Auxin-induced in root cultures protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G07390 AT3G07390 |
| fragaria_vesca | FvH4_2g18001 |
| malus_domestica | MD05G1164300.v1.1 MD10G1153800.v1.1 |
| prunus_persica | Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0283381 |
| rosa_laevigata | RLG00000012831 |
| rosa_multiflora | Rmu_sc0003166.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00185570 |
| rosa_rugosa | Rorug06G0153500 |
| rosa_samantha | Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800 |
| rosa_wichuraiana | Rw6G023020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 98 |
| AatII | GACGTC | 1 cut(s) | 399 |
| Acc36I | ACCTGC | 1 cut(s) | 98 |
| AccII | CGCG | 2 cut(s) | 380, 404 |
| AciI | CCGC | 6 cut(s) | 264, 267, 404, 495, 621, 648 |
| AclWI | GGATC | 1 cut(s) | 53 |
| AcoI | YGGCCR | 1 cut(s) | 579 |
| AcuI | CTGAAG | 1 cut(s) | 252 |
| AcyI | GRCGYC | 2 cut(s) | 218, 396 |
| AfaI | GTAC | 2 cut(s) | 353, 572 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AgsI | TTSAA | 2 cut(s) | 109, 340 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 463 |
| AjnI | CCWGG | 3 cut(s) | 54, 294, 474 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 407, 439 |
| AluBI | AGCT | 6 cut(s) | 96, 121, 156, 357, 653, 716 |
| AluI | AGCT | 6 cut(s) | 96, 121, 156, 357, 653, 716 |
| Alw21I | GWGCWC | 1 cut(s) | 718 |
| Alw26I | GTCTC | 2 cut(s) | 37, 43 |
| AlwI | GGATC | 1 cut(s) | 53 |
| AoxI | GGCC | 5 cut(s) | 249, 282, 297, 490, 579 |
| ApaI | GGGCCC | 2 cut(s) | 286, 494 |
| ApeKI | GCWGC | 4 cut(s) | 83, 93, 135, 461 |
| AspLEI | GCGC | 1 cut(s) | 404 |
| AspS9I | GGNCC | 7 cut(s) | 171, 249, 282, 283, 448, 490, 491 |
| AsuC2I | CCSGG | 1 cut(s) | 369 |
| AsuHPI | GGTGA | 2 cut(s) | 63, 337 |
| AvaII | GGWCC | 2 cut(s) | 171, 448 |
| BaeGI | GKGCMC | 3 cut(s) | 286, 494, 599 |
| BalI | TGGCCA | 1 cut(s) | 581 |
| BanII | GRGCYC | 4 cut(s) | 286, 322, 494, 718 |
| Bbv12I | GWGCWC | 1 cut(s) | 718 |
| BbvCI | CCTCAGC | 1 cut(s) | 152 |
| BbvI | GCAGC | 4 cut(s) | 95, 105, 147, 473 |
| BccI | CCATC | 6 cut(s) | 209, 260, 268, 308, 506, 571 |
| BceAI | ACGGC | 1 cut(s) | 205 |
| BciT130I | CCWGG | 3 cut(s) | 56, 296, 476 |
| BcnI | CCSGG | 1 cut(s) | 369 |
| BcoDI | GTCTC | 2 cut(s) | 37, 43 |
| BfmI | CTRYAG | 2 cut(s) | 91, 133 |
| BfuAI | ACCTGC | 1 cut(s) | 98 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 212, 275 |
| BisI | GCNGC | 5 cut(s) | 84, 94, 136, 267, 462 |
| BlsI | GCNGC | 5 cut(s) | 85, 95, 137, 268, 463 |
| Bme1390I | CCNGG | 4 cut(s) | 56, 296, 369, 476 |
| Bme18I | GGWCC | 2 cut(s) | 171, 448 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 463 |
| BmgT120I | GGNCC | 7 cut(s) | 171, 249, 282, 283, 448, 490, 491 |
| BmiI | GGNNCC | 6 cut(s) | 283, 284, 319, 450, 492, 493 |
| BmrFI | CCNGG | 4 cut(s) | 56, 296, 369, 476 |
| BmrI | ACTGGG | 1 cut(s) | 317 |
| BmuI | ACTGGG | 1 cut(s) | 317 |
| BpmI | CTGGAG | 1 cut(s) | 536 |
