FvH4_2g18001

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013370
Physical Location & Seq
Reverse (-)
15427798 .. 15428616
819 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18001.t1

Sequence Viewer

Length: 819 bp
ATGGATATAAATAACCCTACTTGCTTAAAGCTTCCCTTCCATTTAGCAAAGCAAGCACTACTCACTCTCACTCTCTCCCCAATGGCTTCCTTCTCTCCCCTCCTCCTCTTCCTCCTGGTCTCCCTCTCGGCTCTTCTAATCTCCCCCTCTCAGGCAGCCACCGCCTGCCCCTCCACCAAGTTCAAGAACAACAAGGTCTTCGCCAACTGCACCGTCCTCTCCGCCCTCGACTCCCACCTCTACTACTCCTACAACGCCTCCAACTCCTCCCTCGCCGTCGCCTTCGTCGCCGCCCCTTCCAAGCCCGGCGGCTGGATCGCCTGGGCCATCAACCCCACCGGCACCAAAATGTCCGGCGCTCAAGCCATCGTCGCCTACACCAAAGAAGACGGCATCCCGGCCATCAAAACCCTCAACATCACCTCTTACAACATCCTCACTCCCGGAAAGCTCGCCTTCGACTTCTGGGACACCAGCGCCGAGCTCGCCAGCGGAACCCTAACGATCTTCGCTACCGTCAAGGTTCCCGAGAAGGCGGAGACTGTGAACCAGGTCTGGCAAGTCGGCCCCGGAATCAACAAAACCACAGGCTATCTCGAGAAGCACGAGTTTGGGTCTCAAAACCTCGTCGCGTACGGTCCATTGAGCTTGGTAGCCACCGGGACAAGCAGCACTACCACCACCACAAACACCACTAGTGGCAGCGCCACTAACACCACGAGTGGTCAGAGTGGAGCGCCGTTGAGGATTGGGGATGGAGGACACGTGGGTTTGTTGTCTATTTTGCTTTTGGTCCTTGGGGCTCTTATTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

273

Amino Acids

28.4

Weight (kDa)

8.71

Isoelectric Point (pI)

