Rw6G023020

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013370
Physical Location & Seq
Reverse (-)
45215580 .. 45216812
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023020.1

Sequence Viewer

Length: 825 bp
ATGGATATAAATAACCCTACTGAATACTCCTTTACATTAATTTTATGGTCACTGAGCAAAGCAAACACTAATTTCTCACTCGCTCTGTCTCCAATGGCTTCCTTCTCTCCCTTCCTCCTGATCTCCCTCTCGGCTCTGCTAATCTTACCCTCTCAGTCAGCCGACTGCCCCTCCGCCAAGTTCAAGAACAACAAGTCCTTCAGCAACTGCACCGCCCTCTCCTCCCTCAGCTCCTACCTCCACTATACCTACAACCCCTCCAACTCCTCCCTCGCCGTCGCCTTCATCGCCAAACCTCCCAAGTCCGGCGGCTGGATCGCCTGGGCCATCAACCCCAACAGCACCAAAATGCCCGGCGCTCAAGCCATAGTCGCCTACACCAAAGAAGACGGCACCCCCATGATCAAAACCCTCAACATCAAATCCTACACCGAACTGCTTCCCGGAAAGCTGGCCTTCGACGTCTGGGACACCAGCGCCGAGCTCACCAGCGGAACCTTAACGCTCTTCGCCACCGTCAAGGTTCCGGAGAAGGCAGAGACGCTGAACCAGGTCTGGCAGGTGGGCCCTGGAGTCAACCAGTCCACCGGCTATATCATGAAGCACGACTTCGGCAAGGAAAATCTCGCCGCGTACGGTCTCTTGAGATTGGCCGGCACCGCTAGTACCAACACCACAAACACCACTAGTACCAACACCACAAACACCTCTAGTGGCAGCGCGGCTAGTCCCACGAGTGGAGCGCCCTTGAGGATTCGTGAAGGAGGACACGTGGGTTTGTTCTCTATTTTGCTCTTGGTCCTTGGGACTCTTCTTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

274

Amino Acids

29.15

Weight (kDa)

