AT3G07390

Protein of unknown function (DUF568)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013370
Physical Location & Seq
Forward (+)
2365301 .. 2366496
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07390.1

Sequence Viewer

Length: 822 bp
ATGTCCCTGTGTCTTAAAATACCTCTTATCAAACACCAAACCACACCAGAACAGAACTCAGCCATGGCTTCTTCTTCTTCTTCTCTTCTAATCCTAGCCGTTGCTTGTTTCGTCTCGCTAATCTCACCGGCGATTTCACAACAGGCTTGCAAATCACAGAACTTGAACTCCGCCGGTCCGTTCGATAGTTGCGAAGACCTTCCGGTACTCAATTCCTACCTCCATTACACCTACAATTCCTCAAATTCATCTCTCTCCGTCGCTTTCGTCGCCACTCCATCTCAAGCCAACGGTGGCTGGGTCGCTTGGGCTATTAACCCTACGGGGACTAAGATGGCTGGTTCTCAAGCCTTCCTCGCTTACAGATCCGGCGGTGGTGCGGCTCCGGTCGTGAAGACGTACAACATTAGCAGCTACAGCAGTCTCGTCGAAGGTAAACTTGCTTTTGATTTTTGGAATCTACGCGCCGAGTCGTTAAGCGGCGGTAGGATCGCCATTTTCACGACGGTTAAGGTTCCGGCGGGAGCTGATAGTGTGAATCAGGTATGGCAGATCGGCGGCAATGTTACCAACGGTCGTCCCGGTGTACATCCTTTCGGTCCTGATAATTTGGGCTCCCACCGTGTGTTGAGTTTCACAGAAGATGCAGCACCGGGCTCTGCTCCTTCGCCGGGATCTGCTCCGGCGCCGGGCACCAGTGGCTCGACTACCCCAGGAACAGCGGCGGGAGGTCCAGGGAACGCGGGGTCATTGACGAGGAACGTAAATTTTGGGGTCAATTTGGGAATTTTGGTTTTGTTGGGTTCTATTTTTATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

273

Amino Acids

27.93

Weight (kDa)

