MD05G1164300.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013370
Physical Location & Seq
Reverse (-)
29311464 .. 29312192
729 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1164300.v1.1.491

Sequence Viewer

Length: 729 bp
ATGGCTTCCTCTCTCCCTCTCTCTCTCCTCCAGATTTCATGCATTTCCCTCCTATTGGCTCTGCTAATCTCGCCGGCCGTACAAGCAGCCACCTGCAACTCACAGACATTCAAAAACAAGTTATACTCCAACTGCTCCGACCTCCCCGTCCTCAGCTCCTACCTCCACTGGACGTACGACCGCTCCAACTCCTCCCTCTCCATTGCCTTCGTCGCCGCCCCCGCCAAGACCGACGGCTGGGTCGCCTGGGCCATCAACCCCACAGCCGAAAGAATGGCCGGGTCCCAGGCCCTACTGGCCCACCTAACTGCTAACGGCACCCCGACCGTCACAACCTACAACATCAGCTCCTACGCCTCCATCATTCCCGGAAAGCTCTCGTTCGACGTCTGGGACGTCAGCGCCGAGTTCTCCAGCGGCACCTTCATGATCTTCGCCACCGTCAAGGTCAAAAAAGACGCGGTGTCCGTCAACCACGTCTGGCAGGTGGGCCCCGGAGTCAACACCACCACCGGTTTCCCTGAAAAGCATGACTTCTCCCCCGCCAATCTCAGGTCCTATGAGACCTTGCCCTTGGTAGCTAATTCCACTACCAACACCACCACGGGCGGTGGCTCCACCACTAACACCACTGGCGGCGGTAGTGGGTCTTTGAGGACTGGGATTGGAGGAAACATGGGTTTGTTTTCCATTTCGCTTTTGGTTCTTGGAGCTCTCATTGCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

243

Amino Acids

25.32

Weight (kDa)

