Rmu_co8509955.1_g000001

transcriptional co-repressor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8509955.1
OG0001113
Physical Location & Seq
Reverse (-)
1 .. 3515
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8509955.1_g000001.1.cds

Sequence Viewer

Length: 1441 bp
atggcgcagagtaattgggaagctgataagatgcttgatgtttatattcatgattatttgttgaaaaggaaattgactgcttctgcaaatacatttatgactgaagggaaggttgctacagatccagtagcaattgatgcaccaggaggattcctctttgaatggtggtctgttttctgggacatattcatagcaaggacaaatgagaagcactcagaggctgctgcatcttacattgaggcacagcaaattaagacgagggagcaacaacagttgcaaatgcagcagatgcagatattgcagcatcgtaatgctcagttacagcgtagagatccaaatgctttaaatgctataaactctgaaggggtaatggggcaaccttcagccagtgtgctagccatgaaaatgtatgaagaacgcatgaaacatcctcactcgatggatgctgaagcatccccaggtcttactgatgccaataggattgcccttctcaaatcagcttcaaatgcacaaggccagttgacacaaagcaattccggaaacatgtctgctgctttgcagcaaatgcaagcacgcaatcctttgaccactgacatcaaaagtgaagttaacttaggtacagctcagagaagtttgcctatggatccttcatcgatttatggacaagcaattttacagtcaaaatctggattgggtggtgcaggattgaatcaaggtgtcacaggtcttcctttgaagggttggcctcttactggaattgaccaattacgaccaaacttgggtgtacaagtacagaagtcaaattttcagacccaaagtcaattccttttagcacctcaacaacagcaagtcttggcacaagcccaggctcaggcacaaaacaacctgggaaattcaacaagctacggagatctggatcctcgtaggttttctggtttgcctaggagtggcatgaatgcaaaagatggtcaatctgcaatgcagtcaagttcaccaaagataaaaatgcctcagatgcaacagtcttcctcccactcccaacaacatgaccaattgcagcagcagccgttacaacagaataacagaaaaaggaaacaacactcttcttctggacctgccaacagcaacaacacgggaaacactgttggccgttcccctggttctccagcatcaactcacacaccaggtgatggaattaacacagccagtagtctgcagcatgttaacaacattccgaaaagcttgatgatgtatggtccagaaggaacaggaggtcttccttcatcttccaatttattggaagacatggaacgatttggagatgttggtaccttagaagataatgtggaatcgtttttgtcacctgatgggggagatgggagggatgtatatgggacactgaagcagagtcctagtgagcccaggaaggagtcttctaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0001558 GO:0001666 GO:0003002 GO:0003006 GO:0005975 GO:0005976 GO:0006355 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009798 GO:0009845 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009909 GO:0009943 GO:0009944 GO:0009955 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010073 GO:0010154 GO:0010191 GO:0010214 GO:0010243 GO:0010272 GO:0010393 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0022414 GO:0022603 GO:0022604 GO:0030307 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0033554 GO:0036293 GO:0040008 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0044237 GO:0044238 GO:0045892 GO:0045927 GO:0045934 GO:0045995 GO:0046677 GO:0046898 GO:0048316 GO:0048359 GO:0048507 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048608 GO:0048609 GO:0048638 GO:0048639 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051510 GO:0051512 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0060992 GO:0061458 GO:0065001 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0071704 GO:0080001 GO:0080090 GO:0090351 GO:0097305 GO:1901654 GO:1901698 GO:1901700 GO:1902074 GO:1902183 GO:1902679 GO:1903506 GO:1903507 GO:2000024 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LisH WD40

Protein Analysis

480

Amino Acids

52.17

Weight (kDa)

7.18

Isoelectric Point (pI)