8.99

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 117 - 216 2.3e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
AatII GACGTC 1 cut(s) 465
Acc36I ACCTGC 1 cut(s) 550
AccB1I GGYRCC 2 cut(s) 392, 656
AccII CGCG 2 cut(s) 632, 722
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 7 cut(s) 174, 213, 309, 492, 630, 660, 722
AclWI GGATC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 651
AcuI CTGAAG 1 cut(s) 184
AcvI CACGTG 1 cut(s) 772
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 635, 667, 691
AfiI CCNNNNNNNGG 3 cut(s) 305, 312, 737
AflIII ACRYGT 1 cut(s) 769
AgsI TTSAA 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 3 cut(s) 320, 549, 568
AloI GAACNNNNNNTCC 2 cut(s) 179, 211
AluBI AGCT 3 cut(s) 231, 451, 484
AluI AGCT 3 cut(s) 231, 451, 484
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 3 cut(s) 93, 533, 644
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 207
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 4 cut(s) 324, 453, 565, 651
ApaI GGGCCC 1 cut(s) 569
ApeKI GCWGC 1 cut(s) 717
AseI ATTAAT 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 4 cut(s) 359, 479, 722, 745
AspS9I GGNCC 4 cut(s) 324, 565, 566, 799
AsuC2I CCSGG 2 cut(s) 354, 444
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 799
BaeGI GKGCMC 1 cut(s) 569
BanI GGYRCC 2 cut(s) 392, 656
BanII GRGCYC 2 cut(s) 486, 569
BauI CACGAG 1 cut(s) 733
BbrPI CACGTG 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 729
BccI CCATC 1 cut(s) 335
BceAI ACGGC 2 cut(s) 260, 406
BciT130I CCWGG 3 cut(s) 322, 551, 570
BclI TGATCA 1 cut(s) 402
BcnI CCSGG 2 cut(s) 354, 444
BcoDI GTCTC 3 cut(s) 93, 533, 644
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 5 cut(s) 663, 687, 711, 726, 823
BfoI RGCGCY 3 cut(s) 360, 480, 746
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 4 cut(s) 310, 630, 718, 723
BlsI GCNGC 4 cut(s) 311, 631, 719, 724
Bme1390I CCNGG 5 cut(s) 322, 354, 444, 551, 570
Bme18I GGWCC 1 cut(s) 799
BmgT120I GGNCC 4 cut(s) 324, 565, 566, 799
BmiI GGNNCC 5 cut(s) 394, 496, 525, 567, 658
BmrFI CCNGG 5 cut(s) 322, 354, 444, 551, 570
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 1 cut(s) 591
Bpu10I CCTNAGC 1 cut(s) 227
BpuEI CTTGAG 3 cut(s) 345, 664, 769
BpuMI CCSGG 2 cut(s) 354, 444
BsaAI YACGTR 1 cut(s) 772
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 321, 568, 802
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 6 cut(s) 155, 185, 242, 272, 756, 786
Bsc4I CCNNNNNNNGG 3 cut(s) 305, 312, 737
Bse118I RCCGGY 2 cut(s) 587, 653
Bse1I ACTGG 1 cut(s) 580
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 3 cut(s) 322, 551, 570
BseDI CCNNGG 3 cut(s) 321, 568, 802
BseLI CCNNNNNNNGG 3 cut(s) 305, 312, 737
BseMII CTCAG 3 cut(s) 44, 167, 241
BseNI ACTGG 1 cut(s) 580
BseRI GAGGAG 2 cut(s) 211, 256
BseSI GKGCMC 1 cut(s) 569
BseXI GCAGC 1 cut(s) 729
BsgI GTGCAG 1 cut(s) 193
Bsh1236I CGCG 2 cut(s) 632, 722
BshFI GGCC 4 cut(s) 326, 455, 567, 653
BshNI GGYRCC 2 cut(s) 392, 656
BsiHKAI GWGCWC 1 cut(s) 486
BsiSI CCGG 6 cut(s) 306, 354, 444, 527, 588, 654
BsiWI CGTACG 1 cut(s) 633
BslFI GGGAC 3 cut(s) 482, 714, 820
BslI CCNNNNNNNGG 3 cut(s) 305, 312, 737
BsmAI GTCTC 3 cut(s) 93, 533, 644
BsmBI CGTCTC 1 cut(s) 533
BsmFI GGGAC 3 cut(s) 482, 714, 820
BsnI GGCC 4 cut(s) 326, 455, 567, 653
Bso31I GGTCTC 1 cut(s) 644
Bsp120I GGGCCC 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 486, 569
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 3 cut(s) 120, 315, 402
BspACI CCGC 7 cut(s) 174, 213, 309, 492, 630, 660, 722
BspANI GGCC 4 cut(s) 326, 455, 567, 653
BspCNI CTCAG 3 cut(s) 45, 166, 240
BspEI TCCGGA 1 cut(s) 526