7.73

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 92 - 191 2.1e-27 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 101, 475
AasI GACNNNNNNGTC 2 cut(s) 146, 239
AatII GACGTC 2 cut(s) 390, 399
Acc36I ACCTGC 2 cut(s) 101, 475
AccB1I GGYRCC 2 cut(s) 317, 419
AccBSI CCGCTC 1 cut(s) 183
AccII CGCG 1 cut(s) 461
AciI CCGC 9 cut(s) 181, 216, 222, 417, 461, 543, 609, 636, 639
AcoI YGGCCR 2 cut(s) 75, 276
AcyI GRCGYC 2 cut(s) 387, 396
AfaI GTAC 2 cut(s) 81, 176
AfiI CCNNNNNNNGG 3 cut(s) 55, 237, 552
AgeI ACCGGT 1 cut(s) 512
AgsI TTSAA 1 cut(s) 112
AhdI GACNNNNNGTC 1 cut(s) 463
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 2 cut(s) 245, 285
AluBI AGCT 5 cut(s) 156, 348, 376, 581, 713
AluI AGCT 5 cut(s) 156, 348, 376, 581, 713
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 1 cut(s) 557
AoxI GGCC 6 cut(s) 75, 249, 276, 288, 297, 490
ApaI GGGCCC 1 cut(s) 494
ApeKI GCWGC 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 512
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 7 cut(s) 249, 282, 289, 298, 490, 491, 555
AsuC2I CCSGG 3 cut(s) 280, 369, 495
AvaII GGWCC 2 cut(s) 282, 555
BaeGI GKGCMC 1 cut(s) 494
BanI GGYRCC 2 cut(s) 317, 419
BanII GRGCYC 2 cut(s) 494, 715
Bbv12I GWGCWC 1 cut(s) 715
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 260, 368
BceAI ACGGC 3 cut(s) 62, 250, 331
BciT130I CCWGG 2 cut(s) 247, 287
BcnI CCSGG 3 cut(s) 280, 369, 495
BcoDI GTCTC 1 cut(s) 557
BfoI RGCGCY 1 cut(s) 405
BfuAI ACCTGC 2 cut(s) 101, 475
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 4 cut(s) 87, 216, 418, 637
BlsI GCNGC 4 cut(s) 88, 217, 419, 638
Bme1390I CCNGG 5 cut(s) 247, 280, 287, 369, 495
Bme18I GGWCC 2 cut(s) 282, 555
BmeRI GACNNNNNGTC 1 cut(s) 463
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 7 cut(s) 249, 282, 289, 298, 490, 491, 555
BmiI GGNNCC 7 cut(s) 283, 284, 319, 421, 492, 493, 616
BmrFI CCNGG 5 cut(s) 247, 280, 287, 369, 495
BmrI ACTGGG 1 cut(s) 669
BmuI ACTGGG 1 cut(s) 669
BpmI CTGGAG 2 cut(s) 14, 397
Bpu10I CCTNAGC 1 cut(s) 152
BpuMI CCSGG 3 cut(s) 280, 369, 495
BsaHI GRCGYC 2 cut(s) 387, 396
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 5 cut(s) 246, 285, 493, 573, 603
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 4 cut(s) 167, 197, 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 237, 552
Bse118I RCCGGY 2 cut(s) 73, 512
Bse1I ACTGG 4 cut(s) 173, 300, 637, 664
Bse3DI GCAATG 2 cut(s) 201, 717
BseBI CCWGG 2 cut(s) 247, 287
BseDI CCNNGG 5 cut(s) 246, 285, 493, 573, 603
BseLI CCNNNNNNNGG 3 cut(s) 55, 237, 552
BseMI GCAATG 2 cut(s) 201, 717
BseMII CTCAG 2 cut(s) 166, 565
BseNI ACTGG 4 cut(s) 173, 300, 637, 664
BseRI GAGGAG 2 cut(s) 17, 181
BseSI GKGCMC 1 cut(s) 494
BseX3I CGGCCG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 3 cut(s) 78, 181, 327
BshFI GGCC 6 cut(s) 77, 251, 278, 290, 299, 492
BshNI GGYRCC 2 cut(s) 317, 419
BshTI ACCGGT 1 cut(s) 512
BsiEI CGRYCG 3 cut(s) 78, 181, 327
BsiHKAI GWGCWC 1 cut(s) 715
BsiSI CCGG 5 cut(s) 74, 279, 369, 495, 513
BsiWI CGTACG 1 cut(s) 174
BslFI GGGAC 2 cut(s) 268, 407
BslI CCNNNNNNNGG 3 cut(s) 55, 237, 552
BsmAI GTCTC 1 cut(s) 557
BsmFI GGGAC 2 cut(s) 268, 407
BsnI GGCC 6 cut(s) 77, 251, 278, 290, 299, 492
Bso31I GGTCTC 1 cut(s) 557
Bsp120I GGGCCC 1 cut(s) 490
Bsp1286I GDGCHC 2 cut(s) 494, 715
Bsp143I GATC 1 cut(s) 429
BspACI CCGC 9 cut(s) 181, 216, 222, 417, 461, 543, 609, 636, 639
