACAGTTTCAGATCCTCTCACAGCAACAACAACAGCTTTTAGCACAGGTTCAGACACAAGGCAATGTTGGTAGCATACCTGGCTATGGAGATATGAGGGGATTGCCCAGGGGAAATTTAAATTCTAAAGATGGCCAATCCATCACAAACAATGGATCTCTAGGTTCTCCTATGCAATCAACTTCGCAGATAAACATGCCACAGATGCAACACTCTTCTTCTCAACAACAGGATCCTTTGCAGCCTCAGCAAGTACAGCAGAATAACCGCAAAAGGAAAGGGCCTTCATCCTCTGGAGCTGCTAACAGTACCGGTACAGGAAATACAGTTGGTCCTTCATCTAATTCCCAACCATCAACTCCATCCACTCATACCCCTGGAGACGGAATTGCTATGGCTGGAAATTTTCCGAATGCTAGCAACGTTCCGAAAAGTTTGATGATGTATGGCACGGATGGAACAGGTGGCCTTGCATCATCCACAAATCAGCTGGAAGACATGGACCAATTTGGAGATGTTGGTTCCCTAGAAGACAATGTGGAATCCTTTTTGTCACATGATGATGGAGATGGAAGGGATTTGTTTGGTACATTGAACCGGAACCCTGCACATTCCACAGAAGCTTCAAAGGATTTTTCCTTCAATGAAGTCGGTTCAATAAGTAAAAGTAATAGCAAAGTTGTCTGCTGTCACTTCTCTTCAGATGGAAAATTATTGGCTAGTGCTGGACATGACAAGAAGGTTGTTGTTTGGAATATGGAAACACTACAGACTGAAAGCACACCTGAGGATCACAGCCTGATAATTACTGATGTTCGATTTAGACCAAATTCAACTCAGTTGGCAACTTCTTCATTTGACACAACTGTGCGACTTTGGGATGCTGCTGAACCAAACTTTTGTTTACAGACATATAAAGGACATACCTCGCATGTAAGGTCACTTGATTTCCACCCTAAGAAGACTGACCTTTTCTGCTCATGTGACACGAACAATGAGATTCGCTTTTGGAATATTAATCAGTATTCGTGCATTCGTGTTTCTAAGGGAGGTTCTTCACAGGTGAGGTTCCAGCCAAGAATTGGACAATTTATGGCTGCAGCATCTGGGAATGTTGTGTCAATATTTGATGCTGAGAGTGATAGGCAGACACATTCACTGCAGGGCCACTCCACAGAGGTGCACTCTCTTTGTTGGGATACAAATGGAGATTATTTGGCTTCAGTCAGTCAAGAGTCTGTCAGAGTGTGGTCATTATCCTCTGGGAAGTGCATTCACGATCTCAGTTCTAGTGGAAACATGTTCCATTCTTGTGTTTTCCATCCAAGCTACTCCACTCTCTTGGTCATCGGAGGCTACCAGTCAATGGAGCTCTGGAACATGGCTGAGAACAAGTGTATGACGGTTGCTGCTCATGACTGTGTAATATCAGCTTTGGCACAGTCACCAGTTACAAGGATGGTCGCTTCAGCCAGTCATGATAAATCCGTCAAAATCTGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

774

Amino Acids

84.18

Weight (kDa)

6.12

Isoelectric Point (pI)

39.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LisH PF08513 10 - 36 2.3e-06 LisH
Beta-prop_TEP1_2nd PF25047 487 - 589 1.2e-10 TEP-1 second beta-propeller
Beta-prop_CAF1B_HIR1 PF24105 487 - 618 4.3e-08 CAF1B/HIR1 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 487 - 692 3.7e-14 MABP1/WDR62 second WD40 domain
EIF3I PF24805 488 - 569 2.2e-06 EIF3I
WD40_WDHD1_1st PF24817 490 - 571 1.4e-11 WDHD1 first WD40 domain
WD40 PF00400 493 - 525 4.9e-06 WD domain, G-beta repeat
Beta-prop_WDR36-Utp21_2nd PF25168 493 - 594 1.1e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 494 - 620 2.5e-27 WDR5 beta-propeller domain
Beta-prop_EML_2 PF23414 494 - 616 4.7e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 495 - 626 8.6e-13 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 496 - 734 2.8e-38 Prp19 WD40 domain
WD40_Gbeta PF25391 497 - 610 1e-10 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 497 - 570 1.3e-14 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 497 - 612 6e-22 WDR3 first beta-propeller domain