32.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 117 - 216 5.4e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 341
AccII CGCG 1 cut(s) 632
AciI CCGC 6 cut(s) 162, 222, 291, 309, 492, 536
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 399
AcvI CACGTG 1 cut(s) 766
AfaI GTAC 1 cut(s) 635
AfiI CCNNNNNNNGG 2 cut(s) 151, 312
AflIII ACRYGT 1 cut(s) 763
AgsI TTSAA 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 695
AjnI CCWGG 3 cut(s) 114, 320, 549
AluBI AGCT 4 cut(s) 31, 451, 484, 648
AluI AGCT 4 cut(s) 31, 451, 484, 648
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 3 cut(s) 124, 533, 621
AlwI GGATC 1 cut(s) 323
Ama87I CYCGRG 2 cut(s) 527, 596
AoxI GGCC 3 cut(s) 324, 399, 565
ApeKI GCWGC 3 cut(s) 155, 669, 702
AspLEI GCGC 4 cut(s) 359, 479, 707, 739
AspS9I GGNCC 4 cut(s) 324, 566, 638, 793
AsuC2I CCSGG 5 cut(s) 306, 398, 444, 570, 661
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 2 cut(s) 527, 596
AvaII GGWCC 2 cut(s) 638, 793
BanI GGYRCC 1 cut(s) 341
BanII GRGCYC 2 cut(s) 486, 805
BauI CACGAG 2 cut(s) 605, 718
BbrPI CACGTG 1 cut(s) 766
BbsI GAAGAC 2 cut(s) 190, 393
Bbv12I GWGCWC 1 cut(s) 486
BbvI GCAGC 3 cut(s) 167, 681, 714
BccI CCATC 4 cut(s) 335, 374, 410, 749
BceAI ACGGC 3 cut(s) 260, 406, 724
BciT130I CCWGG 3 cut(s) 116, 322, 551
BcnI CCSGG 5 cut(s) 306, 398, 444, 570, 661
BcoDI GTCTC 3 cut(s) 124, 533, 621
BcuI ACTAGT 1 cut(s) 695
BfaI CTAG 2 cut(s) 696, 817
BfoI RGCGCY 4 cut(s) 360, 480, 708, 740
BisI GCNGC 5 cut(s) 156, 291, 310, 670, 703
BlsI GCNGC 5 cut(s) 157, 292, 311, 671, 704
Bme1390I CCNGG 8 cut(s) 116, 306, 322, 398, 444, 551, 570, 661
Bme18I GGWCC 2 cut(s) 638, 793
BmeT110I CYCGRG 2 cut(s) 527, 596
BmgT120I GGNCC 4 cut(s) 324, 566, 638, 793
BmiI GGNNCC 4 cut(s) 343, 496, 525, 568
BmrFI CCNGG 8 cut(s) 116, 306, 322, 398, 444, 551, 570, 661
BmsI GCATC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 190, 393
BpuEI CTTGAG 1 cut(s) 345
BpuMI CCSGG 5 cut(s) 306, 398, 444, 570, 661
BsaAI YACGTR 1 cut(s) 766
BsaI GGTCTC 2 cut(s) 124, 621
BsaJI CCNNGG 3 cut(s) 321, 568, 796
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 750, 780
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 312
Bse118I RCCGGY 1 cut(s) 338
BseBI CCWGG 3 cut(s) 116, 322, 551
BseDI CCNNGG 3 cut(s) 321, 568, 796
BseGI GGATG 3 cut(s) 393, 432, 760
BseLI CCNNNNNNNGG 2 cut(s) 151, 312
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 3 cut(s) 92, 95, 256
BseXI GCAGC 3 cut(s) 167, 681, 714
BsgI GTGCAG 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 632
BshFI GGCC 3 cut(s) 326, 401, 567
BshNI GGYRCC 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 486
BsiHKCI CYCGRG 2 cut(s) 527, 596
BsiSI CCGG 7 cut(s) 306, 339, 354, 398, 444, 570, 660
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 2 cut(s) 482, 676
BslI CCNNNNNNNGG 2 cut(s) 151, 312
BsmAI GTCTC 3 cut(s) 124, 533, 621
BsmFI GGGAC 2 cut(s) 482, 676
BsnI GGCC 3 cut(s) 326, 401, 567
Bso31I GGTCTC 2 cut(s) 124, 621
BsoBI CYCGRG 2 cut(s) 527, 596
Bsp1286I GDGCHC 2 cut(s) 486, 805
Bsp143I GATC 2 cut(s) 315, 504
BspACI CCGC 6 cut(s) 162, 222, 291, 309, 492, 536
BspANI GGCC 3 cut(s) 326, 401, 567
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 1 cut(s) 632
BspLI GGNNCC 4 cut(s) 343, 496, 525, 568
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 341
BspTNI GGTCTC 2 cut(s) 124, 621
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 321, 568, 796
BssMI GATC 2 cut(s) 315, 504
BssSI CACGAG 2 cut(s) 605, 718
BssT1I CCWWGG 1 cut(s) 796
Bst2BI CACGAG 2 cut(s) 605, 718
Bst2UI CCWGG 3 cut(s) 116, 322, 551
Bst4CI ACNGT 4 cut(s) 214, 517, 544, 638
Bst6I CTCTTC 2 cut(s) 113, 138
BstBAI YACGTR 1 cut(s) 766
BstC8I GCNNGC 5 cut(s) 54, 166, 453, 486, 490
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 3 cut(s) 393, 432, 760
BstFNI CGCG 1 cut(s) 632
BstH2I RGCGCY 4 cut(s) 360, 480, 708, 740
BstHHI GCGC 4 cut(s) 359, 479, 707, 739
BstKTI GATC 2 cut(s) 318, 507
BstMAI GTCTC 3 cut(s) 124, 533, 621
BstMBI GATC 2 cut(s) 315, 504
BstMWI GCNNNNNNNGC 5 cut(s) 53, 161, 287, 371, 485
BstNI CCWGG 3 cut(s) 116, 322, 551
BstSCI CCNGG 8 cut(s) 114, 304, 320, 396, 442, 549, 568, 659
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 3 cut(s) 167, 681, 714
BstV2I GAAGAC 2 cut(s) 190, 393
BsuRI GGCC 3 cut(s) 326, 401, 567
BtsCI GGATG 3 cut(s) 393, 432, 760
Cac8I GCNNGC 5 cut(s) 54, 166, 453, 486, 490
CfoI GCGC 4 cut(s) 359, 479, 707, 739
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 4 cut(s) 324, 566, 638, 793
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 1 cut(s) 634