57.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1123
Acc65I GGTACC 1 cut(s) 1328
AccB1I GGYRCC 1 cut(s) 1328
AccB7I CCANNNNNTGG 1 cut(s) 1190
AccIII TCCGGA 1 cut(s) 536
AclWI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
AcoI YGGCCR 1 cut(s) 1147
AcsI RAATTY 2 cut(s) 802, 892
AcuI CTGAAG 5 cut(s) 123, 366, 381, 468, 1421
AdeI CACNNNGTG 1 cut(s) 1187
AfaI GTAC 4 cut(s) 619, 786, 792, 1330
AfiI CCNNNNNNNGG 7 cut(s) 737, 752, 779, 871, 947, 1190, 1370
AflIII ACRYGT 1 cut(s) 543
AgsI TTSAA 6 cut(s) 64, 161, 504, 709, 736, 897
AhdI GACNNNNNGTC 1 cut(s) 816
AjnI CCWGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
AluBI AGCT 5 cut(s) 23, 500, 623, 903, 1242
AluI AGCT 5 cut(s) 23, 500, 623, 903, 1242
AlwI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
AlwNI CAGNNNCTG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 536
AoxI GGCC 3 cut(s) 514, 743, 1147
ApoI RAATTY 2 cut(s) 802, 892
Asp718I GGTACC 1 cut(s) 1328
AspA2I CCTAGG 1 cut(s) 941
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 1112, 1256
AsuHPI GGTGA 3 cut(s) 984, 1199, 1353
AsuNHI GCTAGC 1 cut(s) 394
AvaII GGWCC 2 cut(s) 1112, 1256
AvrII CCTAGG 1 cut(s) 941
BamHI GGATCC 2 cut(s) 643, 916
BanI GGYRCC 1 cut(s) 1328
BanII GRGCYC 1 cut(s) 1422
BbsI GAAGAC 5 cut(s) 719, 1017, 1268, 1308, 1425
BccI CCATC 5 cut(s) 433, 959, 1184, 1361, 1370
BceAI ACGGC 2 cut(s) 1051, 1134
BciT130I CCWGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
BfaI CTAG 3 cut(s) 395, 942, 1413
BfmI CTRYAG 2 cut(s) 117, 1214
BfuAI ACCTGC 1 cut(s) 1123
BglII AGATCT 1 cut(s) 910
BlnI CCTAGG 1 cut(s) 941
Bme1390I CCNGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
Bme18I GGWCC 2 cut(s) 1112, 1256
BmeRI GACNNNNNGTC 1 cut(s) 816
BmgT120I GGNCC 2 cut(s) 1112, 1256
BmiI GGNNCC 3 cut(s) 645, 918, 1330
BmrFI CCNGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
BmtI GCTAGC 1 cut(s) 398
BpiI GAAGAC 5 cut(s) 719, 1017, 1268, 1308, 1425
BplI GAGNNNNNCTC 4 cut(s) 138, 170, 197, 229
BpmI CTGGAG 1 cut(s) 1149
Bpu10I CCTNAGC 1 cut(s) 870
Bsa29I ATCGAT 1 cut(s) 653
BsaBI GATNNNNATC 1 cut(s) 915
BsaJI CCNNGG 6 cut(s) 457, 864, 886, 941, 1156, 1421
BsaWI WCCGGW 1 cut(s) 536
Bsc4I CCNNNNNNNGG 7 cut(s) 737, 752, 779, 871, 947, 1190, 1370
Bse1I ACTGG 5 cut(s) 125, 387, 517, 757, 1206
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 1 cut(s) 915
BseAI TCCGGA 1 cut(s) 536
BseBI CCWGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
BseCI ATCGAT 1 cut(s) 653
BseDI CCNNGG 6 cut(s) 457, 864, 886, 941, 1156, 1421
BseGI GGATG 4 cut(s) 427, 448, 452, 1390
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 7 cut(s) 737, 752, 779, 871, 947, 1190, 1370
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 5 cut(s) 228, 329, 638, 884, 1025
BseNI ACTGG 5 cut(s) 125, 387, 517, 757, 1206
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 3 cut(s) 516, 745, 1149
BshNI GGYRCC 1 cut(s) 1328
BshVI ATCGAT 1 cut(s) 653
BsiSI CCGG 1 cut(s) 537
BslFI GGGAC 2 cut(s) 194, 1408
BslI CCNNNNNNNGG 7 cut(s) 737, 752, 779, 871, 947, 1190, 1370
BsmFI GGGAC 2 cut(s) 194, 1408
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 516, 745, 1149
Bsp1286I GDGCHC 1 cut(s) 1422
Bsp13I TCCGGA 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 784
Bsp143I GATC 5 cut(s) 121, 331, 643, 910, 916
BspANI GGCC 3 cut(s) 516, 745, 1149
BspCNI CTCAG 5 cut(s) 227, 328, 637, 883, 1024
BspDI ATCGAT 1 cut(s) 653
