Rroxscaffold_7G00185570

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013370
Physical Location & Seq
Forward (+)
24997077 .. 24997790
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185570.1

Sequence Viewer

Length: 714 bp
ATGGCTTCCTTCTCTGCCTTCCTCCTGATTTTCCTCTCGGCTCTGCTAATCTTACCCTCTCAGTCAGCCGACTGCCCCTCCGCCAAGTTCAAGAACAAGTCCTTCAGCAACTGCACCGCCCTCTCCACCCTCAGCTCCTACCTCCACTATACCTACAACTCCTCCAACTCCTCCCTCGCCGTCGCCTTCATCGCCAAACCTCCCAAGTCCGGCGGCTGGATCGCCTGGGCCATCAACCCCAACTCTACCAAAATGCCCGGCTCTCAAGCCATAGTCGCCTACACCAAAGAAGACGGCACCCCCATGATCAATACCCTCGACATCAAATCCTACAGAGAGCTGATTCCCGGAAAGCTGGCCTTCAACGTCTGGGACACCAGCGCCGAGCTCACCAACGGAACCTTAACGCTCTTCGCCACCGTCAAGGTTCCGGAGAAGGCAGAGACGCTGAACCAGGTCTGGCAGGTGGGCCCTGGAGTCAACCAGTCCAACGGCTTTATCATGAAGCACGAAATGGGCAAGGAAAATCTCGCCGCGTACGGTCTGTTGAGATTCGCCGGCACCGCCAGTACCAACACCACAAACACCACTAGTGGCAGCGCGGCTAGTCCCACGAGTGCTAAGAGTGGAGCGCCCTTGAGGACCGGTGATCGAGGACACGTGGGTTTGTTCTCTATTTTGCTCTTGGTCCTTGGGACTCTTCTTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

237

Amino Acids

25.17

Weight (kDa)

9.34

Isoelectric Point (pI)

