Rh6DG276300

Desumoylating isopeptidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0008469
Physical Location & Seq
Forward (+)
47010609 .. 47013492
2884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG276300.1

Sequence Viewer

Length: 588 bp
ATGCATTATTACTATCTATCTGAGTGTTATTTACTTACTTTCCTTGCCCAGATATACTTACGGGGGTGCATTGCAGTTTCTGAACTGATGCGTTTGAACTTTGTGCAGGAGGGTCATAGGGTTACTTTGAATGTATATGATCTAAGCCAAGGTCTAGCTAGACAGATGTCTATGGCATTCATAGGGAAGGCCATTGAGGGCATATGGCATACAGGAGTCTCAGTTTACGGTAACGAGTACTATTTTGGGGGAGGCATACAACACGCTCCTGCTGGATCGACACCATATGGGACACCAATTCGGGTGGTAGAATTAGGTGAAACACATGTCCCCAAGGATGTTTTTGAGTCGTATTTACAGGAGATCAGTCCCCGATATACTGCTGAGACCTATAGTCTTCTAACTCACAATTGCAATAACTTTAGCAATGAGGTTGCTCAGTTTTTGGTTGGTGCAACCATACCCGACTATATTCTGCAGCTTCCTAATGAAGTTATGGGCAGTCCAATGGGAGCTCTTATATGTAAGTTTTTTGATAGCCGGTCTAAGATTTATTGTGTCTTTCTTGTGGAGTTCCTTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

195

Amino Acids

22.06

Weight (kDa)

