Prupe.8G192700_v2.0.a1

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013370
Physical Location & Seq
Reverse (-)
18651621 .. 18652697
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G192700.1

Sequence Viewer

Length: 750 bp
ATGGCTTCCTCTCTTCATCCCGTTCTTCTTGTCTCAGTCTCGTGGATCTCCCTCCTGGCTCTGCTAATCTCACCCGCGCAAGCAGCCACCTGCACCTCACAGACATTCAAGAAAAACAAGCTCTACGCCCACTGCAGCGACCTCCCCTTCCTCAGCTCCTACCTCCACTGGACCTACAATGCCTCCAACTCCTCTCTCTCCGTCGCCTTCGTGGCGAAGCCGGCCAAATCTGACGGCTGGGTCGCGTGGGCCATCAACCCCACCGAGACCAAGATGGCTGGGGCCCAGACCCTCTTAGCCTACAAGACCGAGAACGGGGCACCAGCCGTCAACACATTGAACATCTCCTCGTACAGCTCCATCGTGCCGGGAAAACTCTCGTTCGAAGTCTGGGACGTCAGCGCGGAGTTTTCCAACGACACCTTCACGATCTTCGCCACCGTCAAGGTCCCGAAGGACGCGGCATCAGTGAACCAGGTCTGGCAGGTGGGCTCCGCCGTCAACAAGACCTCCGGTTTCCCCGAGAAGCATGACGTCGCCCCACCCAATCTCAAGTCGTTTGGCACCTTGTCCTTGGGGGCCAATTCCACTACTACCACAAATTCCACTACGGGCACTCCCGCTGGTACTAATACCACTACCAATAGCACTGGTGGTGGTGGTAGCGGAGCCTTGAGGATTGGGAGTGGAGGAAACATGGGATTGTTCTCTGTTTCGCTTTTGGTTCTTGGAGCTCTCATTGCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

250

Amino Acids

25.81

Weight (kDa)

8.85

Isoelectric Point (pI)