BspEI TCCGGA 1 cut(s) 536
BspHI TCATGA 1 cut(s) 49
BspLI GGNNCC 3 cut(s) 645, 918, 1330
BspMAI CTGCAG 1 cut(s) 1218
BspMI ACCTGC 1 cut(s) 1123
BspOI GCTAGC 1 cut(s) 398
BspPI GGATC 6 cut(s) 116, 326, 638, 651, 911, 924
BspT107I GGYRCC 1 cut(s) 1328
BsrDI GCAATG 1 cut(s) 984
BsrGI TGTACA 1 cut(s) 784
BsrI ACTGG 5 cut(s) 125, 387, 517, 757, 1206
BssECI CCNNGG 6 cut(s) 457, 864, 886, 941, 1156, 1421
BssMI GATC 5 cut(s) 121, 331, 643, 910, 916
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
Bst4CI ACNGT 4 cut(s) 273, 678, 1023, 1144
Bst6I CTCTTC 1 cut(s) 1108
BstAPI GCANNNNNTGC 4 cut(s) 137, 289, 298, 565
BstAUI TGTACA 1 cut(s) 784
BstC8I GCNNGC 3 cut(s) 396, 570, 574
BstDEI CTNAG 7 cut(s) 214, 315, 613, 624, 870, 1011, 1333
BstF5I GGATG 4 cut(s) 427, 448, 452, 1390
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 124, 334, 646, 913, 919
BstMBI GATC 5 cut(s) 121, 331, 643, 910, 916
BstMWI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
BstNI CCWGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
BstNSI RCATGY 2 cut(s) 547, 1223
BstSCI CCNGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
BstSFI CTRYAG 2 cut(s) 117, 1214
BstV2I GAAGAC 5 cut(s) 719, 1017, 1268, 1308, 1425
BstX2I RGATCY 5 cut(s) 121, 331, 643, 910, 916
BstXI CCANNNNNNTGG 1 cut(s) 1297
BstYI RGATCY 5 cut(s) 121, 331, 643, 910, 916
Bsu15I ATCGAT 1 cut(s) 653
BsuRI GGCC 3 cut(s) 516, 745, 1149
BsuTUI ATCGAT 1 cut(s) 653
BtsCI GGATG 4 cut(s) 427, 448, 452, 1390
BtsIMutI CAGTG 4 cut(s) 394, 588, 1140, 1397
BveI ACCTGC 1 cut(s) 1123
Cac8I GCNNGC 3 cut(s) 396, 570, 574
CaiI CAGNNNCTG 1 cut(s) 221
CciI TCATGA 1 cut(s) 49
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 1112, 1256
ClaI ATCGAT 1 cut(s) 653
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 4 cut(s) 618, 785, 791, 1329
CviAII CATG 8 cut(s) 50, 400, 421, 544, 952, 1046, 1220, 1306
CviQI GTAC 4 cut(s) 618, 785, 791, 1329
DdeI CTNAG 7 cut(s) 214, 315, 613, 624, 870, 1011, 1333
DpnI GATC 5 cut(s) 123, 333, 645, 912, 918
DpnII GATC 5 cut(s) 121, 331, 643, 910, 916
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 1187
DriI GACNNNNNGTC 1 cut(s) 816
EaeI YGGCCR 1 cut(s) 1147
Eam1104I CTCTTC 1 cut(s) 1108
Eam1105I GACNNNNNGTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 1108
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 1422
Eco47I GGWCC 2 cut(s) 1112, 1256
Eco57I CTGAAG 5 cut(s) 123, 366, 381, 468, 1421
EcoRII CCWGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
EcoT14I CCWWGG 1 cut(s) 941
EcoT38I GRGCYC 1 cut(s) 1422
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 8 cut(s) 53, 403, 424, 547, 955, 1049, 1223, 1309
FaqI GGGAC 2 cut(s) 194, 1408
FatI CATG 8 cut(s) 49, 399, 420, 543, 951, 1045, 1219, 1305
FokI GGATG 4 cut(s) 414, 439, 455, 1397
FriOI GRGCYC 1 cut(s) 1422
FspBI CTAG 3 cut(s) 395, 942, 1413
GlaI GCGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 3 cut(s) 516, 745, 1149
HapII CCGG 1 cut(s) 537
HhaI GCGC 1 cut(s) 7
Hin1II CATG 8 cut(s) 53, 403, 424, 547, 955, 1049, 1223, 1309
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 522, 610, 1225
HindII GTYRAC 3 cut(s) 522, 610, 1225
HindIII AAGCTT 1 cut(s) 1240
HinfI GANTC 5 cut(s) 150, 709, 1349, 1408, 1430
HpaI GTTAAC 2 cut(s) 610, 1225
HpaII CCGG 1 cut(s) 537
HphI GGTGA 3 cut(s) 984, 1199, 1353
Hpy166II GTNNAC 5 cut(s) 522, 610, 785, 992, 1225
