Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008469

Physical Location & Seq

Genomic Coordinates Forward (+)

17640756 .. 17641991

Gene Structure 1236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGCAGAGGAGGTTCACAAGGTTATTTTGAATGTATACGACTTAAGCCAAGGATTAGCTAGGCAAATGTCCACGGCTTTCTTGGGGAAAGCCATCGAGGGCATATGGCACACAGGATTGGTGGTTTATGGTAATGAGTACTATTTTGGGGGAGGCATACAACATGCTCCTGCTGGGTCAACACCGTATGGGACACCAATTAAAGTGGTAGATTTGGGTGTCACACATGTGCCCAAGGATGTATTTGAGATGTATTTGCAGGAGATCGGTCCCCGGTATACTGCGGAAACCTATAGTTTGCTTACTCACAATTGCAACAACTTTAGCAATGAGGTTGCTCAGTTTTTGGTGGGTGCAACCATTCCGGACTATATTTTGCAGCTTCCTAATGAAGTTATGGGCAGTCCAATGGGAGCTCTTATTATGCCCATGATACAGAATCTGGAAGCAACATTGAGAAGTGGTGCAGCTCCTCAAGCTCCGCAGTTCAGGCCTACTTCCATGGTGCGAACGACCACTAGCACTGCAAAACCCTTGAGCACTTCCAAAAAAGAGATTGGTGACAAATCAAAATCTGGAGCGCAGCAGCGCACCAAGTCAGAGGAGCAGGGAGCATCAGGAAGTGTGGTTAAACCTCCCAACGGAGTTGTAGATCCTCTCGGGGATGCTCGAAGTAAGGTGCAAAAGGAGATCTCTGCTGAGTTTGCTGCAATCATGGCAAGTGGAACACTGCGGGCAAGCGAGGCTGCAGCGCTTGCAACAAGAAGAGTGATGCAGAGATATGGGCATTCAGGTACCACGATGTCACAGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

272

Amino Acids

29.04

Weight (kDa)

7.83

Isoelectric Point (pI)