BspANI GGCC 6 cut(s) 77, 251, 278, 290, 299, 492
BspCNI CTCAG 2 cut(s) 165, 564
BspFNI CGCG 1 cut(s) 461
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 7 cut(s) 283, 284, 319, 421, 492, 493, 616
BspMI ACCTGC 2 cut(s) 101, 475
BspT107I GGYRCC 2 cut(s) 317, 419
BspTNI GGTCTC 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 2 cut(s) 201, 717
BsrFI RCCGGY 2 cut(s) 73, 512
BsrI ACTGG 4 cut(s) 173, 300, 637, 664
BssAI RCCGGY 2 cut(s) 73, 512
BssECI CCNNGG 5 cut(s) 246, 285, 493, 573, 603
BssMI GATC 1 cut(s) 429
BssNI GRCGYC 2 cut(s) 387, 396
BssT1I CCWWGG 1 cut(s) 573
Bst2UI CCWGG 2 cut(s) 247, 287
Bst4CI ACNGT 2 cut(s) 328, 442
BstACI GRCGYC 2 cut(s) 387, 396
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 2 cut(s) 152, 551
BstDSI CCRYGG 1 cut(s) 603
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 432
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 1 cut(s) 429
BstMCI CGRYCG 3 cut(s) 78, 181, 327
BstMWI GCNNNNNNNGC 6 cut(s) 70, 83, 212, 221, 296, 719
BstNI CCWGG 2 cut(s) 247, 287
BstSCI CCNGG 5 cut(s) 245, 278, 285, 367, 493
BstSLI GKGCMC 1 cut(s) 494
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 98
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 6 cut(s) 77, 251, 278, 290, 299, 492
BtgI CCRYGG 1 cut(s) 603
BtrI CACGTC 1 cut(s) 478
BtsIMutI CAGTG 2 cut(s) 166, 630
BveI ACCTGC 2 cut(s) 101, 475
Cac8I GCNNGC 1 cut(s) 75
CciI TCATGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 404
Cfr10I RCCGGY 2 cut(s) 73, 512
Cfr13I GGNCC 7 cut(s) 249, 282, 289, 298, 490, 491, 555
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 80, 175
CspAI ACCGGT 1 cut(s) 512
CviAII CATG 4 cut(s) 39, 427, 530, 676
CviQI GTAC 2 cut(s) 80, 175
DdeI CTNAG 2 cut(s) 152, 551
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DrdI GACNNNNNNGTC 2 cut(s) 146, 239
DriI GACNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 2 cut(s) 146, 239
EaeI YGGCCR 2 cut(s) 75, 276
EagI CGGCCG 1 cut(s) 75
Eam1105I GACNNNNNGTC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 713
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 494, 715
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 2 cut(s) 282, 555
Eco52I CGGCCG 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 713
EcoICRI GAGCTC 1 cut(s) 713
EcoO109I RGGNCCY 4 cut(s) 282, 289, 491, 555
EcoRII CCWGG 2 cut(s) 245, 285
EcoT14I CCWWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 2 cut(s) 494, 715
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 4 cut(s) 42, 430, 533, 679
FaiI YATR 6 cut(s) 40, 124, 428, 531, 561, 677
FalI AAGNNNNNCTT 2 cut(s) 518, 550
FaqI GGGAC 2 cut(s) 268, 407
FatI CATG 4 cut(s) 38, 426, 529, 675
FauI CCCGC 2 cut(s) 229, 550
Fnu4HI GCNGC 4 cut(s) 87, 216, 418, 637
FriOI GRGCYC 2 cut(s) 494, 715
Fsp4HI GCNGC 4 cut(s) 87, 216, 418, 637
GlaI GCGC 1 cut(s) 403
GluI GCNGC 4 cut(s) 87, 216, 418, 637
GsaI CCCAGC 1 cut(s) 241
GsuI CTGGAG 2 cut(s) 14, 397
HaeII RGCGCY 1 cut(s) 405
HaeIII GGCC 6 cut(s) 77, 251, 278, 290, 299, 492
HapII CCGG 5 cut(s) 74, 279, 369, 495, 513
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 2 cut(s) 387, 396
Hin1II CATG 4 cut(s) 42, 430, 533, 679
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 2 cut(s) 472, 502
HindII GTYRAC 2 cut(s) 472, 502
HinfI GANTC 1 cut(s) 498
HpaII CCGG 5 cut(s) 74, 279, 369, 495, 513
Hpy166II GTNNAC 2 cut(s) 472, 502
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 2 cut(s) 31, 427