Beta-prop_EML PF23409 499 - 671 1.1e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz PF24807 529 - 685 1.8e-17 CDC20/Fizzy WD40 domain
WD40 PF00400 534 - 567 4.8e-06 WD domain, G-beta repeat
Beta-prop_THOC3 PF25174 538 - 774 4.6e-37 THOC3 beta-propeller domain
WD40_WDHD1_1st PF24817 542 - 722 1.3e-18 WDHD1 first WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 579 - 701 1.5e-08 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st PF25173 600 - 774 2.4e-21 WDR3 first beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 604 - 771 3.8e-13 WDR36/Utp21 first beta-propeller
Beta-prop_WDR5 PF25175 623 - 773 1.7e-23 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 635 - 774 6.4e-12 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 636 - 773 7.1e-12 CDC20/Fizzy WD40 domain
Beta-prop_EML PF23409 645 - 739 8.2e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40 PF00400 656 - 691 4.1e-06 WD domain, G-beta repeat
Beta-prop_WDR3_2nd PF25172 666 - 774 9.4e-11 WDR3 second beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 695
AccB7I CCANNNNNTGG 2 cut(s) 1901, 2185
AciI CCGC 5 cut(s) 224, 557, 594, 772, 1087
AclI AACGTT 1 cut(s) 1242
AclWI GGATC 6 cut(s) 116, 826, 982, 1046, 1059, 1617
AcoI YGGCCR 2 cut(s) 773, 952
AcsI RAATTY 4 cut(s) 934, 940, 1222, 1648
AcuI CTGAAG 4 cut(s) 390, 1503, 2025, 2271
AfaI GTAC 5 cut(s) 44, 1074, 1129, 1135, 1408
AflIII ACRYGT 1 cut(s) 2118
AgeI ACCGGT 1 cut(s) 1130
AjnI CCWGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AleI CACNNNNGTG 2 cut(s) 1685, 1997
Alw21I GWGCWC 3 cut(s) 790, 2004, 2193
Alw26I GTCTC 1 cut(s) 1194
Alw44I GTGCAC 2 cut(s) 786, 2000
AlwI GGATC 6 cut(s) 116, 826, 982, 1046, 1059, 1617
AlwNI CAGNNNCTG 1 cut(s) 1925
AoxI GGCC 8 cut(s) 3, 489, 746, 773, 952, 1100, 1285, 1984
ApaLI GTGCAC 2 cut(s) 786, 2000
ApeKI GCWGC 9 cut(s) 274, 407, 679, 1060, 1118, 1703, 1916, 1919, 2228
ApoI RAATTY 4 cut(s) 934, 940, 1222, 1648
AseI ATTAAT 1 cut(s) 1836
AsiGI ACCGGT 1 cut(s) 1130
AspLEI GCGC 2 cut(s) 118, 303
AspS9I GGNCC 8 cut(s) 4, 347, 490, 747, 1100, 1151, 1321, 1984
AsuHPI GGTGA 2 cut(s) 1894, 2256
AsuNHI GCTAGC 1 cut(s) 1235
AvaII GGWCC 3 cut(s) 347, 1151, 1321
AxyI CCTNAGG 1 cut(s) 1605
BaeGI GKGCMC 2 cut(s) 790, 2004
BalI TGGCCA 1 cut(s) 954
BamHI GGATCC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 2193
BbsI GAAGAC 5 cut(s) 166, 722, 1320, 1356, 1787
Bbv12I GWGCWC 3 cut(s) 790, 2004, 2193