27.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 98, 475
AasI GACNNNNNNGTC 1 cut(s) 239
AatII GACGTC 2 cut(s) 399, 537
Acc36I ACCTGC 2 cut(s) 98, 475
AccB1I GGYRCC 2 cut(s) 319, 563
AccII CGCG 4 cut(s) 77, 245, 404, 461
AciI CCGC 6 cut(s) 75, 404, 461, 495, 621, 666
AclWI GGATC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 601
AcyI GRCGYC 2 cut(s) 396, 534
AfaI GTAC 2 cut(s) 353, 628
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 2 cut(s) 109, 340
AjnI CCWGG 2 cut(s) 54, 474
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 4 cut(s) 121, 156, 357, 734
AluI AGCT 4 cut(s) 121, 156, 357, 734
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 3 cut(s) 37, 43, 260
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 521
AoxI GGCC 4 cut(s) 222, 249, 282, 579
ApaI GGGCCC 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 83, 135
ApoI RAATTY 1 cut(s) 601
AspLEI GCGC 2 cut(s) 79, 404
AspS9I GGNCC 6 cut(s) 171, 249, 282, 283, 448, 579
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 63
AsuII TTCGAA 1 cut(s) 384
AvaI CYCGRG 1 cut(s) 521
AvaII GGWCC 2 cut(s) 171, 448
BaeGI GKGCMC 3 cut(s) 286, 322, 617
BanI GGYRCC 2 cut(s) 319, 563
BanII GRGCYC 3 cut(s) 286, 494, 736
BauI CACGAG 1 cut(s) 40
Bbv12I GWGCWC 1 cut(s) 736
BbvCI CCTCAGC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 95, 147
BccI CCATC 3 cut(s) 260, 268, 368
BceAI ACGGC 3 cut(s) 250, 311, 482
BciT130I CCWGG 2 cut(s) 56, 476
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 3 cut(s) 37, 43, 260
BfmI CTRYAG 1 cut(s) 133
BfuAI ACCTGC 2 cut(s) 98, 475
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 3 cut(s) 84, 136, 462
BlsI GCNGC 3 cut(s) 85, 137, 463
Bme1390I CCNGG 3 cut(s) 56, 369, 476
Bme18I GGWCC 2 cut(s) 171, 448
BmeT110I CYCGRG 1 cut(s) 521
BmgT120I GGNCC 6 cut(s) 171, 249, 282, 283, 448, 579
BmiI GGNNCC 8 cut(s) 283, 284, 321, 450, 493, 565, 580, 670
BmrFI CCNGG 3 cut(s) 56, 369, 476
BmsI GCATC 1 cut(s) 473
Bpu10I CCTNAGC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 384
BpuEI CTTGAG 2 cut(s) 536, 694
BpuMI CCSGG 1 cut(s) 369
BsaHI GRCGYC 2 cut(s) 396, 534
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 573
BsaWI WCCGGW 1 cut(s) 512
BsaXI ACNNNNNCTCC 6 cut(s) 167, 197, 494, 524, 601, 631
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse118I RCCGGY 1 cut(s) 220
Bse1I ACTGG 2 cut(s) 173, 655
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 2 cut(s) 56, 476
BseDI CCNNGG 1 cut(s) 573
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 48, 166
BseNI ACTGG 2 cut(s) 173, 655
BseRI GAGGAG 2 cut(s) 181, 337
BseSI GKGCMC 3 cut(s) 286, 322, 617
BseXI GCAGC 2 cut(s) 95, 147
BseYI CCCAGC 2 cut(s) 237, 278
BsgI GTGCAG 1 cut(s) 76
Bsh1236I CGCG 4 cut(s) 77, 245, 404, 461
BshFI GGCC 4 cut(s) 224, 251, 284, 581
BshNI GGYRCC 2 cut(s) 319, 563
BsiHKAI GWGCWC 1 cut(s) 736
BsiHKCI CYCGRG 1 cut(s) 521
BsiSI CCGG 3 cut(s) 221, 368, 513
BslFI GGGAC 2 cut(s) 407, 434
BslI CCNNNNNNNGG 1 cut(s) 315
BsmAI GTCTC 3 cut(s) 37, 43, 260
BsmFI GGGAC 2 cut(s) 407, 434
BsnI GGCC 4 cut(s) 224, 251, 284, 581
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 521
Bsp119I TTCGAA 1 cut(s) 384