Hpy188I TCNGA 6 cut(s) 217, 361, 627, 810, 1014, 1236
Hpy188III TCNNGA 6 cut(s) 50, 537, 687, 914, 1110, 1259
Hpy8I GTNNAC 5 cut(s) 522, 610, 785, 992, 1225
HpyCH4III ACNGT 4 cut(s) 273, 678, 1023, 1144
HpyF10VI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
HpyF3I CTNAG 7 cut(s) 214, 315, 613, 624, 870, 1011, 1333
Hsp92II CATG 8 cut(s) 53, 403, 424, 547, 955, 1049, 1223, 1309
HspAI GCGC 1 cut(s) 5
Kpn2I TCCGGA 1 cut(s) 536
KpnI GGTACC 1 cut(s) 1332
KspAI GTTAAC 2 cut(s) 610, 1225
Kzo9I GATC 5 cut(s) 121, 331, 643, 910, 916
LmnI GCTCC 1 cut(s) 262
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 3 cut(s) 395, 942, 1413
MaeIII GTNAC 4 cut(s) 318, 718, 1068, 1359
MalI GATC 5 cut(s) 123, 333, 645, 912, 918
MboI GATC 5 cut(s) 121, 331, 643, 910, 916
MfeI CAATTG 2 cut(s) 132, 1052
MflI RGATCY 5 cut(s) 121, 331, 643, 910, 916
MhlI GDGCHC 1 cut(s) 1422
MlyI GAGTC 2 cut(s) 1417, 1439
MroI TCCGGA 1 cut(s) 536
MseI TTAA 5 cut(s) 252, 344, 609, 1197, 1224
MslI CAYNNNNRTG 2 cut(s) 309, 404
MspI CCGG 1 cut(s) 537
MspR9I CCNGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
MunI CAATTG 2 cut(s) 132, 1052
Mva1269I GAATGC 1 cut(s) 961
MvaI CCWGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
MwoI GCNNNNNNNGC 9 cut(s) 137, 283, 289, 298, 347, 506, 565, 1015, 1063
NdeII GATC 5 cut(s) 121, 331, 643, 910, 916
NheI GCTAGC 1 cut(s) 394
NlaIII CATG 8 cut(s) 53, 403, 424, 547, 955, 1049, 1223, 1309
NlaIV GGNNCC 3 cut(s) 645, 918, 1330
NmuCI GTSAC 2 cut(s) 718, 1359
NspI RCATGY 2 cut(s) 547, 1223
PagI TCATGA 1 cut(s) 49
PciI ACATGT 1 cut(s) 543
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 3 cut(s) 150, 709, 1349
PflMI CCANNNNNTGG 1 cut(s) 1190
PleI GAGTC 2 cut(s) 1416, 1438
PpsI GAGTC 2 cut(s) 1416, 1438
PscI ACATGT 1 cut(s) 543
Psp6I CCWGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
PspGI CCWGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
PspN4I GGNNCC 3 cut(s) 645, 918, 1330
PspPI GGNCC 2 cut(s) 1112, 1256
PstI CTGCAG 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 221
PsuI RGATCY 5 cut(s) 121, 331, 643, 910, 916
RsaI GTAC 4 cut(s) 619, 786, 792, 1330
RsaNI GTAC 4 cut(s) 618, 785, 791, 1329
RseI CAYNNNNRTG 2 cut(s) 309, 404
SaqAI TTAA 5 cut(s) 252, 344, 609, 1197, 1224
Sau3AI GATC 5 cut(s) 121, 331, 643, 910, 916
Sau96I GGNCC 2 cut(s) 1112, 1256
SchI GAGTC 2 cut(s) 1417, 1439
ScrFI CCNGG 7 cut(s) 144, 459, 866, 887, 1158, 1185, 1423
SduI GDGCHC 1 cut(s) 1422
SexAI ACCWGGT 1 cut(s) 1183
SfcI CTRYAG 2 cut(s) 117, 1214
SinI GGWCC 2 cut(s) 1112, 1256
SmiMI CAYNNNNRTG 2 cut(s) 309, 404
SspMI CTAG 3 cut(s) 395, 942, 1413
StyD4I CCNGG 7 cut(s) 142, 457, 864, 885, 1156, 1183, 1421
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 4 cut(s) 273, 678, 1023, 1144
TaqI TCGA 2 cut(s) 437, 653
TatI WGTACW 2 cut(s) 784, 790
TfiI GAWTC 3 cut(s) 150, 709, 1349
Tru1I TTAA 5 cut(s) 252, 344, 609, 1197, 1224
Tru9I TTAA 5 cut(s) 252, 344, 609, 1197, 1224
TscAI CASTG 4 cut(s) 394, 595, 1147, 1404
TseFI GTSAC 2 cut(s) 718, 1359
Tsp45I GTSAC 2 cut(s) 718, 1359
TspDTI ATGAA 8 cut(s) 38, 178, 416, 426, 437, 639, 968, 1272
TspGWI ACGGA 1 cut(s) 921
TspRI CASTG 4 cut(s) 394, 595, 1147, 1404
Van91I CCANNNNNTGG 1 cut(s) 1190
VpaK11BI GGWCC 2 cut(s) 1112, 1256
XapI RAATTY 2 cut(s) 802, 892
XceI RCATGY 2 cut(s) 547, 1223
XmaJI CCTAGG 1 cut(s) 941
XspI CTAG 3 cut(s) 395, 942, 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.