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 9 cut(s) 261, 394, 691, 1072, 1105, 1690, 1903, 1931, 2215
BciT130I CCWGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
BciVI GTATCC 1 cut(s) 2011
BcoDI GTCTC 1 cut(s) 1194
BfaI CTAG 6 cut(s) 483, 980, 1236, 1346, 1539, 2109
BfmI CTRYAG 3 cut(s) 1586, 1917, 1979
BfuAI ACCTGC 1 cut(s) 695
BfuI GTATCC 1 cut(s) 2011
BglII AGATCT 1 cut(s) 635
Bme1390I CCNGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
Bme18I GGWCC 3 cut(s) 347, 1151, 1321
BmgT120I GGNCC 8 cut(s) 4, 347, 490, 747, 1100, 1151, 1321, 1984
BmiI GGNNCC 5 cut(s) 539, 1053, 1342, 1421, 1889
BmrFI CCNGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
BmtI GCTAGC 1 cut(s) 1239
BpiI GAAGAC 5 cut(s) 166, 722, 1320, 1356, 1787
BplI GAGNNNNNCTC 2 cut(s) 1988, 2020
BpmI CTGGAG 3 cut(s) 165, 1134, 1218
Bpu10I CCTNAGC 1 cut(s) 1065
BsaJI CCNNGG 7 cut(s) 340, 541, 715, 776, 926, 927, 1195
BsaWI WCCGGW 2 cut(s) 1130, 1416
BsaXI ACNNNNNCTCC 2 cut(s) 319, 349
Bse118I RCCGGY 1 cut(s) 1130
Bse1I ACTGG 4 cut(s) 125, 2179, 2267, 2292
Bse21I CCTNAGG 1 cut(s) 1605
Bse3DI GCAATG 1 cut(s) 889
BseBI CCWGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
BseDI CCNNGG 7 cut(s) 340, 541, 715, 776, 926, 927, 1195
BseMI GCAATG 1 cut(s) 889
BseMII CTCAG 8 cut(s) 323, 644, 1079, 1596, 1670, 1944, 2116, 2196
BseNI ACTGG 4 cut(s) 125, 2179, 2267, 2292
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 2 cut(s) 790, 2004
BseXI GCAGC 9 cut(s) 261, 394, 691, 1072, 1105, 1690, 1903, 1931, 2215
BsgI GTGCAG 1 cut(s) 1410
BshFI GGCC 8 cut(s) 5, 491, 748, 775, 954, 1102, 1287, 1986
BshTI ACCGGT 1 cut(s) 1130
BsiHKAI GWGCWC 3 cut(s) 790, 2004, 2193
BsiSI CCGG 2 cut(s) 1131, 1417
BslFI GGGAC 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 1194
BsmBI CGTCTC 1 cut(s) 1194
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 4 cut(s) 381, 1237, 1851, 2091
BsnI GGCC 8 cut(s) 5, 491, 748, 775, 954, 1102, 1287, 1986
Bsp1286I GDGCHC 3 cut(s) 790, 2004, 2193
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
BspACI CCGC 5 cut(s) 224, 557, 594, 772, 1087
BspANI GGCC 8 cut(s) 5, 491, 748, 775, 954, 1102, 1287, 1986
BspCNI CTCAG 8 cut(s) 322, 643, 1078, 1597, 1669, 1945, 2115, 2197
BspHI TCATGA 3 cut(s) 96, 2233, 2296
BspLI GGNNCC 5 cut(s) 539, 1053, 1342, 1421, 1889
BspMAI CTGCAG 2 cut(s) 1921, 1983
BspMI ACCTGC 1 cut(s) 695
BspOI GCTAGC 1 cut(s) 1239
BspPI GGATC 6 cut(s) 116, 826, 982, 1046, 1059, 1617
BsrDI GCAATG 1 cut(s) 889
BsrFI RCCGGY 1 cut(s) 1130
BsrGI TGTACA 1 cut(s) 42
BsrI ACTGG 4 cut(s) 125, 2179, 2267, 2292
BssAI RCCGGY 1 cut(s) 1130