38.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07090 AT3G07090
fragaria_vesca	FvH4_4g33290
malus_domestica	MD05G1176500.v1.1 MD10G1165200.v1.1
prunus_persica	Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1
pyrus_communis	pycom10g14250
rosa_chinensis	RchiOBHm_Chr6g0284951
rosa_laevigata	RLG00000012697
rosa_multiflora	Rmu_co8182794.1_g000001 Rmu_sc0004961.1_g000012 Rmu_sc0036899.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183930 Rroxscaffold_7G00184200
rosa_rugosa	Rorug06G0169000 Rorug06G0169100
rosa_samantha	Rh6AG280900 Rh6BG281600 Rh6CG283200 Rh6DG276300
rosa_wichuraiana	Rw6G024140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	794
AccB1I	GGYRCC	1 cut(s)	794
AccI	GTMKAC	2 cut(s)	36, 278
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	3 cut(s)	284, 482, 733
AclWI	GGATC	1 cut(s)	647
AfaI	GTAC	2 cut(s)	140, 796
AfeI	AGCGCT	1 cut(s)	753
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflII	CTTAAG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	59, 382, 416, 470, 479
AluI	AGCT	5 cut(s)	59, 382, 416, 470, 479
Alw21I	GWGCWC	2 cut(s)	418, 542
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	442
Ama87I	CYCGRG	1 cut(s)	659
Aor13HI	TCCGGA	1 cut(s)	364
Aor51HI	AGCGCT	1 cut(s)	753
AoxI	GGCC	1 cut(s)	491
ApeKI	GCWGC	7 cut(s)	379, 467, 583, 586, 707, 746, 749
Asp718I	GGTACC	1 cut(s)	794
AspLEI	GCGC	3 cut(s)	583, 591, 754
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	1 cut(s)	418
Bbv12I	GWGCWC	2 cut(s)	418, 542
BbvI	GCAGC	7 cut(s)	391, 479, 595, 598, 694, 733, 761
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	274
BfaI	CTAG	2 cut(s)	60, 519
BfmI	CTRYAG	2 cut(s)	292, 747
BfoI	RGCGCY	1 cut(s)	755
BfrI	CTTAAG	1 cut(s)	43
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	7 cut(s)	380, 468, 584, 587, 708, 747, 750
BlsI	GCNGC	7 cut(s)	381, 469, 585, 588, 709, 748, 751
BmcAI	AGTACT	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	274
Bme18I	GGWCC	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	271, 796
BmrFI	CCNGG	1 cut(s)	274
BmsI	GCATC	3 cut(s)	623, 655, 762
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	2 cut(s)	459, 556
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	5 cut(s)	49, 72, 234, 272, 501
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse3DI	GCAATG	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	364
BseDI	CCNNGG	5 cut(s)	49, 72, 234, 272, 501
BseGI	GGATG	2 cut(s)	244, 670
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	353, 690
BseRI	GAGGAG	3 cut(s)	23, 462, 617
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	7 cut(s)	391, 479, 595, 598, 694, 733, 761
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	486
BshFI	GGCC	1 cut(s)	493
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	2 cut(s)	418, 542
BsiHKCI	CYCGRG	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	274, 365
BslFI	GGGAC	2 cut(s)	205, 255
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmFI	GGGAC	2 cut(s)	205, 255
BsmI	GAATGC	1 cut(s)	787
BsnI	GGCC	1 cut(s)	493
BsoBI	CYCGRG	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	234, 418, 542
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	3 cut(s)	264, 652, 690
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	3 cut(s)	284, 482, 733
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	2 cut(s)	352, 691
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	2 cut(s)	271, 796
BspMAI	CTGCAG	1 cut(s)	751
BspPI	GGATC	1 cut(s)	647
BspT107I	GGYRCC	1 cut(s)	794
BspTI	CTTAAG	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	334
BssECI	CCNNGG	5 cut(s)	49, 72, 234, 272, 501
BssMI	GATC	3 cut(s)	264, 652, 690
BssNAI	GTATAC	2 cut(s)	37, 279
BssT1I	CCWWGG	3 cut(s)	49, 234, 501
Bst1107I	GTATAC	2 cut(s)	37, 279
Bst4CI	ACNGT	1 cut(s)	186
Bst6I	CTCTTC	1 cut(s)	760
BstAFI	CTTAAG	1 cut(s)	43
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	3 cut(s)	735, 739, 756
BstDEI	CTNAG	2 cut(s)	339, 699
BstDSI	CCRYGG	2 cut(s)	72, 501
BstF5I	GGATG	2 cut(s)	244, 670
BstH2I	RGCGCY	1 cut(s)	755
BstHHI	GCGC	3 cut(s)	583, 591, 754
BstKTI	GATC	3 cut(s)	267, 655, 693
BstMBI	GATC	3 cut(s)	264, 652, 690
BstMWI	GCNNNNNNNGC	6 cut(s)	476, 490, 704, 716, 743, 755
BstNSI	RCATGY	2 cut(s)	167, 230
BstSCI	CCNGG	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	292, 747
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	7 cut(s)	391, 479, 595, 598, 694, 733, 761
BstX2I	RGATCY	2 cut(s)	652, 690
BstYI	RGATCY	2 cut(s)	652, 690
BstZ17I	GTATAC	2 cut(s)	37, 279
BsuRI	GGCC	1 cut(s)	493
BtgI	CCRYGG	2 cut(s)	72, 501
BtsCI	GGATG	2 cut(s)	244, 670
BtsI	GCAGTG	2 cut(s)	522, 728
BtsIMutI	CAGTG	2 cut(s)	522, 728
Cac8I	GCNNGC	3 cut(s)	735, 739, 756
CaiI	CAGNNNCTG	1 cut(s)	442
CfoI	GCGC	3 cut(s)	583, 591, 754
Cfr13I	GGNCC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	139, 795
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	5 cut(s)	164, 227, 430, 502, 715
CviQI	GTAC	2 cut(s)	139, 795