22.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 85 - 184 4.1e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 454
Acc36I ACCTGC 1 cut(s) 454
AccB1I GGYRCC 2 cut(s) 296, 560
AccII CGCG 2 cut(s) 536, 602
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 6 cut(s) 81, 117, 213, 534, 564, 602
AclWI GGATC 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 88
AcvI CACGTG 1 cut(s) 661
AfaI GTAC 2 cut(s) 539, 571
AfiI CCNNNNNNNGG 2 cut(s) 209, 216
AflIII ACRYGT 1 cut(s) 658
AgeI ACCGGT 1 cut(s) 644
AgsI TTSAA 2 cut(s) 91, 364
AhlI ACTAGT 1 cut(s) 590
AjnI CCWGG 3 cut(s) 224, 453, 472
AluBI AGCT 4 cut(s) 135, 340, 355, 388
AluI AGCT 4 cut(s) 135, 340, 355, 388
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 437
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 111
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 3 cut(s) 228, 357, 469
ApaI GGGCCC 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 597
AsiGI ACCGGT 1 cut(s) 644
AspLEI GCGC 3 cut(s) 383, 602, 634
AspS9I GGNCC 5 cut(s) 228, 469, 470, 642, 688
AsuC2I CCSGG 2 cut(s) 258, 348
AsuHPI GGTGA 2 cut(s) 382, 659
AvaII GGWCC 2 cut(s) 642, 688
BaeGI GKGCMC 1 cut(s) 473
BanI GGYRCC 2 cut(s) 296, 560
BanII GRGCYC 2 cut(s) 390, 473
BauI CACGAG 1 cut(s) 613
BbrPI CACGTG 1 cut(s) 661
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 1 cut(s) 609
BccI CCATC 1 cut(s) 239
BceAI ACGGC 3 cut(s) 164, 310, 508
BciT130I CCWGG 3 cut(s) 226, 455, 474
BclI TGATCA 1 cut(s) 306
BcnI CCSGG 2 cut(s) 258, 348
BcoDI GTCTC 1 cut(s) 437
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 3 cut(s) 591, 606, 712
BfmI CTRYAG 1 cut(s) 331
BfoI RGCGCY 2 cut(s) 384, 635
BfuAI ACCTGC 1 cut(s) 454
BisI GCNGC 4 cut(s) 214, 534, 598, 603
BlsI GCNGC 4 cut(s) 215, 535, 599, 604
Bme1390I CCNGG 5 cut(s) 226, 258, 348, 455, 474
Bme18I GGWCC 2 cut(s) 642, 688
BmgT120I GGNCC 5 cut(s) 228, 469, 470, 642, 688
BmiI GGNNCC 5 cut(s) 298, 400, 429, 471, 562
BmrFI CCNGG 5 cut(s) 226, 258, 348, 455, 474
BpiI GAAGAC 1 cut(s) 297
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 2 cut(s) 249, 658
BpuMI CCSGG 2 cut(s) 258, 348
BsaAI YACGTR 1 cut(s) 661
BsaJI CCNNGG 3 cut(s) 225, 472, 691
BsaWI WCCGGW 2 cut(s) 430, 644
BsaXI ACNNNNNCTCC 4 cut(s) 62, 92, 146, 176
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 216
Bse118I RCCGGY 2 cut(s) 557, 644
Bse1I ACTGG 2 cut(s) 484, 567
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 3 cut(s) 226, 455, 474
BseDI CCNNGG 3 cut(s) 225, 472, 691
BseLI CCNNNNNNNGG 2 cut(s) 209, 216
BseMII CTCAG 2 cut(s) 74, 145
BseNI ACTGG 2 cut(s) 484, 567
BseRI GAGGAG 2 cut(s) 151, 160
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 536, 602
BshFI GGCC 3 cut(s) 230, 359, 471
BshNI GGYRCC 2 cut(s) 296, 560
BshTI ACCGGT 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 6 cut(s) 210, 258, 348, 431, 558, 645
BsiWI CGTACG 1 cut(s) 537
BslFI GGGAC 3 cut(s) 386, 594, 709
BslI CCNNNNNNNGG 2 cut(s) 209, 216
BsmAI GTCTC 1 cut(s) 437
BsmBI CGTCTC 1 cut(s) 437
BsmFI GGGAC 3 cut(s) 386, 594, 709
BsnI GGCC 3 cut(s) 230, 359, 471
Bsp120I GGGCCC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 390, 473
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 219, 306, 649
BspACI CCGC 6 cut(s) 81, 117, 213, 534, 564, 602