5.44

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 39 - 174 1.7e-48 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 283
AfaI GTAC 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 2 cut(s) 97, 130
AhdI GACNNNNNGTC 1 cut(s) 393
AluBI AGCT 3 cut(s) 158, 481, 515
AluI AGCT 3 cut(s) 158, 481, 515
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 223, 380
AlwI GGATC 1 cut(s) 283
AlwNI CAGNNNCTG 1 cut(s) 80
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 478
AsuHPI GGTGA 1 cut(s) 329
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 1 cut(s) 490
BcoDI GTCTC 2 cut(s) 223, 380
BfaI CTAG 2 cut(s) 155, 159
BfmI CTRYAG 2 cut(s) 391, 476
BisI GCNGC 1 cut(s) 479
BlsI GCNGC 1 cut(s) 480
BmcAI AGTACT 1 cut(s) 239
BmeRI GACNNNNNGTC 1 cut(s) 393
BmsI GCATC 1 cut(s) 78
BoxI GACNNNNGTC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 148, 333
BsaXI ACNNNNNCTCC 2 cut(s) 207, 237
Bse118I RCCGGY 1 cut(s) 540
Bse3DI GCAATG 2 cut(s) 69, 433
BseDI CCNNGG 2 cut(s) 148, 333
BseGI GGATG 1 cut(s) 343
BseMI GCAATG 2 cut(s) 69, 433
BseMII CTCAG 4 cut(s) 12, 234, 375, 452
BseXI GCAGC 1 cut(s) 490
BsgI GTGCAG 1 cut(s) 125
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 541
BslFI GGGAC 3 cut(s) 304, 314, 354
BsmAI GTCTC 2 cut(s) 223, 380
BsmFI GGGAC 3 cut(s) 304, 314, 354
BsmI GAATGC 1 cut(s) 176
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 3 cut(s) 139, 275, 363
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 4 cut(s) 13, 233, 376, 451
BspMAI CTGCAG 1 cut(s) 480
BspPI GGATC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 380
BsrDI GCAATG 2 cut(s) 69, 433
BsrFI RCCGGY 1 cut(s) 540
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 2 cut(s) 148, 333
BssMI GATC 3 cut(s) 139, 275, 363
BssT1I CCWWGG 2 cut(s) 148, 333
Bst4CI ACNGT 1 cut(s) 230
BstDEI CTNAG 6 cut(s) 21, 143, 220, 384, 438, 546
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 3 cut(s) 142, 278, 366
BstMAI GTCTC 2 cut(s) 223, 380
BstMBI GATC 3 cut(s) 139, 275, 363
BstNSI RCATGY 1 cut(s) 329
BstPAI GACNNNNGTC 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 391, 476
BstV1I GCAGC 1 cut(s) 490
BstV2I GAAGAC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 191
BtsCI GGATG 1 cut(s) 343
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 540
Csp6I GTAC 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 1 cut(s) 326
CviJI RGCY 6 cut(s) 147, 158, 191, 481, 515, 540
CviKI_1 RGCY 6 cut(s) 147, 158, 191, 481, 515, 540
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 6 cut(s) 21, 143, 220, 384, 438, 546
DpnI GATC 3 cut(s) 141, 277, 365
DpnII GATC 3 cut(s) 139, 275, 363
DriI GACNNNNNGTC 1 cut(s) 393
Eam1105I GACNNNNNGTC 1 cut(s) 393
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 2 cut(s) 148, 333
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 515
EcoT14I CCWWGG 2 cut(s) 148, 333
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 2 cut(s) 148, 333
FaeI CATG 1 cut(s) 329
FaqI GGGAC 3 cut(s) 304, 314, 354
FatI CATG 1 cut(s) 325
FauNDI CATATG 2 cut(s) 203, 286
Fnu4HI GCNGC 1 cut(s) 479
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 1 cut(s) 479
FspBI CTAG 2 cut(s) 155, 159
GluI GCNGC 1 cut(s) 479
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 541
Hin1II CATG 1 cut(s) 329
HinfI GANTC 2 cut(s) 216, 347
HpaII CCGG 1 cut(s) 541
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 22, 82
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 7 cut(s) 4, 69, 74, 106, 414, 455, 478
HpyF3I CTNAG 6 cut(s) 21, 143, 220, 384, 438, 546
Hsp92II CATG 1 cut(s) 329
Kzo9I GATC 3 cut(s) 139, 275, 363
LmnI GCTCC 2 cut(s) 271, 512
LpnPI CCDG 7 cut(s) 62, 92, 198, 258, 282, 344, 554
Lsp1109I GCAGC 1 cut(s) 490
LweI GCATC 1 cut(s) 78
MaeI CTAG 2 cut(s) 155, 159
MaeIII GTNAC 2 cut(s) 121, 230
MalI GATC 3 cut(s) 141, 277, 365
MboI GATC 3 cut(s) 139, 275, 363
MboII GAAGA 1 cut(s) 389
MfeI CAATTG 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 3 cut(s) 297, 311, 409
MlyI GAGTC 2 cut(s) 225, 356
MnlI CCTC 4 cut(s) 103, 190, 245, 424
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 586
MspI CCGG 1 cut(s) 541
MunI CAATTG 1 cut(s) 409
Mva1269I GAATGC 1 cut(s) 176
NdeI CATATG 2 cut(s) 203, 286
NdeII GATC 3 cut(s) 139, 275, 363
NlaIII CATG 1 cut(s) 329
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 329
PciI ACATGT 1 cut(s) 325
PctI GAATGC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 480
PleI GAGTC 2 cut(s) 224, 355
PpsI GAGTC 2 cut(s) 224, 355
PscI ACATGT 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 517
PstI CTGCAG 1 cut(s) 480
PstNI CAGNNNCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 517
SaqAI TTAA 1 cut(s) 586
SatI GCNGC 1 cut(s) 479
Sau3AI GATC 3 cut(s) 139, 275, 363
ScaI AGTACT 1 cut(s) 239
SchI GAGTC 2 cut(s) 225, 356
SduI GDGCHC 1 cut(s) 517
SetI ASST 7 cut(s) 154, 160, 319, 392, 435, 483, 517
SfaNI GCATC 1 cut(s) 78
SfcI CTRYAG 2 cut(s) 391, 476
Sse9I AATT 3 cut(s) 297, 311, 409
SspMI CTAG 2 cut(s) 155, 159
SstI GAGCTC 1 cut(s) 517
StyI CCWWGG 2 cut(s) 148, 333
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 278
TasI AATT 3 cut(s) 297, 311, 409
TatI WGTACW 1 cut(s) 237
Tru1I TTAA 1 cut(s) 586
Tru9I TTAA 1 cut(s) 586
TseI GCWGC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 169, 504
XceI RCATGY 1 cut(s) 329
XspI CTAG 2 cut(s) 155, 159
ZrmI AGTACT 1 cut(s) 239
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.