BssECI CCNNGG 7 cut(s) 340, 541, 715, 776, 926, 927, 1195
BssMI GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
BssT1I CCWWGG 1 cut(s) 340
Bst2UI CCWGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
Bst4CI ACNGT 8 cut(s) 288, 825, 1127, 1147, 1687, 2224, 2240, 2262
Bst6I CTCTTC 2 cut(s) 1039, 1522
BstAPI GCANNNNNTGC 3 cut(s) 289, 298, 407
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 78, 1237
BstHHI GCGC 2 cut(s) 118, 303
BstKTI GATC 7 cut(s) 124, 638, 834, 977, 1054, 1612, 2101
BstMAI GTCTC 1 cut(s) 1194
BstMBI GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
BstNI CCWGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
BstNSI RCATGY 4 cut(s) 80, 1018, 1754, 2122
BstSCI CCNGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
BstSFI CTRYAG 3 cut(s) 1586, 1917, 1979
BstSLI GKGCMC 2 cut(s) 790, 2004
BstV1I GCAGC 9 cut(s) 261, 394, 691, 1072, 1105, 1690, 1903, 1931, 2215
BstV2I GAAGAC 5 cut(s) 166, 722, 1320, 1356, 1787
BstX2I RGATCY 4 cut(s) 635, 831, 974, 1051
BstXI CCANNNNNNTGG 1 cut(s) 2161
BstYI RGATCY 4 cut(s) 635, 831, 974, 1051
Bsu36I CCTNAGG 1 cut(s) 1605
BsuI GTATCC 1 cut(s) 2011
BsuRI GGCC 8 cut(s) 5, 491, 748, 775, 954, 1102, 1287, 1986
BtsI GCAGTG 3 cut(s) 81, 553, 1976
BtsIMutI CAGTG 3 cut(s) 81, 553, 1976
BveI ACCTGC 1 cut(s) 695
Cac8I GCNNGC 2 cut(s) 78, 1237
CaiI CAGNNNCTG 1 cut(s) 1925
CciI TCATGA 3 cut(s) 96, 2233, 2296
CfoI GCGC 2 cut(s) 118, 303
Cfr10I RCCGGY 1 cut(s) 1130
Cfr13I GGNCC 8 cut(s) 4, 347, 490, 747, 1100, 1151, 1321, 1984
Csp6I GTAC 5 cut(s) 43, 1073, 1128, 1134, 1407
CspAI ACCGGT 1 cut(s) 1130
CviQI GTAC 5 cut(s) 43, 1073, 1128, 1134, 1407
DpnI GATC 7 cut(s) 123, 637, 833, 976, 1053, 1611, 2100
DpnII GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
DraI TTTAAA 1 cut(s) 939
EaeI YGGCCR 2 cut(s) 773, 952
Eam1104I CTCTTC 2 cut(s) 1039, 1522
EarI CTCTTC 2 cut(s) 1039, 1522
Ecl136II GAGCTC 1 cut(s) 2191
Eco130I CCWWGG 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 2193
Eco47I GGWCC 3 cut(s) 347, 1151, 1321
Eco53kI GAGCTC 1 cut(s) 2191
Eco57I CTGAAG 4 cut(s) 390, 1503, 2025, 2271
Eco81I CCTNAGG 1 cut(s) 1605
EcoICRI GAGCTC 1 cut(s) 2191
EcoO109I RGGNCCY 1 cut(s) 1100
EcoRII CCWGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
EcoT14I CCWWGG 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 2193
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 1194
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FaqI GGGAC 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 2193
FspBI CTAG 6 cut(s) 483, 980, 1236, 1346, 1539, 2109
GlaI GCGC 2 cut(s) 117, 302