BspFNI CGCG 2 cut(s) 632, 722
BspHI TCATGA 1 cut(s) 597
BspLI GGNNCC 5 cut(s) 394, 496, 525, 567, 658
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 512
BspT107I GGYRCC 2 cut(s) 392, 656
BspTNI GGTCTC 1 cut(s) 644
BsrFI RCCGGY 2 cut(s) 587, 653
BsrI ACTGG 1 cut(s) 580
BssAI RCCGGY 2 cut(s) 587, 653
BssECI CCNNGG 3 cut(s) 321, 568, 802
BssMI GATC 3 cut(s) 120, 315, 402
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 733
BssT1I CCWWGG 1 cut(s) 802
Bst2BI CACGAG 1 cut(s) 733
Bst2UI CCWGG 3 cut(s) 322, 551, 570
Bst4CI ACNGT 2 cut(s) 517, 638
Bst6I CTCTTC 2 cut(s) 512, 816
BstACI GRCGYC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 772
BstC8I GCNNGC 2 cut(s) 453, 655
BstDEI CTNAG 3 cut(s) 53, 153, 227
BstFNI CGCG 2 cut(s) 632, 722
BstH2I RGCGCY 3 cut(s) 360, 480, 746
BstHHI GCGC 4 cut(s) 359, 479, 722, 745
BstKTI GATC 3 cut(s) 123, 318, 405
BstMAI GTCTC 3 cut(s) 93, 533, 644
BstMBI GATC 3 cut(s) 120, 315, 402
BstMWI GCNNNNNNNGC 3 cut(s) 287, 371, 659
BstNI CCWGG 3 cut(s) 322, 551, 570
BstSCI CCNGG 5 cut(s) 320, 352, 442, 549, 568
BstSLI GKGCMC 1 cut(s) 569
BstUI CGCG 2 cut(s) 632, 722
BstV1I GCAGC 1 cut(s) 729
BstV2I GAAGAC 1 cut(s) 393
BsuRI GGCC 4 cut(s) 326, 455, 567, 653
BtgZI GCGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 50
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 2 cut(s) 453, 655
CaiI CAGNNNCTG 1 cut(s) 207
CciI TCATGA 1 cut(s) 597
CfoI GCGC 4 cut(s) 359, 479, 722, 745
Cfr10I RCCGGY 2 cut(s) 587, 653
Cfr13I GGNCC 4 cut(s) 324, 565, 566, 799
CseI GACGC 1 cut(s) 550
CsiI ACCWGGT 1 cut(s) 549
Csp6I GTAC 3 cut(s) 634, 666, 690
CviAII CATG 2 cut(s) 400, 598
CviQI GTAC 3 cut(s) 634, 666, 690
DdeI CTNAG 3 cut(s) 53, 153, 227
DpnI GATC 3 cut(s) 122, 317, 404
DpnII GATC 3 cut(s) 120, 315, 402
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 512, 816
EarI CTCTTC 2 cut(s) 512, 816
EciI GGCGGA 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 484
Eco130I CCWWGG 1 cut(s) 802
Eco24I GRGCYC 2 cut(s) 486, 569
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 1 cut(s) 799
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 184
Eco72I CACGTG 1 cut(s) 772
EcoICRI GAGCTC 1 cut(s) 484
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 320, 549, 568
EcoT14I CCWWGG 1 cut(s) 802
EcoT38I GRGCYC 2 cut(s) 486, 569
ErhI CCWWGG 1 cut(s) 802
Esp3I CGTCTC 1 cut(s) 533
FaeI CATG 2 cut(s) 403, 601
FaiI YATR 7 cut(s) 8, 46, 246, 368, 401, 594, 599
FalI AAGNNNNNCTT 4 cut(s) 440, 472, 593, 625
FaqI GGGAC 3 cut(s) 482, 714, 820
FatI CATG 2 cut(s) 399, 597
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 4 cut(s) 310, 630, 718, 723
FriOI GRGCYC 2 cut(s) 486, 569
Fsp4HI GCNGC 4 cut(s) 310, 630, 718, 723
FspBI CTAG 5 cut(s) 663, 687, 711, 726, 823
GlaI GCGC 4 cut(s) 358, 478, 721, 744
GluI GCNGC 4 cut(s) 310, 630, 718, 723
GsuI CTGGAG 1 cut(s) 591
HaeII RGCGCY 3 cut(s) 360, 480, 746
HaeIII GGCC 4 cut(s) 326, 455, 567, 653
HapII CCGG 6 cut(s) 306, 354, 444, 527, 588, 654
HgaI GACGC 1 cut(s) 550
HhaI GCGC 4 cut(s) 359, 479, 722, 745
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 2 cut(s) 403, 601
Hin6I GCGC 4 cut(s) 357, 477, 720, 743
HinP1I GCGC 4 cut(s) 357, 477, 720, 743
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 3 cut(s) 573, 754, 808
HpaII CCGG 6 cut(s) 306, 354, 444, 527, 588, 654
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 2 cut(s) 577, 585
Hpy188III TCNNGA 6 cut(s) 118, 184, 527, 598, 643, 758
Hpy8I GTNNAC 2 cut(s) 577, 585
Hpy99I CGWCG 2 cut(s) 281, 464
HpyAV CCTTC 7 cut(s) 112, 121, 208, 292, 466, 526, 755
HpyCH4III ACNGT 2 cut(s) 517, 638
HpyCH4IV ACGT 2 cut(s) 462, 771