Hpy8I GTNNAC 2 cut(s) 472, 502
Hpy99I CGWCG 3 cut(s) 215, 236, 389
HpyAV CCTTC 2 cut(s) 217, 433
HpyCH4III ACNGT 2 cut(s) 328, 442
HpyCH4IV ACGT 4 cut(s) 173, 387, 396, 477
HpyCH4V TGCA 2 cut(s) 42, 96
HpyF10VI GCNNNNNNNGC 6 cut(s) 70, 83, 212, 221, 296, 719
HpyF3I CTNAG 2 cut(s) 152, 551
HpySE526I ACGT 4 cut(s) 173, 387, 396, 477
Hsp92I GRCGYC 2 cut(s) 387, 396
Hsp92II CATG 4 cut(s) 42, 430, 533, 679
HspAI GCGC 1 cut(s) 402
KflI GGGWCCC 1 cut(s) 282
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 6 cut(s) 140, 161, 188, 353, 620, 710
Lsp1109I GCAGC 1 cut(s) 98
MaeII ACGT 4 cut(s) 173, 387, 396, 477
MaeIII GTNAC 1 cut(s) 328
MalI GATC 1 cut(s) 431
MbiI CCGCTC 1 cut(s) 183
MboI GATC 1 cut(s) 429
MboII GAAGA 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 494, 715
MluCI AATT 1 cut(s) 583
MlyI GAGTC 1 cut(s) 507
MmeI TCCRAC 3 cut(s) 153, 162, 210
Mph1103I ATGCAT 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 73
MslI CAYNNNNRTG 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 5 cut(s) 74, 279, 369, 495, 513
MspR9I CCNGG 5 cut(s) 247, 280, 287, 369, 495
MvaI CCWGG 2 cut(s) 247, 287
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 6 cut(s) 70, 83, 212, 221, 296, 719
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 3 cut(s) 280, 369, 495
NdeII GATC 1 cut(s) 429
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 4 cut(s) 42, 430, 533, 679
NlaIV GGNNCC 7 cut(s) 283, 284, 319, 421, 492, 493, 616
NmeAIII GCCGAG 1 cut(s) 430
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 44
PagI TCATGA 1 cut(s) 426
PaqCI CACCTGC 2 cut(s) 101, 475
PcsI WCGNNNNNNNCGW 3 cut(s) 393, 402, 465
PdiI GCCGGC 1 cut(s) 75
Pfl23II CGTACG 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 512
PkrI GCNGC 4 cut(s) 88, 217, 419, 638
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PpuMI RGGWCCY 2 cut(s) 282, 555
Psp124BI GAGCTC 1 cut(s) 715
Psp5II RGGWCCY 2 cut(s) 282, 555
Psp6I CCWGG 2 cut(s) 245, 285
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 2 cut(s) 245, 285
PspLI CGTACG 1 cut(s) 174
PspN4I GGNNCC 7 cut(s) 283, 284, 319, 421, 492, 493, 616
PspOMI GGGCCC 1 cut(s) 490
PspPI GGNCC 7 cut(s) 249, 282, 289, 298, 490, 491, 555
PspPPI RGGWCCY 2 cut(s) 282, 555
RsaI GTAC 2 cut(s) 81, 176
RsaNI GTAC 2 cut(s) 80, 175
RseI CAYNNNNRTG 1 cut(s) 425
SacI GAGCTC 1 cut(s) 715
SatI GCNGC 4 cut(s) 87, 216, 418, 637
Sau3AI GATC 1 cut(s) 429
Sau96I GGNCC 7 cut(s) 249, 282, 289, 298, 490, 491, 555
SchI GAGTC 1 cut(s) 507
ScrFI CCNGG 5 cut(s) 247, 280, 287, 369, 495
SduI GDGCHC 2 cut(s) 494, 715
SfiI GGCCNNNNNGGCC 1 cut(s) 296
SinI GGWCC 2 cut(s) 282, 555
SmiMI CAYNNNNRTG 1 cut(s) 425
Sse9I AATT 1 cut(s) 583
SsiI CCGC 9 cut(s) 181, 216, 222, 417, 461, 543, 609, 636, 639
SstI GAGCTC 1 cut(s) 715
StyD4I CCNGG 5 cut(s) 245, 278, 285, 367, 493
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 2 cut(s) 328, 442
TaiI ACGT 4 cut(s) 176, 390, 399, 480
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 245
TasI AATT 1 cut(s) 583
TauI GCSGC 3 cut(s) 218, 420, 639
TscAI CASTG 2 cut(s) 173, 637
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 27, 415
TspGWI ACGGA 1 cut(s) 457
TspRI CASTG 2 cut(s) 173, 637
VpaK11BI GGWCC 2 cut(s) 282, 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
ZraI GACGTC 2 cut(s) 388, 397
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.