Bsp120I GGGCCC 1 cut(s) 282
Bsp1286I GDGCHC 5 cut(s) 286, 322, 494, 617, 736
Bsp143I GATC 2 cut(s) 45, 429
BspACI CCGC 6 cut(s) 75, 404, 461, 495, 621, 666
BspANI GGCC 4 cut(s) 224, 251, 284, 581
BspCNI CTCAG 2 cut(s) 47, 165
BspFNI CGCG 4 cut(s) 77, 245, 404, 461
BspLI GGNNCC 8 cut(s) 283, 284, 321, 450, 493, 565, 580, 670
BspMAI CTGCAG 1 cut(s) 137
BspMI ACCTGC 2 cut(s) 98, 475
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 384
BspT107I GGYRCC 2 cut(s) 319, 563
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 738
BsrFI RCCGGY 1 cut(s) 220
BsrI ACTGG 2 cut(s) 173, 655
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 573
BssMI GATC 2 cut(s) 45, 429
BssNI GRCGYC 2 cut(s) 396, 534
BssSI CACGAG 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 1 cut(s) 40
Bst2UI CCWGG 2 cut(s) 56, 476
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 2 cut(s) 396, 534
BstBI TTCGAA 1 cut(s) 384
BstC8I GCNNGC 2 cut(s) 81, 222
BstDEI CTNAG 3 cut(s) 34, 152, 295
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 4 cut(s) 77, 245, 404, 461
BstHHI GCGC 2 cut(s) 79, 404
BstKTI GATC 2 cut(s) 48, 432
BstMAI GTCTC 3 cut(s) 37, 43, 260
BstMBI GATC 2 cut(s) 45, 429
BstMWI GCNNNNNNNGC 4 cut(s) 83, 212, 221, 740
BstNI CCWGG 2 cut(s) 56, 476
BstSCI CCNGG 3 cut(s) 54, 367, 474
BstSFI CTRYAG 1 cut(s) 133
BstSLI GKGCMC 3 cut(s) 286, 322, 617
BstUI CGCG 4 cut(s) 77, 245, 404, 461
BstV1I GCAGC 2 cut(s) 95, 147
BstX2I RGATCY 1 cut(s) 45
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 4 cut(s) 224, 251, 284, 581
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 4 cut(s) 130, 166, 474, 648
BveI ACCTGC 2 cut(s) 98, 475
Cac8I GCNNGC 2 cut(s) 81, 222
CfoI GCGC 2 cut(s) 79, 404
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 6 cut(s) 171, 249, 282, 283, 448, 579
CseI GACGC 1 cut(s) 467
CsiI ACCWGGT 1 cut(s) 474
Csp6I GTAC 2 cut(s) 352, 627
CviAII CATG 2 cut(s) 530, 697
CviQI GTAC 2 cut(s) 352, 627
DdeI CTNAG 3 cut(s) 34, 152, 295
DpnI GATC 2 cut(s) 47, 431
DpnII GATC 2 cut(s) 45, 429
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 1 cut(s) 484
Ecl136II GAGCTC 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 3 cut(s) 286, 494, 736
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 171, 448
Eco53kI GAGCTC 1 cut(s) 734
Eco88I CYCGRG 1 cut(s) 521
EcoICRI GAGCTC 1 cut(s) 734
EcoO109I RGGNCCY 2 cut(s) 282, 448
EcoRII CCWGG 2 cut(s) 54, 474
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 3 cut(s) 286, 494, 736
ErhI CCWWGG 1 cut(s) 573
FaeI CATG 2 cut(s) 533, 700
FaiI YATR 2 cut(s) 531, 698
FaqI GGGAC 2 cut(s) 407, 434
FatI CATG 2 cut(s) 529, 696
FauI CCCGC 2 cut(s) 82, 628
Fnu4HI GCNGC 3 cut(s) 84, 136, 462
FokI GGATG 1 cut(s) 3
FriOI GRGCYC 3 cut(s) 286, 494, 736
Fsp4HI GCNGC 3 cut(s) 84, 136, 462
GlaI GCGC 2 cut(s) 78, 403
GluI GCNGC 3 cut(s) 84, 136, 462
GsaI CCCAGC 2 cut(s) 241, 282
HaeIII GGCC 4 cut(s) 224, 251, 284, 581
HapII CCGG 3 cut(s) 221, 368, 513
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 79, 404
Hin1I GRCGYC 2 cut(s) 396, 534
Hin1II CATG 2 cut(s) 533, 700
Hin6I GCGC 2 cut(s) 77, 402
HinP1I GCGC 2 cut(s) 77, 402
HincII GTYRAC 2 cut(s) 331, 502
HindII GTYRAC 2 cut(s) 331, 502