| Bpu10I | CCTNAGC | 1 cut(s) | 152 |
| BpuMI | CCSGG | 1 cut(s) | 369 |
| BsaHI | GRCGYC | 2 cut(s) | 218, 396 |
| BsaJI | CCNNGG | 2 cut(s) | 309, 591 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| Bse1I | ACTGG | 4 cut(s) | 173, 323, 553, 637 |
| Bse3DI | GCAATG | 1 cut(s) | 720 |
| BseBI | CCWGG | 3 cut(s) | 56, 296, 476 |
| BseDI | CCNNGG | 2 cut(s) | 309, 591 |
| BseGI | GGATG | 1 cut(s) | 319 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMI | GCAATG | 1 cut(s) | 720 |
| BseMII | CTCAG | 2 cut(s) | 48, 166 |
| BseNI | ACTGG | 4 cut(s) | 173, 323, 553, 637 |
| BseSI | GKGCMC | 3 cut(s) | 286, 494, 599 |
| BseXI | GCAGC | 4 cut(s) | 95, 105, 147, 473 |
| BseYI | CCCAGC | 2 cut(s) | 237, 278 |
| Bsh1236I | CGCG | 2 cut(s) | 380, 404 |
| BshFI | GGCC | 5 cut(s) | 251, 284, 299, 492, 581 |
| BsiHKAI | GWGCWC | 1 cut(s) | 718 |
| BsiSI | CCGG | 2 cut(s) | 368, 513 |
| BslFI | GGGAC | 2 cut(s) | 407, 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsmAI | GTCTC | 2 cut(s) | 37, 43 |
| BsmFI | GGGAC | 2 cut(s) | 407, 434 |
| BsnI | GGCC | 5 cut(s) | 251, 284, 299, 492, 581 |
| Bsp120I | GGGCCC | 2 cut(s) | 282, 490 |
| Bsp1286I | GDGCHC | 5 cut(s) | 286, 322, 494, 599, 718 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| BspACI | CCGC | 6 cut(s) | 264, 267, 404, 495, 621, 648 |
| BspANI | GGCC | 5 cut(s) | 251, 284, 299, 492, 581 |
| BspCNI | CTCAG | 2 cut(s) | 47, 165 |
| BspFNI | CGCG | 2 cut(s) | 380, 404 |
| BspLI | GGNNCC | 6 cut(s) | 283, 284, 319, 450, 492, 493 |
| BspMAI | CTGCAG | 2 cut(s) | 95, 137 |
| BspMI | ACCTGC | 1 cut(s) | 98 |
| BspPI | GGATC | 1 cut(s) | 53 |
| BsrDI | GCAATG | 1 cut(s) | 720 |
| BsrI | ACTGG | 4 cut(s) | 173, 323, 553, 637 |
| BssECI | CCNNGG | 2 cut(s) | 309, 591 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssNI | GRCGYC | 2 cut(s) | 218, 396 |
| Bst2UI | CCWGG | 3 cut(s) | 56, 296, 476 |
| Bst6I | CTCTTC | 1 cut(s) | 18 |
| BstACI | GRCGYC | 2 cut(s) | 218, 396 |
| BstDEI | CTNAG | 2 cut(s) | 34, 152 |
| BstDSI | CCRYGG | 1 cut(s) | 591 |
| BstF5I | GGATG | 1 cut(s) | 319 |
| BstFNI | CGCG | 2 cut(s) | 380, 404 |
| BstHHI | GCGC | 1 cut(s) | 404 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 2 cut(s) | 37, 43 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 83, 212, 275, 722 |
| BstNI | CCWGG | 3 cut(s) | 56, 296, 476 |
| BstSCI | CCNGG | 4 cut(s) | 54, 294, 367, 474 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 133 |
| BstSLI | GKGCMC | 3 cut(s) | 286, 494, 599 |
| BstUI | CGCG | 2 cut(s) | 380, 404 |
| BstV1I | GCAGC | 4 cut(s) | 95, 105, 147, 473 |
| BstX2I | RGATCY | 1 cut(s) | 45 |
| BstYI | RGATCY | 1 cut(s) | 45 |
| BsuRI | GGCC | 5 cut(s) | 251, 284, 299, 492, 581 |
| BtgI | CCRYGG | 1 cut(s) | 591 |
| BtgZI | GCGATG | 1 cut(s) | 187 |
| BtsCI | GGATG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 2 cut(s) | 166, 630 |
| BveI | ACCTGC | 1 cut(s) | 98 |
