Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8182794.1

Orthogroup ID

OG0008469

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 657

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8182794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

gagggtcatagggttactttgaatgtatatgatctaagccaaggtctagctagacagatgtctatggcattcatagggaaggccattgagggcatatggcatacaggagtctcagtttacggtaacgagtactattttgggggaggcatacaacacgctcctgctggatcgacaccatatgggacaccaattcgggtggtagaattaggtgaaacacatgtccccaaggatgtttttgagtcgtatttacaggagatcagtccccgatatactgctgagacctatagtcttctaactcacaattgcaataactttagcaatgaggttgctcagtttttggttggtgcaaccatacccgactatattctgcagcttcctaatgaaattatgagcagtccaatgggagctcttatatgtaagttttttgatagccggtctaagatttattgtgtctttcttgtggagtttcttttgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C97

Protein Analysis

159

Amino Acids

17.76

Weight (kDa)

5.24

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008469)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07090 AT3G07090
fragaria_vesca	FvH4_4g33290
malus_domestica	MD05G1176500.v1.1 MD10G1165200.v1.1
prunus_persica	Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1 Prupe.8G203600_v2.0.a1
pyrus_communis	pycom10g14250
rosa_chinensis	RchiOBHm_Chr6g0284951
rosa_laevigata	RLG00000012697
rosa_multiflora	Rmu_co8182794.1_g000001 Rmu_sc0004961.1_g000012 Rmu_sc0036899.1_g000001
rosa_roxburghii	Rroxscaffold_7G00183930 Rroxscaffold_7G00184200
rosa_rugosa	Rorug06G0169000 Rorug06G0169100
rosa_samantha	Rh6AG280900 Rh6BG281600 Rh6CG283200 Rh6DG276300
rosa_wichuraiana	Rw6G024140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	175
AfaI	GTAC	1 cut(s)	131
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	285
AluBI	AGCT	3 cut(s)	50, 373, 407
AluI	AGCT	3 cut(s)	50, 373, 407
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	115, 272
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	409
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	115, 272
BfaI	CTAG	2 cut(s)	47, 51
BfmI	CTRYAG	2 cut(s)	283, 368
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
BmcAI	AGTACT	1 cut(s)	131
BmeRI	GACNNNNNGTC	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	40, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse118I	RCCGGY	1 cut(s)	432
Bse3DI	GCAATG	1 cut(s)	325
BseDI	CCNNGG	2 cut(s)	40, 225
BseGI	GGATG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	3 cut(s)	126, 267, 344
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	433
BslFI	GGGAC	3 cut(s)	196, 206, 246
BsmAI	GTCTC	2 cut(s)	115, 272
BsmFI	GGGAC	3 cut(s)	196, 206, 246
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	31, 167, 255
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	3 cut(s)	125, 268, 343
BspMAI	CTGCAG	1 cut(s)	372
BspPI	GGATC	1 cut(s)	175
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	1 cut(s)	432
BssAI	RCCGGY	1 cut(s)	432
BssECI	CCNNGG	2 cut(s)	40, 225
BssMI	GATC	3 cut(s)	31, 167, 255
BssT1I	CCWWGG	2 cut(s)	40, 225
Bst4CI	ACNGT	1 cut(s)	122
BstDEI	CTNAG	5 cut(s)	35, 112, 276, 330, 438
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	3 cut(s)	34, 170, 258
BstMAI	GTCTC	2 cut(s)	115, 272
BstMBI	GATC	3 cut(s)	31, 167, 255
BstNSI	RCATGY	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	58
BstSFI	CTRYAG	2 cut(s)	283, 368
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	235
Cfr10I	RCCGGY	1 cut(s)	432
Csp6I	GTAC	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	177, 212
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	6 cut(s)	39, 50, 83, 373, 407, 432
CviKI_1	RGCY	6 cut(s)	39, 50, 83, 373, 407, 432
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	5 cut(s)	35, 112, 276, 330, 438
DpnI	GATC	3 cut(s)	33, 169, 257
DpnII	GATC	3 cut(s)	31, 167, 255
DriI	GACNNNNNGTC	1 cut(s)	285
Eam1105I	GACNNNNNGTC	1 cut(s)	285
Ecl136II	GAGCTC	1 cut(s)	407
Eco130I	CCWWGG	2 cut(s)	40, 225
Eco24I	GRGCYC	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	272
Eco53kI	GAGCTC	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	40, 225
EcoT38I	GRGCYC	1 cut(s)	409
ErhI	CCWWGG	2 cut(s)	40, 225
FaeI	CATG	1 cut(s)	221
FaqI	GGGAC	3 cut(s)	196, 206, 246
FatI	CATG	1 cut(s)	217
FauNDI	CATATG	2 cut(s)	95, 178
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	1 cut(s)	409
Fsp4HI	GCNGC	1 cut(s)	371
FspBI	CTAG	2 cut(s)	47, 51
GluI	GCNGC	1 cut(s)	371
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	2 cut(s)	108, 239
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	118
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	306, 347, 370
HpyF3I	CTNAG	5 cut(s)	35, 112, 276, 330, 438
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	3 cut(s)	31, 167, 255
LmnI	GCTCC	2 cut(s)	163, 404
LpnPI	CCDG	5 cut(s)	90, 150, 174, 236, 446
Lsp1109I	GCAGC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	47, 51
MaeIII	GTNAC	2 cut(s)	13, 122
MalI	GATC	3 cut(s)	33, 169, 257
MboI	GATC	3 cut(s)	31, 167, 255
MboII	GAAGA	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	301
MhlI	GDGCHC	1 cut(s)	409
MluCI	AATT	4 cut(s)	189, 203, 301, 384
MlyI	GAGTC	2 cut(s)	117, 248
MnlI	CCTC	3 cut(s)	82, 137, 316
MseI	TTAA	1 cut(s)	478
MspI	CCGG	1 cut(s)	433
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	1 cut(s)	68
NdeI	CATATG	2 cut(s)	95, 178
NdeII	GATC	3 cut(s)	31, 167, 255
NlaIII	CATG	1 cut(s)	221
NspI	RCATGY	1 cut(s)	221
PciI	ACATGT	1 cut(s)	217
PctI	GAATGC	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	2 cut(s)	116, 247
PpsI	GAGTC	2 cut(s)	116, 247
PscI	ACATGT	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	58
Psp124BI	GAGCTC	1 cut(s)	409
PstI	CTGCAG	1 cut(s)	372
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	409
SaqAI	TTAA	1 cut(s)	478
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	3 cut(s)	31, 167, 255
ScaI	AGTACT	1 cut(s)	131
SchI	GAGTC	2 cut(s)	117, 248
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	7 cut(s)	46, 52, 211, 284, 327, 375, 409
SfcI	CTRYAG	2 cut(s)	283, 368
Sse9I	AATT	4 cut(s)	189, 203, 301, 384
SspMI	CTAG	2 cut(s)	47, 51
SstI	GAGCTC	1 cut(s)	409
StyI	CCWWGG	2 cut(s)	40, 225
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	170
TasI	AATT	4 cut(s)	189, 203, 301, 384
TatI	WGTACW	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TseI	GCWGC	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	61, 396
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	2 cut(s)	47, 51
ZrmI	AGTACT	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.