8.37

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 112 - 212 2.2e-25 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 685, 692
AccII CGCG 2 cut(s) 465, 743
AclWI GGATC 3 cut(s) 360, 497, 682
AcsI RAATTY 3 cut(s) 244, 766, 786
AcyI GRCGYC 1 cut(s) 686
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 3 cut(s) 207, 401, 588
AfiI CCNNNNNNNGG 2 cut(s) 671, 689
AgsI TTSAA 1 cut(s) 166
AjnI CCWGG 2 cut(s) 712, 733
AloI GAACNNNNNNTCC 2 cut(s) 152, 184
AluBI AGCT 2 cut(s) 414, 527
AluI AGCT 2 cut(s) 414, 527
Alw26I GTCTC 2 cut(s) 118, 428
AlwI GGATC 3 cut(s) 360, 497, 682
ApeKI GCWGC 2 cut(s) 411, 647
ApoI RAATTY 3 cut(s) 244, 766, 786
Asp700I GAANNNNTTC 1 cut(s) 198
AspLEI GCGC 2 cut(s) 467, 688
AspS9I GGNCC 3 cut(s) 176, 599, 731
AsuC2I CCSGG 4 cut(s) 582, 654, 672, 690
AsuHPI GGTGA 1 cut(s) 117
AvaII GGWCC 3 cut(s) 176, 599, 731
BaeGI GKGCMC 1 cut(s) 695
BanI GGYRCC 2 cut(s) 685, 692
BanII GRGCYC 2 cut(s) 617, 659
BbsI GAAGAC 2 cut(s) 201, 401
BbvI GCAGC 2 cut(s) 423, 659
BccI CCATC 2 cut(s) 286, 328
BceAI ACGGC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 2 cut(s) 714, 735
BcnI CCSGG 4 cut(s) 582, 654, 672, 690
BcoDI GTCTC 2 cut(s) 118, 428
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 415
BfoI RGCGCY 1 cut(s) 689
BisI GCNGC 6 cut(s) 381, 412, 481, 559, 648, 723
BlsI GCNGC 6 cut(s) 382, 413, 482, 560, 649, 724
Bme1390I CCNGG 6 cut(s) 582, 654, 672, 690, 714, 735
Bme18I GGWCC 3 cut(s) 176, 599, 731
BmgT120I GGNCC 3 cut(s) 176, 599, 731
BmiI GGNNCC 5 cut(s) 384, 516, 616, 687, 694
BmrFI CCNGG 6 cut(s) 582, 654, 672, 690, 714, 735
BmsI GCATC 1 cut(s) 634
BpiI GAAGAC 2 cut(s) 201, 401
BpuEI CTTGAG 2 cut(s) 267, 330
BpuMI CCSGG 4 cut(s) 582, 654, 672, 690
BsaHI GRCGYC 1 cut(s) 686
BsaJI CCNNGG 3 cut(s) 63, 712, 734
BsaWI WCCGGW 2 cut(s) 202, 385
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
Bsc4I CCNNNNNNNGG 2 cut(s) 671, 689
Bse118I RCCGGY 2 cut(s) 127, 173
Bse1I ACTGG 1 cut(s) 696
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 2 cut(s) 714, 735
BseDI CCNNGG 3 cut(s) 63, 712, 734
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 2 cut(s) 671, 689
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 695
BseXI GCAGC 2 cut(s) 423, 659
BseYI CCCAGC 1 cut(s) 297
Bsh1236I CGCG 2 cut(s) 465, 743
Bsh1285I CGRYCG 2 cut(s) 390, 577
BshNI GGYRCC 2 cut(s) 685, 692
BsiEI CGRYCG 2 cut(s) 390, 577
BslFI GGGAC 2 cut(s) 340, 564
BslI CCNNNNNNNGG 2 cut(s) 671, 689
BsmAI GTCTC 2 cut(s) 118, 428
BsmBI CGTCTC 1 cut(s) 118
BsmFI GGGAC 2 cut(s) 340, 564
Bsp1286I GDGCHC 3 cut(s) 617, 659, 695
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 4 cut(s) 365, 489, 552, 674
Bsp19I CCATGG 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 2 cut(s) 465, 743
BspLI GGNNCC 5 cut(s) 384, 516, 616, 687, 694
BspPI GGATC 3 cut(s) 360, 497, 682
BspT107I GGYRCC 2 cut(s) 685, 692
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 2 cut(s) 127, 173
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 1 cut(s) 696
BssAI RCCGGY 2 cut(s) 127, 173
BssECI CCNNGG 3 cut(s) 63, 712, 734
BssMI GATC 4 cut(s) 365, 489, 552, 674
BssNI GRCGYC 1 cut(s) 686
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 2 cut(s) 714, 735
Bst4CI ACNGT 4 cut(s) 293, 508, 575, 623
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 686
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 58, 330
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 2 cut(s) 465, 743
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 2 cut(s) 467, 688
BstKTI GATC 4 cut(s) 368, 492, 555, 677
BstMAI GTCTC 2 cut(s) 118, 428
BstMBI GATC 4 cut(s) 365, 489, 552, 674
BstMCI CGRYCG 2 cut(s) 390, 577
BstMWI GCNNNNNNNGC 4 cut(s) 269, 356, 417, 699
BstNI CCWGG 2 cut(s) 714, 735
BstSCI CCNGG 6 cut(s) 580, 652, 670, 688, 712, 733
BstSFI CTRYAG 1 cut(s) 415
BstSLI GKGCMC 1 cut(s) 695
BstUI CGCG 2 cut(s) 465, 743
BstV1I GCAGC 2 cut(s) 423, 659
BstV2I GAAGAC 2 cut(s) 201, 401
BstX2I RGATCY 2 cut(s) 365, 674
BstYI RGATCY 2 cut(s) 365, 674
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 1 cut(s) 148
CfoI GCGC 2 cut(s) 467, 688
Cfr10I RCCGGY 2 cut(s) 127, 173
Cfr13I GGNCC 3 cut(s) 176, 599, 731
CpoI CGGWCCG 1 cut(s) 176
Csp6I GTAC 3 cut(s) 206, 400, 587
CspI CGGWCCG 1 cut(s) 176
CviAII CATG 1 cut(s) 64
CviQI GTAC 3 cut(s) 206, 400, 587
DdeI CTNAG 2 cut(s) 58, 330
DinI GGCGCC 1 cut(s) 687
DpnI GATC 4 cut(s) 367, 491, 554, 676
DpnII GATC 4 cut(s) 365, 489, 552, 674
DraIII CACNNNGTG 1 cut(s) 625
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 2 cut(s) 617, 659
Eco47I GGWCC 3 cut(s) 176, 599, 731