HpyCH4V TGCA 1 cut(s) 210
HpyF10VI GCNNNNNNNGC 3 cut(s) 287, 371, 659
HpyF3I CTNAG 3 cut(s) 53, 153, 227
HpySE526I ACGT 2 cut(s) 462, 771
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 2 cut(s) 403, 601
HspAI GCGC 4 cut(s) 357, 477, 720, 743
Kpn2I TCCGGA 1 cut(s) 526
KroI GCCGGC 1 cut(s) 653
KroNI GCCGGC 1 cut(s) 655
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 3 cut(s) 120, 315, 402
LguI GCTCTTC 1 cut(s) 512
LmnI GCTCC 2 cut(s) 236, 740
Lsp1109I GCAGC 1 cut(s) 729
MabI ACCWGGT 1 cut(s) 549
MaeI CTAG 5 cut(s) 663, 687, 711, 726, 823
MaeII ACGT 2 cut(s) 462, 771
MaeIII GTNAC 1 cut(s) 48
MalI GATC 3 cut(s) 122, 317, 404
MboI GATC 3 cut(s) 120, 315, 402
MboII GAAGA 3 cut(s) 398, 499, 803
MhlI GDGCHC 2 cut(s) 486, 569
MluCI AATT 2 cut(s) 39, 70
MlyI GAGTC 2 cut(s) 582, 802
MmeI TCCRAC 1 cut(s) 285
MroI TCCGGA 1 cut(s) 526
MroNI GCCGGC 1 cut(s) 653
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 2 cut(s) 38, 500
MslI CAYNNNNRTG 2 cut(s) 347, 398
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 6 cut(s) 306, 354, 444, 527, 588, 654
MspR9I CCNGG 5 cut(s) 322, 354, 444, 551, 570
MvaI CCWGG 3 cut(s) 322, 551, 570
MvnI CGCG 2 cut(s) 632, 722
MwoI GCNNNNNNNGC 3 cut(s) 287, 371, 659
NaeI GCCGGC 1 cut(s) 655
NciI CCSGG 2 cut(s) 354, 444
NdeII GATC 3 cut(s) 120, 315, 402
NgoMIV GCCGGC 1 cut(s) 653
NlaIII CATG 2 cut(s) 403, 601
NlaIV GGNNCC 5 cut(s) 394, 496, 525, 567, 658
NmeAIII GCCGAG 2 cut(s) 110, 505
NmuCI GTSAC 1 cut(s) 48
PagI TCATGA 1 cut(s) 597
PaqCI CACCTGC 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 512
PdiI GCCGGC 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 754
Pfl23II CGTACG 1 cut(s) 633
PfoI TCCNGGA 1 cut(s) 442
PkrI GCNGC 4 cut(s) 311, 631, 719, 724
PleI GAGTC 2 cut(s) 581, 802
PmaCI CACGTG 1 cut(s) 772
PmlI CACGTG 1 cut(s) 772
PpsI GAGTC 2 cut(s) 581, 802
Ppu21I YACGTR 1 cut(s) 772
PshBI ATTAAT 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 486
Psp6I CCWGG 3 cut(s) 320, 549, 568
PspCI CACGTG 1 cut(s) 772
PspGI CCWGG 3 cut(s) 320, 549, 568
PspLI CGTACG 1 cut(s) 633
PspN4I GGNNCC 5 cut(s) 394, 496, 525, 567, 658
PspOMI GGGCCC 1 cut(s) 565
PspPI GGNCC 4 cut(s) 324, 565, 566, 799
PstNI CAGNNNCTG 1 cut(s) 207
RsaI GTAC 3 cut(s) 635, 667, 691
RsaNI GTAC 3 cut(s) 634, 666, 690
RseI CAYNNNNRTG 2 cut(s) 347, 398
SacI GAGCTC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 512
SaqAI TTAA 2 cut(s) 38, 500
SatI GCNGC 4 cut(s) 310, 630, 718, 723
Sau3AI GATC 3 cut(s) 120, 315, 402
Sau96I GGNCC 4 cut(s) 324, 565, 566, 799
SchI GAGTC 2 cut(s) 582, 802
ScrFI CCNGG 5 cut(s) 322, 354, 444, 551, 570
SduI GDGCHC 2 cut(s) 486, 569
SexAI ACCWGGT 1 cut(s) 549
SinI GGWCC 1 cut(s) 799
SmiMI CAYNNNNRTG 2 cut(s) 347, 398
SmlI CTYRAG 3 cut(s) 360, 643, 748
SmoI CTYRAG 3 cut(s) 360, 643, 748
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 2 cut(s) 39, 70
SsiI CCGC 7 cut(s) 174, 213, 309, 492, 630, 660, 722
SspMI CTAG 5 cut(s) 663, 687, 711, 726, 823
SstI GAGCTC 1 cut(s) 486
StyD4I CCNGG 5 cut(s) 320, 352, 442, 549, 568
StyI CCWWGG 1 cut(s) 802
TaaI ACNGT 2 cut(s) 517, 638
TaiI ACGT 2 cut(s) 465, 774
TaqI TCGA 1 cut(s) 459
TasI AATT 2 cut(s) 39, 70
TauI GCSGC 3 cut(s) 312, 632, 725
TfiI GAWTC 1 cut(s) 754
Tru1I TTAA 2 cut(s) 38, 500
Tru9I TTAA 2 cut(s) 38, 500
TscAI CASTG 1 cut(s) 57
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 717
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 2 cut(s) 274, 614
TspRI CASTG 1 cut(s) 57
VpaK11BI GGWCC 1 cut(s) 799
VspI ATTAAT 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 5 cut(s) 663, 687, 711, 726, 823
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.