| CfoI | GCGC | 1 cut(s) | 404 |
| Cfr13I | GGNCC | 7 cut(s) | 171, 249, 282, 283, 448, 490, 491 |
| CseI | GACGC | 3 cut(s) | 226, 453, 467 |
| CsiI | ACCWGGT | 1 cut(s) | 474 |
| Csp6I | GTAC | 2 cut(s) | 352, 571 |
| CviAII | CATG | 3 cut(s) | 42, 530, 679 |
| CviQI | GTAC | 2 cut(s) | 352, 571 |
| DdeI | CTNAG | 2 cut(s) | 34, 152 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| DriI | GACNNNNNGTC | 1 cut(s) | 463 |
| EaeI | YGGCCR | 1 cut(s) | 579 |
| Eam1104I | CTCTTC | 1 cut(s) | 18 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 463 |
| EarI | CTCTTC | 1 cut(s) | 18 |
| Ecl136II | GAGCTC | 1 cut(s) | 716 |
| Eco24I | GRGCYC | 4 cut(s) | 286, 322, 494, 718 |
| Eco47I | GGWCC | 2 cut(s) | 171, 448 |
| Eco53kI | GAGCTC | 1 cut(s) | 716 |
| Eco57I | CTGAAG | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 716 |
| EcoO109I | RGGNCCY | 3 cut(s) | 282, 448, 491 |
| EcoRII | CCWGG | 3 cut(s) | 54, 294, 474 |
| EcoT38I | GRGCYC | 4 cut(s) | 286, 322, 494, 718 |
| FaeI | CATG | 3 cut(s) | 45, 533, 682 |
| FaiI | YATR | 4 cut(s) | 43, 391, 531, 680 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 518, 550 |
| FaqI | GGGAC | 2 cut(s) | 407, 434 |
| FatI | CATG | 3 cut(s) | 41, 529, 678 |
| FauI | CCCGC | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 5 cut(s) | 84, 94, 136, 267, 462 |
| FokI | GGATG | 1 cut(s) | 326 |
| FriOI | GRGCYC | 4 cut(s) | 286, 322, 494, 718 |
| Fsp4HI | GCNGC | 5 cut(s) | 84, 94, 136, 267, 462 |
| GlaI | GCGC | 1 cut(s) | 403 |
| GluI | GCNGC | 5 cut(s) | 84, 94, 136, 267, 462 |
| GsaI | CCCAGC | 2 cut(s) | 241, 282 |
| GsuI | CTGGAG | 1 cut(s) | 536 |
| HaeIII | GGCC | 5 cut(s) | 251, 284, 299, 492, 581 |
| HapII | CCGG | 2 cut(s) | 368, 513 |
| HgaI | GACGC | 3 cut(s) | 226, 453, 467 |
| HhaI | GCGC | 1 cut(s) | 404 |
| Hin1I | GRCGYC | 2 cut(s) | 218, 396 |
| Hin1II | CATG | 3 cut(s) | 45, 533, 682 |
| Hin6I | GCGC | 1 cut(s) | 402 |
| HinP1I | GCGC | 1 cut(s) | 402 |
| HpaII | CCGG | 2 cut(s) | 368, 513 |
| HphI | GGTGA | 2 cut(s) | 63, 337 |
| Hpy166II | GTNNAC | 2 cut(s) | 426, 472 |
| Hpy188I | TCNGA | 1 cut(s) | 232 |
| Hpy188III | TCNNGA | 2 cut(s) | 109, 427 |
| Hpy8I | GTNNAC | 2 cut(s) | 426, 472 |
| Hpy99I | CGWCG | 2 cut(s) | 220, 389 |
| HpyAV | CCTTC | 3 cut(s) | 157, 217, 227 |
| HpyCH4IV | ACGT | 3 cut(s) | 387, 396, 422 |
| HpyCH4V | TGCA | 3 cut(s) | 93, 135, 725 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 83, 212, 275, 722 |
| HpyF3I | CTNAG | 2 cut(s) | 34, 152 |
| HpySE526I | ACGT | 3 cut(s) | 387, 396, 422 |
| Hsp92I | GRCGYC | 2 cut(s) | 218, 396 |
| Hsp92II | CATG | 3 cut(s) | 45, 533, 682 |
| HspAI | GCGC | 1 cut(s) | 402 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LmnI | GCTCC | 5 cut(s) | 161, 317, 362, 650, 713 |
| Lsp1109I | GCAGC | 4 cut(s) | 95, 105, 147, 473 |
| MabI | ACCWGGT | 1 cut(s) | 474 |
| MaeII | ACGT | 3 cut(s) | 387, 396, 422 |
| MalI | GATC | 1 cut(s) | 47 |
| MboI | GATC | 1 cut(s) | 45 |