DdeI	CTNAG	2 cut(s)	339, 699
DpnI	GATC	3 cut(s)	266, 654, 692
DpnII	GATC	3 cut(s)	264, 652, 690
Eam1104I	CTCTTC	1 cut(s)	760
EarI	CTCTTC	1 cut(s)	760
Ecl136II	GAGCTC	1 cut(s)	416
Eco130I	CCWWGG	3 cut(s)	49, 234, 501
Eco147I	AGGCCT	1 cut(s)	493
Eco24I	GRGCYC	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	269
Eco47III	AGCGCT	1 cut(s)	753
Eco53kI	GAGCTC	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	659
EcoICRI	GAGCTC	1 cut(s)	416
EcoT14I	CCWWGG	3 cut(s)	49, 234, 501
EcoT38I	GRGCYC	1 cut(s)	418
ErhI	CCWWGG	3 cut(s)	49, 234, 501
FaeI	CATG	5 cut(s)	167, 230, 433, 505, 718
FaqI	GGGAC	2 cut(s)	205, 255
FatI	CATG	5 cut(s)	163, 226, 429, 501, 714
FauI	CCCGC	1 cut(s)	726
FauNDI	CATATG	1 cut(s)	104
FblI	GTMKAC	2 cut(s)	36, 278
Fnu4HI	GCNGC	7 cut(s)	380, 468, 584, 587, 708, 747, 750
FokI	GGATG	2 cut(s)	251, 677
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	7 cut(s)	380, 468, 584, 587, 708, 747, 750
FspBI	CTAG	2 cut(s)	60, 519
GlaI	GCGC	3 cut(s)	582, 590, 753
GluI	GCNGC	7 cut(s)	380, 468, 584, 587, 708, 747, 750
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	597
HaeII	RGCGCY	1 cut(s)	755
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	2 cut(s)	274, 365
HhaI	GCGC	3 cut(s)	583, 591, 754
Hin1II	CATG	5 cut(s)	167, 230, 433, 505, 718
Hin6I	GCGC	3 cut(s)	581, 589, 752
HinP1I	GCGC	3 cut(s)	581, 589, 752
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HinfI	GANTC	1 cut(s)	439
HpaII	CCGG	2 cut(s)	274, 365
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	5 cut(s)	16, 37, 72, 180, 279
Hpy188I	TCNGA	1 cut(s)	601
Hpy188III	TCNNGA	4 cut(s)	365, 443, 576, 618
Hpy8I	GTNNAC	5 cut(s)	16, 37, 72, 180, 279
HpyCH4III	ACNGT	1 cut(s)	186
HpyF10VI	GCNNNNNNNGC	6 cut(s)	476, 490, 704, 716, 743, 755
HpyF3I	CTNAG	2 cut(s)	339, 699
Hsp92II	CATG	5 cut(s)	167, 230, 433, 505, 718
HspAI	GCGC	3 cut(s)	581, 589, 752
Kpn2I	TCCGGA	1 cut(s)	364
KpnI	GGTACC	1 cut(s)	798
Kzo9I	GATC	3 cut(s)	264, 652, 690
LmnI	GCTCC	7 cut(s)	172, 413, 475, 484, 578, 604, 611
Lsp1109I	GCAGC	7 cut(s)	391, 479, 595, 598, 694, 733, 761
LweI	GCATC	3 cut(s)	623, 655, 762
MaeI	CTAG	2 cut(s)	60, 519
MaeIII	GTNAC	3 cut(s)	220, 560, 804
MalI	GATC	3 cut(s)	266, 654, 692
MboI	GATC	3 cut(s)	264, 652, 690
MboII	GAAGA	1 cut(s)	777
MfeI	CAATTG	1 cut(s)	310
MflI	RGATCY	2 cut(s)	652, 690
MhlI	GDGCHC	3 cut(s)	234, 418, 542
MluCI	AATT	2 cut(s)	198, 310
MnlI	CCTC	9 cut(s)	4, 91, 146, 325, 483, 595, 645, 666, 736
MroI	TCCGGA	1 cut(s)	364
MseI	TTAA	4 cut(s)	44, 201, 630, 814
MslI	CAYNNNNRTG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	2 cut(s)	274, 365
MspR9I	CCNGG	1 cut(s)	274
MunI	CAATTG	1 cut(s)	310
Mva1269I	GAATGC	1 cut(s)	787
MwoI	GCNNNNNNNGC	6 cut(s)	476, 490, 704, 716, 743, 755
NciI	CCSGG	1 cut(s)	274
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	104
NdeII	GATC	3 cut(s)	264, 652, 690
NlaIII	CATG	5 cut(s)	167, 230, 433, 505, 718
NlaIV	GGNNCC	2 cut(s)	271, 796
NmuCI	GTSAC	3 cut(s)	220, 560, 804
NspI	RCATGY	2 cut(s)	167, 230
OliI	CACNNNNGTG	1 cut(s)	227
PceI	AGGCCT	1 cut(s)	493
PciI	ACATGT	1 cut(s)	226
PctI	GAATGC	1 cut(s)	787
PfeI	GAWTC	1 cut(s)	439
PkrI	GCNGC	7 cut(s)	381, 469, 585, 588, 709, 748, 751
PscI	ACATGT	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	271, 796
PspPI	GGNCC	1 cut(s)	269
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	2 cut(s)	652, 690
RsaI	GTAC	2 cut(s)	140, 796
RsaNI	GTAC	2 cut(s)	139, 795
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	418
SaqAI	TTAA	4 cut(s)	44, 201, 630, 814
SatI	GCNGC	7 cut(s)	380, 468, 584, 587, 708, 747, 750
Sau3AI	GATC	3 cut(s)	264, 652, 690
Sau96I	GGNCC	1 cut(s)	269
ScaI	AGTACT	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	274
SduI	GDGCHC	3 cut(s)	234, 418, 542
SfaNI	GCATC	3 cut(s)	623, 655, 762
SfcI	CTRYAG	2 cut(s)	292, 747
SinI	GGWCC	1 cut(s)	269
SmiMI	CAYNNNNRTG	1 cut(s)	227
SmlI	CTYRAG	3 cut(s)	43, 474, 535
SmoI	CTYRAG	3 cut(s)	43, 474, 535
Sse9I	AATT	2 cut(s)	198, 310
SseBI	AGGCCT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	284, 482, 733
SspMI	CTAG	2 cut(s)	60, 519
SstI	GAGCTC	1 cut(s)	418
StuI	AGGCCT	1 cut(s)	493
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	49, 234, 501
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	96, 670
TaqII	GACCGA	1 cut(s)	257
TasI	AATT	2 cut(s)	198, 310
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	439
Tru1I	TTAA	4 cut(s)	44, 201, 630, 814
Tru9I	TTAA	4 cut(s)	44, 201, 630, 814
TscAI	CASTG	2 cut(s)	529, 735
TseFI	GTSAC	3 cut(s)	220, 560, 804
TseI	GCWGC	7 cut(s)	379, 467, 583, 586, 707, 746, 749
Tsp45I	GTSAC	3 cut(s)	220, 560, 804
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	2 cut(s)	529, 735
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	269
XceI	RCATGY	2 cut(s)	167, 230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	79
XmiI	GTMKAC	2 cut(s)	36, 278
XspI	CTAG	2 cut(s)	60, 519
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.