BspANI GGCC 3 cut(s) 230, 359, 471
BspCNI CTCAG 2 cut(s) 73, 144
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 2 cut(s) 536, 602
BspHI TCATGA 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 298, 400, 429, 471, 562
BspMI ACCTGC 1 cut(s) 454
BspPI GGATC 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 416
BspT107I GGYRCC 2 cut(s) 296, 560
BsrFI RCCGGY 2 cut(s) 557, 644
BsrI ACTGG 2 cut(s) 484, 567
BssAI RCCGGY 2 cut(s) 557, 644
BssECI CCNNGG 3 cut(s) 225, 472, 691
BssMI GATC 3 cut(s) 219, 306, 649
BssSI CACGAG 1 cut(s) 613
BssT1I CCWWGG 1 cut(s) 691
Bst2BI CACGAG 1 cut(s) 613
Bst2UI CCWGG 3 cut(s) 226, 455, 474
Bst4CI ACNGT 2 cut(s) 421, 542
Bst6I CTCTTC 2 cut(s) 416, 705
BstBAI YACGTR 1 cut(s) 661
BstC8I GCNNGC 2 cut(s) 357, 559
BstDEI CTNAG 3 cut(s) 60, 131, 621
BstFNI CGCG 2 cut(s) 536, 602
BstH2I RGCGCY 2 cut(s) 384, 635
BstHHI GCGC 3 cut(s) 383, 602, 634
BstKTI GATC 3 cut(s) 222, 309, 652
BstMAI GTCTC 1 cut(s) 437
BstMBI GATC 3 cut(s) 219, 306, 649
BstMWI GCNNNNNNNGC 3 cut(s) 191, 275, 563
BstNI CCWGG 3 cut(s) 226, 455, 474
BstSCI CCNGG 5 cut(s) 224, 256, 346, 453, 472
BstSFI CTRYAG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 473
BstUI CGCG 2 cut(s) 536, 602
BstV1I GCAGC 1 cut(s) 609
BstV2I GAAGAC 1 cut(s) 297
BsuRI GGCC 3 cut(s) 230, 359, 471
BtgZI GCGATG 1 cut(s) 175
BveI ACCTGC 1 cut(s) 454
Cac8I GCNNGC 2 cut(s) 357, 559
CaiI CAGNNNCTG 1 cut(s) 111
CciI TCATGA 1 cut(s) 501
CfoI GCGC 3 cut(s) 383, 602, 634
Cfr10I RCCGGY 2 cut(s) 557, 644
Cfr13I GGNCC 5 cut(s) 228, 469, 470, 642, 688
CseI GACGC 1 cut(s) 454
CsiI ACCWGGT 1 cut(s) 453
Csp6I GTAC 2 cut(s) 538, 570
CspAI ACCGGT 1 cut(s) 644
CviAII CATG 2 cut(s) 304, 502
CviQI GTAC 2 cut(s) 538, 570
DdeI CTNAG 3 cut(s) 60, 131, 621
DpnI GATC 3 cut(s) 221, 308, 651
DpnII GATC 3 cut(s) 219, 306, 649
Eam1104I CTCTTC 2 cut(s) 416, 705
EarI CTCTTC 2 cut(s) 416, 705
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 390, 473
Eco47I GGWCC 2 cut(s) 642, 688
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 88
Eco72I CACGTG 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 3 cut(s) 224, 453, 472
EcoT14I CCWWGG 1 cut(s) 691
EcoT38I GRGCYC 2 cut(s) 390, 473
ErhI CCWWGG 1 cut(s) 691
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 2 cut(s) 307, 505
FaiI YATR 4 cut(s) 150, 272, 305, 503
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 3 cut(s) 386, 594, 709
FatI CATG 2 cut(s) 303, 501
FbaI TGATCA 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 214, 534, 598, 603
FriOI GRGCYC 2 cut(s) 390, 473
Fsp4HI GCNGC 4 cut(s) 214, 534, 598, 603
FspBI CTAG 3 cut(s) 591, 606, 712
GlaI GCGC 3 cut(s) 382, 601, 633
GluI GCNGC 4 cut(s) 214, 534, 598, 603
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 2 cut(s) 384, 635
HaeIII GGCC 3 cut(s) 230, 359, 471
HapII CCGG 6 cut(s) 210, 258, 348, 431, 558, 645
HgaI GACGC 1 cut(s) 454
HhaI GCGC 3 cut(s) 383, 602, 634
Hin1II CATG 2 cut(s) 307, 505
Hin6I GCGC 3 cut(s) 381, 600, 632
HinP1I GCGC 3 cut(s) 381, 600, 632
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HinfI GANTC 4 cut(s) 343, 477, 552, 697
HpaII CCGG 6 cut(s) 210, 258, 348, 431, 558, 645
HphI GGTGA 2 cut(s) 382, 659
Hpy166II GTNNAC 1 cut(s) 481
Hpy188III TCNNGA 4 cut(s) 25, 91, 431, 502