| MboII | GAAGA | 4 cut(s) | 5, 11, 14, 17 |
| MflI | RGATCY | 1 cut(s) | 45 |
| MhlI | GDGCHC | 5 cut(s) | 286, 322, 494, 599, 718 |
| MlsI | TGGCCA | 1 cut(s) | 581 |
| MluCI | AATT | 3 cut(s) | 187, 583, 613 |
| MluNI | TGGCCA | 1 cut(s) | 581 |
| Mox20I | TGGCCA | 1 cut(s) | 581 |
| MscI | TGGCCA | 1 cut(s) | 581 |
| MslI | CAYNNNNRTG | 1 cut(s) | 683 |
| Msp20I | TGGCCA | 1 cut(s) | 581 |
| MspI | CCGG | 2 cut(s) | 368, 513 |
| MspR9I | CCNGG | 4 cut(s) | 56, 296, 369, 476 |
| MvaI | CCWGG | 3 cut(s) | 56, 296, 476 |
| MvnI | CGCG | 2 cut(s) | 380, 404 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 83, 212, 275, 722 |
| NciI | CCSGG | 1 cut(s) | 369 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 3 cut(s) | 45, 533, 682 |
| NlaIV | GGNNCC | 6 cut(s) | 283, 284, 319, 450, 492, 493 |
| PaqCI | CACCTGC | 1 cut(s) | 98 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 384, 393, 465 |
| PflFI | GACNNNGTC | 1 cut(s) | 220 |
| PkrI | GCNGC | 5 cut(s) | 85, 95, 137, 268, 463 |
| PpuMI | RGGWCCY | 1 cut(s) | 448 |
| Psp124BI | GAGCTC | 1 cut(s) | 718 |
| Psp5II | RGGWCCY | 1 cut(s) | 448 |
| Psp6I | CCWGG | 3 cut(s) | 54, 294, 474 |
| PspFI | CCCAGC | 2 cut(s) | 237, 278 |
| PspGI | CCWGG | 3 cut(s) | 54, 294, 474 |
| PspN4I | GGNNCC | 6 cut(s) | 283, 284, 319, 450, 492, 493 |
| PspOMI | GGGCCC | 2 cut(s) | 282, 490 |
| PspPI | GGNCC | 7 cut(s) | 171, 249, 282, 283, 448, 490, 491 |
| PspPPI | RGGWCCY | 1 cut(s) | 448 |
| PstI | CTGCAG | 2 cut(s) | 95, 137 |
| PsuI | RGATCY | 1 cut(s) | 45 |
| PsyI | GACNNNGTC | 1 cut(s) | 220 |
| RsaI | GTAC | 2 cut(s) | 353, 572 |
| RsaNI | GTAC | 2 cut(s) | 352, 571 |
| RseI | CAYNNNNRTG | 1 cut(s) | 683 |
| SacI | GAGCTC | 1 cut(s) | 718 |
| SatI | GCNGC | 5 cut(s) | 84, 94, 136, 267, 462 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| Sau96I | GGNCC | 7 cut(s) | 171, 249, 282, 283, 448, 490, 491 |
| ScrFI | CCNGG | 4 cut(s) | 56, 296, 369, 476 |
| SduI | GDGCHC | 5 cut(s) | 286, 322, 494, 599, 718 |
| SexAI | ACCWGGT | 1 cut(s) | 474 |
| SfcI | CTRYAG | 2 cut(s) | 91, 133 |
| SinI | GGWCC | 2 cut(s) | 171, 448 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 683 |
| Sse9I | AATT | 3 cut(s) | 187, 583, 613 |
| SsiI | CCGC | 6 cut(s) | 264, 267, 404, 495, 621, 648 |
| SstI | GAGCTC | 1 cut(s) | 718 |
| StyD4I | CCNGG | 4 cut(s) | 54, 294, 367, 474 |
| TaiI | ACGT | 3 cut(s) | 390, 399, 425 |
| TaqI | TCGA | 1 cut(s) | 384 |
| TasI | AATT | 3 cut(s) | 187, 583, 613 |
| TatI | WGTACW | 1 cut(s) | 570 |
| TauI | GCSGC | 1 cut(s) | 269 |
| TscAI | CASTG | 2 cut(s) | 173, 637 |
| TseI | GCWGC | 4 cut(s) | 83, 93, 135, 461 |
| TspDTI | ATGAA | 1 cut(s) | 5 |
| TspGWI | ACGGA | 2 cut(s) | 430, 457 |
| TspRI | CASTG | 2 cut(s) | 173, 637 |
| Tth111I | GACNNNGTC | 1 cut(s) | 220 |
| VpaK11BI | GGWCC | 2 cut(s) | 171, 448 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 208 |
| ZraI | GACGTC | 1 cut(s) | 397 |