EcoRII CCWGG 2 cut(s) 712, 733
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 2 cut(s) 617, 659
EgeI GGCGCC 1 cut(s) 687
EheI GGCGCC 1 cut(s) 687
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 118
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 547
FalI AAGNNNNNCTT 2 cut(s) 423, 455
FaqI GGGAC 2 cut(s) 340, 564
FatI CATG 1 cut(s) 63
FauI CCCGC 3 cut(s) 514, 718, 736
Fnu4HI GCNGC 6 cut(s) 381, 412, 481, 559, 648, 723
FokI GGATG 1 cut(s) 576
FriOI GRGCYC 2 cut(s) 617, 659
Fsp4HI GCNGC 6 cut(s) 381, 412, 481, 559, 648, 723
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 466, 687
GluI GCNGC 6 cut(s) 381, 412, 481, 559, 648, 723
GsaI CCCAGC 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 689
HhaI GCGC 2 cut(s) 467, 688
Hin1I GRCGYC 1 cut(s) 686
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 2 cut(s) 465, 686
HinP1I GCGC 2 cut(s) 465, 686
HinfI GANTC 3 cut(s) 457, 470, 538
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 2 cut(s) 437, 587
Hpy188I TCNGA 1 cut(s) 821
Hpy188III TCNNGA 3 cut(s) 391, 502, 602
Hpy8I GTNNAC 2 cut(s) 437, 587
Hpy99I CGWCG 4 cut(s) 263, 272, 431, 508
HpyAV CCTTC 4 cut(s) 209, 361, 425, 675
HpyCH4III ACNGT 4 cut(s) 293, 508, 575, 623
HpyCH4IV ACGT 2 cut(s) 398, 762
HpyCH4V TGCA 2 cut(s) 150, 647
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 356, 417, 699
HpyF3I CTNAG 2 cut(s) 58, 330
HpySE526I ACGT 2 cut(s) 398, 762
Hsp92I GRCGYC 1 cut(s) 686
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 2 cut(s) 465, 686
KasI GGCGCC 1 cut(s) 685
Kzo9I GATC 4 cut(s) 365, 489, 552, 674
LmnI GCTCC 5 cut(s) 388, 524, 620, 667, 685
Lsp1109I GCAGC 2 cut(s) 423, 659
LweI GCATC 1 cut(s) 634
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 398, 762
MaeIII GTNAC 1 cut(s) 565
MalI GATC 4 cut(s) 367, 491, 554, 676
MboI GATC 4 cut(s) 365, 489, 552, 674
MboII GAAGA 8 cut(s) 63, 66, 69, 72, 77, 206, 406, 653
MflI RGATCY 2 cut(s) 365, 674
MhlI GDGCHC 3 cut(s) 617, 659, 695
MluCI AATT 7 cut(s) 211, 235, 244, 607, 766, 778, 786
Mly113I GGCGCC 1 cut(s) 686
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 6 cut(s) 33, 230, 250, 365, 722, 750
MroXI GAANNNNTTC 1 cut(s) 198
MseI TTAA 4 cut(s) 15, 315, 476, 510
MspA1I CMGCKG 1 cut(s) 722
MspR9I CCNGG 6 cut(s) 582, 654, 672, 690, 714, 735
MvaI CCWGG 2 cut(s) 714, 735
MvnI CGCG 2 cut(s) 465, 743
MwoI GCNNNNNNNGC 4 cut(s) 269, 356, 417, 699
NarI GGCGCC 1 cut(s) 686
NciI CCSGG 4 cut(s) 582, 654, 672, 690
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 365, 489, 552, 674
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 5 cut(s) 384, 516, 616, 687, 694
NmeAIII GCCGAG 1 cut(s) 493
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 198
PfeI GAWTC 2 cut(s) 457, 538
PkrI GCNGC 6 cut(s) 382, 413, 482, 560, 649, 724
PleI GAGTC 1 cut(s) 478
PluTI GGCGCC 1 cut(s) 689
PpsI GAGTC 1 cut(s) 478
Psp6I CCWGG 2 cut(s) 712, 733
PspFI CCCAGC 1 cut(s) 297
PspGI CCWGG 2 cut(s) 712, 733
PspN4I GGNNCC 5 cut(s) 384, 516, 616, 687, 694
PspPI GGNCC 3 cut(s) 176, 599, 731
PsuI RGATCY 2 cut(s) 365, 674
RsaI GTAC 3 cut(s) 207, 401, 588
RsaNI GTAC 3 cut(s) 206, 400, 587
Rsr2I CGGWCCG 1 cut(s) 176
RsrII CGGWCCG 1 cut(s) 176
SaqAI TTAA 4 cut(s) 15, 315, 476, 510
SatI GCNGC 6 cut(s) 381, 412, 481, 559, 648, 723
Sau3AI GATC 4 cut(s) 365, 489, 552, 674
Sau96I GGNCC 3 cut(s) 176, 599, 731
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 6 cut(s) 582, 654, 672, 690, 714, 735
SduI GDGCHC 3 cut(s) 617, 659, 695
SfaNI GCATC 1 cut(s) 634
SfcI CTRYAG 1 cut(s) 415
SfoI GGCGCC 1 cut(s) 687
SgrAI CRCCGGYG 1 cut(s) 127
SinI GGWCC 3 cut(s) 176, 599, 731
SmlI CTYRAG 2 cut(s) 282, 345
SmoI CTYRAG 2 cut(s) 282, 345
Sse9I AATT 7 cut(s) 211, 235, 244, 607, 766, 778, 786
SspDI GGCGCC 1 cut(s) 685
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 6 cut(s) 580, 652, 670, 688, 712, 733
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 293, 508, 575, 623
TaiI ACGT 2 cut(s) 401, 765
TaqI TCGA 3 cut(s) 183, 429, 704
TaqII GACCGA 1 cut(s) 587
TasI AATT 7 cut(s) 211, 235, 244, 607, 766, 778, 786
TatI WGTACW 1 cut(s) 586
TauI GCSGC 4 cut(s) 383, 483, 561, 725
TfiI GAWTC 2 cut(s) 457, 538
Tru1I TTAA 4 cut(s) 15, 315, 476, 510
Tru9I TTAA 4 cut(s) 15, 315, 476, 510
TscAI CASTG 1 cut(s) 703
TseI GCWGC 2 cut(s) 411, 647
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 2 cut(s) 168, 247
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 3 cut(s) 176, 599, 731
XapI RAATTY 3 cut(s) 244, 766, 786
XmnI GAANNNNTTC 1 cut(s) 198
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.