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 6 cut(s) 19, 28, 112, 196, 370, 430
HpyCH4III ACNGT 2 cut(s) 421, 542
HpyCH4IV ACGT 2 cut(s) 366, 660
HpyCH4V TGCA 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 275, 563
HpyF3I CTNAG 3 cut(s) 60, 131, 621
HpySE526I ACGT 2 cut(s) 366, 660
Hsp92II CATG 2 cut(s) 307, 505
HspAI GCGC 3 cut(s) 381, 600, 632
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 557
KroNI GCCGGC 1 cut(s) 559
Ksp22I TGATCA 1 cut(s) 306
Kzo9I GATC 3 cut(s) 219, 306, 649
LguI GCTCTTC 1 cut(s) 416
LmnI GCTCC 2 cut(s) 140, 629
Lsp1109I GCAGC 1 cut(s) 609
MabI ACCWGGT 1 cut(s) 453
MaeI CTAG 3 cut(s) 591, 606, 712
MaeII ACGT 2 cut(s) 366, 660
MalI GATC 3 cut(s) 221, 308, 651
MboI GATC 3 cut(s) 219, 306, 649
MboII GAAGA 3 cut(s) 302, 403, 692
MhlI GDGCHC 2 cut(s) 390, 473
MlyI GAGTC 2 cut(s) 486, 691
MmeI TCCRAC 2 cut(s) 189, 513
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 557
MseI TTAA 1 cut(s) 404
MslI CAYNNNNRTG 1 cut(s) 302
MspI CCGG 6 cut(s) 210, 258, 348, 431, 558, 645
MspR9I CCNGG 5 cut(s) 226, 258, 348, 455, 474
MvaI CCWGG 3 cut(s) 226, 455, 474
MvnI CGCG 2 cut(s) 536, 602
MwoI GCNNNNNNNGC 3 cut(s) 191, 275, 563
NaeI GCCGGC 1 cut(s) 559
NciI CCSGG 2 cut(s) 258, 348
NdeII GATC 3 cut(s) 219, 306, 649
NgoMIV GCCGGC 1 cut(s) 557
NlaIII CATG 2 cut(s) 307, 505
NlaIV GGNNCC 5 cut(s) 298, 400, 429, 471, 562
NmeAIII GCCGAG 2 cut(s) 17, 409
PagI TCATGA 1 cut(s) 501
PaqCI CACCTGC 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 416
PdiI GCCGGC 1 cut(s) 559
PfeI GAWTC 2 cut(s) 343, 552
Pfl23II CGTACG 1 cut(s) 537
PfoI TCCNGGA 1 cut(s) 346
PinAI ACCGGT 1 cut(s) 644
PkrI GCNGC 4 cut(s) 215, 535, 599, 604
PleI GAGTC 2 cut(s) 485, 691
PmaCI CACGTG 1 cut(s) 661
PmlI CACGTG 1 cut(s) 661
PpsI GAGTC 2 cut(s) 485, 691
Ppu21I YACGTR 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 3 cut(s) 224, 453, 472
PspCI CACGTG 1 cut(s) 661
PspGI CCWGG 3 cut(s) 224, 453, 472
PspLI CGTACG 1 cut(s) 537
PspN4I GGNNCC 5 cut(s) 298, 400, 429, 471, 562
PspOMI GGGCCC 1 cut(s) 469
PspPI GGNCC 5 cut(s) 228, 469, 470, 642, 688
PstNI CAGNNNCTG 1 cut(s) 111
RsaI GTAC 2 cut(s) 539, 571
RsaNI GTAC 2 cut(s) 538, 570
RseI CAYNNNNRTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 4 cut(s) 214, 534, 598, 603
Sau3AI GATC 3 cut(s) 219, 306, 649
Sau96I GGNCC 5 cut(s) 228, 469, 470, 642, 688
SchI GAGTC 2 cut(s) 486, 691
ScrFI CCNGG 5 cut(s) 226, 258, 348, 455, 474
SduI GDGCHC 2 cut(s) 390, 473
SexAI ACCWGGT 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 331
SinI GGWCC 2 cut(s) 642, 688
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 2 cut(s) 264, 637
SmoI CTYRAG 2 cut(s) 264, 637
SpeI ACTAGT 1 cut(s) 590
SsiI CCGC 6 cut(s) 81, 117, 213, 534, 564, 602
SspMI CTAG 3 cut(s) 591, 606, 712
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 5 cut(s) 224, 256, 346, 453, 472
StyI CCWWGG 1 cut(s) 691
TaaI ACNGT 2 cut(s) 421, 542
TaiI ACGT 2 cut(s) 369, 663
TaqI TCGA 2 cut(s) 318, 652
TauI GCSGC 3 cut(s) 216, 536, 605
TfiI GAWTC 2 cut(s) 343, 552
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseI GCWGC 1 cut(s) 597
TspDTI ATGAA 2 cut(s) 178, 518
TspGWI ACGGA 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 642, 688
XspI CTAG 3 cut(s) 591, 606, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.