GsuI CTGGAG 3 cut(s) 165, 1134, 1218
HaeIII GGCC 8 cut(s) 5, 491, 748, 775, 954, 1102, 1287, 1986
HapII CCGG 2 cut(s) 1131, 1417
HhaI GCGC 2 cut(s) 118, 303
Hin6I GCGC 2 cut(s) 116, 301
HinP1I GCGC 2 cut(s) 116, 301
HincII GTYRAC 2 cut(s) 587, 616
HindII GTYRAC 2 cut(s) 587, 616
HindIII AAGCTT 1 cut(s) 1440
HinfI GANTC 7 cut(s) 218, 452, 650, 720, 1361, 1819, 2054
HpaI GTTAAC 1 cut(s) 616
HpaII CCGG 2 cut(s) 1131, 1417
HphI GGTGA 2 cut(s) 1894, 2256
Hpy166II GTNNAC 7 cut(s) 43, 350, 587, 616, 788, 1724, 2002
Hpy188III TCNNGA 8 cut(s) 97, 1113, 2051, 2096, 2194, 2234, 2297, 2317
Hpy8I GTNNAC 7 cut(s) 43, 350, 587, 616, 788, 1724, 2002
HpyAV CCTTC 9 cut(s) 61, 98, 103, 365, 1113, 1164, 1386, 1468, 1552
HpyCH4III ACNGT 8 cut(s) 288, 825, 1127, 1147, 1687, 2224, 2240, 2262
HpyCH4IV ACGT 2 cut(s) 427, 1242
HpySE526I ACGT 2 cut(s) 427, 1242
HspAI GCGC 2 cut(s) 116, 301
KspAI GTTAAC 1 cut(s) 616
Kzo9I GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
LmnI GCTCC 2 cut(s) 1115, 2188
Lsp1109I GCAGC 9 cut(s) 261, 394, 691, 1072, 1105, 1690, 1903, 1931, 2215
MaeI CTAG 6 cut(s) 483, 980, 1236, 1346, 1539, 2109
MaeII ACGT 2 cut(s) 427, 1242
MaeIII GTNAC 6 cut(s) 1371, 1508, 1758, 1802, 2262, 2269
MalI GATC 7 cut(s) 123, 637, 833, 976, 1053, 1611, 2100
MboI GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
MflI RGATCY 4 cut(s) 635, 831, 974, 1051
MhlI GDGCHC 3 cut(s) 790, 2004, 2193
MlsI TGGCCA 1 cut(s) 954
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 3 cut(s) 227, 729, 2063
Mox20I TGGCCA 1 cut(s) 954
Mph1103I ATGCAT 1 cut(s) 403
MscI TGGCCA 1 cut(s) 954
MseI TTAA 7 cut(s) 252, 552, 615, 737, 752, 938, 1836
MslI CAYNNNNRTG 5 cut(s) 1380, 1685, 1997, 2130, 2238
Msp20I TGGCCA 1 cut(s) 954
MspA1I CMGCKG 3 cut(s) 274, 596, 1309
MspI CCGG 2 cut(s) 1131, 1417
MspR9I CCNGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
Mva1269I GAATGC 4 cut(s) 381, 1237, 1851, 2091
MvaI CCWGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
NdeII GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
NheI GCTAGC 1 cut(s) 1235
NlaIV GGNNCC 5 cut(s) 539, 1053, 1342, 1421, 1889
NmuCI GTSAC 5 cut(s) 1371, 1508, 1758, 1802, 2262
NsiI ATGCAT 1 cut(s) 403
NspI RCATGY 4 cut(s) 80, 1018, 1754, 2122
OliI CACNNNNGTG 2 cut(s) 1685, 1997
PaeI GCATGC 1 cut(s) 80
PagI TCATGA 3 cut(s) 96, 2233, 2296
PasI CCCWGGG 1 cut(s) 927
PciI ACATGT 1 cut(s) 2118
PctI GAATGC 4 cut(s) 381, 1237, 1851, 2091
PfeI GAWTC 4 cut(s) 452, 650, 1361, 1819
PflMI CCANNNNNTGG 2 cut(s) 1901, 2185
PinAI ACCGGT 1 cut(s) 1130
PleI GAGTC 3 cut(s) 226, 728, 2062