HpaII CCGG 3 cut(s) 221, 368, 513
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 3 cut(s) 331, 472, 502
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 109, 427, 451
Hpy8I GTNNAC 3 cut(s) 331, 472, 502
Hpy99I CGWCG 2 cut(s) 206, 539
HpyAV CCTTC 4 cut(s) 157, 217, 433, 448
HpyCH4III ACNGT 1 cut(s) 442
HpyCH4IV ACGT 2 cut(s) 396, 534
HpyCH4V TGCA 2 cut(s) 93, 135
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 212, 221, 740
HpyF3I CTNAG 3 cut(s) 34, 152, 295
HpySE526I ACGT 2 cut(s) 396, 534
Hsp92I GRCGYC 2 cut(s) 396, 534
Hsp92II CATG 2 cut(s) 533, 700
HspAI GCGC 2 cut(s) 77, 402
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 2 cut(s) 45, 429
LmnI GCTCC 5 cut(s) 161, 362, 497, 668, 731
Lsp1109I GCAGC 2 cut(s) 95, 147
LweI GCATC 1 cut(s) 473
MabI ACCWGGT 1 cut(s) 474
MaeII ACGT 2 cut(s) 396, 534
MalI GATC 2 cut(s) 47, 431
MboI GATC 2 cut(s) 45, 429
MboII GAAGA 3 cut(s) 5, 17, 424
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 5 cut(s) 286, 322, 494, 617, 736
MluCI AATT 2 cut(s) 583, 601
MmeI TCCRAC 2 cut(s) 210, 438
MroNI GCCGGC 1 cut(s) 220
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 3 cut(s) 221, 368, 513
MspR9I CCNGG 3 cut(s) 56, 369, 476
MvaI CCWGG 2 cut(s) 56, 476
MvnI CGCG 4 cut(s) 77, 245, 404, 461
MwoI GCNNNNNNNGC 4 cut(s) 83, 212, 221, 740
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 1 cut(s) 369
NdeII GATC 2 cut(s) 45, 429
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 2 cut(s) 533, 700
NlaIV GGNNCC 8 cut(s) 283, 284, 321, 450, 493, 565, 580, 670
NspV TTCGAA 1 cut(s) 384
PaqCI CACCTGC 2 cut(s) 98, 475
PdiI GCCGGC 1 cut(s) 222
PkrI GCNGC 3 cut(s) 85, 137, 463
PpuMI RGGWCCY 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 448
Psp6I CCWGG 2 cut(s) 54, 474
PspFI CCCAGC 2 cut(s) 237, 278
PspGI CCWGG 2 cut(s) 54, 474
PspN4I GGNNCC 8 cut(s) 283, 284, 321, 450, 493, 565, 580, 670
PspOMI GGGCCC 1 cut(s) 282
PspPI GGNCC 6 cut(s) 171, 249, 282, 283, 448, 579
PspPPI RGGWCCY 1 cut(s) 448
PstI CTGCAG 1 cut(s) 137
PsuI RGATCY 1 cut(s) 45
RsaI GTAC 2 cut(s) 353, 628
RsaNI GTAC 2 cut(s) 352, 627
SacI GAGCTC 1 cut(s) 736
SatI GCNGC 3 cut(s) 84, 136, 462
Sau3AI GATC 2 cut(s) 45, 429
Sau96I GGNCC 6 cut(s) 171, 249, 282, 283, 448, 579
ScrFI CCNGG 3 cut(s) 56, 369, 476
SduI GDGCHC 5 cut(s) 286, 322, 494, 617, 736
SexAI ACCWGGT 1 cut(s) 474
SfaNI GCATC 1 cut(s) 473
SfcI CTRYAG 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 384
SinI GGWCC 2 cut(s) 171, 448
SmlI CTYRAG 2 cut(s) 551, 673
SmoI CTYRAG 2 cut(s) 551, 673
Sse9I AATT 2 cut(s) 583, 601
SsiI CCGC 6 cut(s) 75, 404, 461, 495, 621, 666
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 54, 367, 474
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 1 cut(s) 442
TaiI ACGT 2 cut(s) 399, 537
TaqI TCGA 1 cut(s) 384
TaqII GACCGA 1 cut(s) 323
TasI AATT 2 cut(s) 583, 601
TauI GCSGC 1 cut(s) 464
TscAI CASTG 4 cut(s) 137, 173, 474, 655
TseI GCWGC 2 cut(s) 83, 135
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 4 cut(s) 137, 173, 474, 655
VpaK11BI GGWCC 2 cut(s) 171, 448
XapI RAATTY 1 cut(s) 601
ZraI GACGTC 2 cut(s) 397, 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.