CviQI GTAC 1 cut(s) 634
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 317, 506
DpnII GATC 2 cut(s) 315, 504
EaeI YGGCCR 1 cut(s) 399
Eam1104I CTCTTC 2 cut(s) 113, 138
EarI CTCTTC 2 cut(s) 113, 138
EciI GGCGGA 2 cut(s) 211, 551
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 796
Eco24I GRGCYC 2 cut(s) 486, 805
Eco31I GGTCTC 2 cut(s) 124, 621
Eco47I GGWCC 2 cut(s) 638, 793
Eco53kI GAGCTC 1 cut(s) 484
Eco72I CACGTG 1 cut(s) 766
Eco88I CYCGRG 2 cut(s) 527, 596
EcoICRI GAGCTC 1 cut(s) 484
EcoRII CCWGG 3 cut(s) 114, 320, 549
EcoT14I CCWWGG 1 cut(s) 796
EcoT38I GRGCYC 2 cut(s) 486, 805
ErhI CCWWGG 1 cut(s) 796
FaiI YATR 1 cut(s) 8
FalI AAGNNNNNCTT 4 cut(s) 20, 52, 440, 472
FaqI GGGAC 2 cut(s) 482, 676
Fnu4HI GCNGC 5 cut(s) 156, 291, 310, 670, 703
FokI GGATG 3 cut(s) 380, 419, 767
FriOI GRGCYC 2 cut(s) 486, 805
Fsp4HI GCNGC 5 cut(s) 156, 291, 310, 670, 703
FspBI CTAG 2 cut(s) 696, 817
GlaI GCGC 4 cut(s) 358, 478, 706, 738
GluI GCNGC 5 cut(s) 156, 291, 310, 670, 703
HaeII RGCGCY 4 cut(s) 360, 480, 708, 740
HaeIII GGCC 3 cut(s) 326, 401, 567
HapII CCGG 7 cut(s) 306, 339, 354, 398, 444, 570, 660
HhaI GCGC 4 cut(s) 359, 479, 707, 739
Hin6I GCGC 4 cut(s) 357, 477, 705, 737
HinP1I GCGC 4 cut(s) 357, 477, 705, 737
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 2 cut(s) 230, 573
HpaII CCGG 7 cut(s) 306, 339, 354, 398, 444, 570, 660
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 547
Hpy188I TCNGA 1 cut(s) 729
Hpy188III TCNNGA 4 cut(s) 184, 527, 596, 598
Hpy8I GTNNAC 1 cut(s) 547
Hpy99I CGWCG 4 cut(s) 281, 290, 374, 632
HpyAV CCTTC 6 cut(s) 46, 100, 292, 306, 466, 526
HpyCH4III ACNGT 4 cut(s) 214, 517, 544, 638
HpyCH4IV ACGT 1 cut(s) 765
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 161, 287, 371, 485
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 765
HspAI GCGC 4 cut(s) 357, 477, 705, 737
Kzo9I GATC 2 cut(s) 315, 504
LguI GCTCTTC 1 cut(s) 138
LmnI GCTCC 1 cut(s) 734
Lsp1109I GCAGC 3 cut(s) 167, 681, 714
LweI GCATC 1 cut(s) 402
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 2 cut(s) 696, 817
MaeII ACGT 1 cut(s) 765
MalI GATC 2 cut(s) 317, 506
MboI GATC 2 cut(s) 315, 504
MboII GAAGA 5 cut(s) 100, 125, 190, 398, 499
MhlI GDGCHC 2 cut(s) 486, 805
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 285
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 7 cut(s) 306, 339, 354, 398, 444, 570, 660
MspR9I CCNGG 8 cut(s) 116, 306, 322, 398, 444, 551, 570, 661
MvaI CCWGG 3 cut(s) 116, 322, 551
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 5 cut(s) 53, 161, 287, 371, 485
NciI CCSGG 5 cut(s) 306, 398, 444, 570, 661
NdeII GATC 2 cut(s) 315, 504
NlaIV GGNNCC 4 cut(s) 343, 496, 525, 568
NmeAIII GCCGAG 2 cut(s) 107, 505
PaeR7I CTCGAG 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 603
PfeI GAWTC 1 cut(s) 573
Pfl23II CGTACG 1 cut(s) 633
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 5 cut(s) 157, 292, 311, 671, 704
PleI GAGTC 1 cut(s) 224
PmaCI CACGTG 1 cut(s) 766
PmlI CACGTG 1 cut(s) 766
PpsI GAGTC 1 cut(s) 224
Ppu21I YACGTR 1 cut(s) 766
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 3 cut(s) 114, 320, 549
PspCI CACGTG 1 cut(s) 766
PspGI CCWGG 3 cut(s) 114, 320, 549
PspLI CGTACG 1 cut(s) 633
PspN4I GGNNCC 4 cut(s) 343, 496, 525, 568
PspPI GGNCC 4 cut(s) 324, 566, 638, 793
RsaI GTAC 1 cut(s) 635
RsaNI GTAC 1 cut(s) 634
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 138
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 5 cut(s) 156, 291, 310, 670, 703
Sau3AI GATC 2 cut(s) 315, 504
Sau96I GGNCC 4 cut(s) 324, 566, 638, 793
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 8 cut(s) 116, 306, 322, 398, 444, 551, 570, 661
SduI GDGCHC 2 cut(s) 486, 805
SexAI ACCWGGT 1 cut(s) 549
SfaNI GCATC 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 596
SinI GGWCC 2 cut(s) 638, 793
SlaI CTCGAG 1 cut(s) 596
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 2 cut(s) 360, 596
SmoI CTYRAG 2 cut(s) 360, 596
SpeI ACTAGT 1 cut(s) 695
SsiI CCGC 6 cut(s) 162, 222, 291, 309, 492, 536
SspMI CTAG 2 cut(s) 696, 817
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 8 cut(s) 114, 304, 320, 396, 442, 549, 568, 659
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 4 cut(s) 214, 517, 544, 638
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 228, 459, 597
TauI GCSGC 2 cut(s) 293, 312
TfiI GAWTC 1 cut(s) 573
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseI GCWGC 3 cut(s) 155, 669, 702
VpaK11BI GGWCC 2 cut(s) 638, 793
XhoI CTCGAG 1 cut(s) 596
XspI CTAG 2 cut(s) 696, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.