PpsI GAGTC 3 cut(s) 226, 728, 2062
PscI ACATGT 1 cut(s) 2118
PshBI ATTAAT 1 cut(s) 1836
Psp124BI GAGCTC 1 cut(s) 2193
Psp1406I AACGTT 1 cut(s) 1242
Psp6I CCWGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
PspGI CCWGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
PspN4I GGNNCC 5 cut(s) 539, 1053, 1342, 1421, 1889
PspPI GGNCC 8 cut(s) 4, 347, 490, 747, 1100, 1151, 1321, 1984
PstI CTGCAG 2 cut(s) 1921, 1983
PstNI CAGNNNCTG 1 cut(s) 1925
PsuI RGATCY 4 cut(s) 635, 831, 974, 1051
PvuII CAGCTG 2 cut(s) 274, 1309
RsaI GTAC 5 cut(s) 44, 1074, 1129, 1135, 1408
RsaNI GTAC 5 cut(s) 43, 1073, 1128, 1134, 1407
RseI CAYNNNNRTG 5 cut(s) 1380, 1685, 1997, 2130, 2238
SacI GAGCTC 1 cut(s) 2193
SaqAI TTAA 7 cut(s) 252, 552, 615, 737, 752, 938, 1836
Sau3AI GATC 7 cut(s) 121, 635, 831, 974, 1051, 1609, 2098
Sau96I GGNCC 8 cut(s) 4, 347, 490, 747, 1100, 1151, 1321, 1984
SchI GAGTC 3 cut(s) 227, 729, 2063
ScrFI CCNGG 9 cut(s) 144, 519, 543, 690, 717, 777, 900, 928, 1197
SduI GDGCHC 3 cut(s) 790, 2004, 2193
SfcI CTRYAG 3 cut(s) 1586, 1917, 1979
SinI GGWCC 3 cut(s) 347, 1151, 1321
SmiI ATTTAAAT 1 cut(s) 939
SmiMI CAYNNNNRTG 5 cut(s) 1380, 1685, 1997, 2130, 2238
SphI GCATGC 1 cut(s) 80
SsiI CCGC 5 cut(s) 224, 557, 594, 772, 1087
SspI AATATT 2 cut(s) 1834, 1944
SspMI CTAG 6 cut(s) 483, 980, 1236, 1346, 1539, 2109
SstI GAGCTC 1 cut(s) 2193
StyD4I CCNGG 9 cut(s) 142, 517, 541, 688, 715, 775, 898, 926, 1195
StyI CCWWGG 1 cut(s) 340
SwaI ATTTAAAT 1 cut(s) 939
TaaI ACNGT 8 cut(s) 288, 825, 1127, 1147, 1687, 2224, 2240, 2262
TaiI ACGT 2 cut(s) 430, 1245
TaqI TCGA 4 cut(s) 477, 580, 762, 1636
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 2 cut(s) 42, 1072
TauI GCSGC 3 cut(s) 227, 560, 775
TfiI GAWTC 4 cut(s) 452, 650, 1361, 1819
Tru1I TTAA 7 cut(s) 252, 552, 615, 737, 752, 938, 1836
Tru9I TTAA 7 cut(s) 252, 552, 615, 737, 752, 938, 1836
TscAI CASTG 3 cut(s) 88, 553, 1983
TseFI GTSAC 5 cut(s) 1371, 1508, 1758, 1802, 2262
TseI GCWGC 9 cut(s) 274, 407, 679, 1060, 1118, 1703, 1916, 1919, 2228
Tsp45I GTSAC 5 cut(s) 1371, 1508, 1758, 1802, 2262
TspDTI ATGAA 7 cut(s) 77, 85, 446, 1095, 1146, 1479, 1662
TspGWI ACGGA 3 cut(s) 1218, 1286, 2296
TspRI CASTG 3 cut(s) 88, 553, 1983
Van91I CCANNNNNTGG 2 cut(s) 1901, 2185
VneI GTGCAC 2 cut(s) 786, 2000
VpaK11BI GGWCC 3 cut(s) 347, 1151, 1321
VspI ATTAAT 1 cut(s) 1836
XapI RAATTY 4 cut(s) 934, 940, 1222, 1648
XceI RCATGY 4 cut(s) 80, 1018, 1754, 2122
XcmI CCANNNNNNNNNTGG 4 cut(s) 400, 741, 1306, 1898
XspI CTAG 6 cut(s) 483, 980, 1236, 1346, 1539, 2109
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.