MD10G1153800.v1.1

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013370
Physical Location & Seq
Reverse (-)
24145354 .. 24146121
768 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1153800.v1.1.491

Sequence Viewer

Length: 768 bp
ATGGCTTCCTCTCTCCCTCTCTCTCTCCTCCAAACTGCATGCATTTCCCTCCTATGCGCTCTGCTAATCTCACCCGCCGCACAAGCAGCCACCTGCACCTCACAGACATTCAAAAACAAGAAGCTCTACTCCAACTGCACAGATCTGCCCGTTCTCAGTTCCTACCTCCACTGGACGTACGACCCCTCCAACTCCTCCCTCTCCGTTGTCTTCATCGCCGCCGCCCCCAAGCCCGATGGCTGGGTCGCCTGGGCTATCAACCCCACGTCCGAAAAAATGGCCGGGGCCCAGACCCTAATGGCCCACAAAACAACCGACGGTACCCCAACTGTCAAAACCTACAACATCAGCACCTACACCTCCATCGTCCCAGGAAAGCTCTCGTTCGACGTCTGGGACGTCAGCGCCGAGTTCTCCAACGGTACGTACAAGATATTCGCCACCGTCAAGGTCCCGAAAAACGCGGAGTCCGTCAACCAGGTCTGGCAGGTGGGTCCCGGCGTCGACAAAACCACTGGTTTCCCCCAAAAGCATGAGTTCGTCGGCTCTAATCTCGTGTCCTTTGGCACTTTGCACTTGGTTGCTAATGCCACTACTGGCACCACTAACTCCACTACCGGCACTACCAACTCCACAATGGGCGGTGCCTCCACCACTAACACCACTGGTGGCAGTGGTAGTGGTGGGGCTTTGAGGATTGGGAGTGGAGGAAACATGGGTTTGTTTTCCATTTCGCTTTTGGTTCTTGGAGCCCTCATTGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

256

Amino Acids

26.5

Weight (kDa)

8.65

Isoelectric Point (pI)

24.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 93 - 193 1.4e-28 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 101, 478
AatII GACGTC 2 cut(s) 393, 402
Acc36I ACCTGC 2 cut(s) 101, 478
Acc65I GGTACC 1 cut(s) 320
AccB1I GGYRCC 3 cut(s) 320, 599, 644
AccI GTMKAC 1 cut(s) 504
AccII CGCG 1 cut(s) 464
AciI CCGC 6 cut(s) 75, 78, 219, 222, 464, 642
AcoI YGGCCR 1 cut(s) 279
AcyI GRCGYC 3 cut(s) 390, 399, 501
AfaI GTAC 4 cut(s) 179, 322, 424, 428
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 1 cut(s) 112
AjiI CACGTC 1 cut(s) 267
AjnI CCWGG 3 cut(s) 248, 370, 477
AluBI AGCT 2 cut(s) 124, 379
AluI AGCT 2 cut(s) 124, 379
AoxI GGCC 3 cut(s) 279, 285, 300
ApaI GGGCCC 1 cut(s) 289
ApeKI GCWGC 1 cut(s) 86
Asp718I GGTACC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 59, 407
AspS9I GGNCC 5 cut(s) 285, 286, 301, 451, 494
AsuC2I CCSGG 2 cut(s) 283, 498
AsuHPI GGTGA 1 cut(s) 63
AvaII GGWCC 2 cut(s) 451, 494
BaeGI GKGCMC 1 cut(s) 289
BanI GGYRCC 3 cut(s) 320, 599, 644
BanII GRGCYC 2 cut(s) 289, 754
BauI CACGAG 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 202
BbvI GCAGC 1 cut(s) 98
BccI CCATC 2 cut(s) 230, 371
BciT130I CCWGG 3 cut(s) 250, 372, 479
BcnI CCSGG 2 cut(s) 283, 498
BfoI RGCGCY 1 cut(s) 408
BfuAI ACCTGC 2 cut(s) 101, 478
BglII AGATCT 1 cut(s) 142
BisI GCNGC 4 cut(s) 78, 87, 219, 222
BlsI GCNGC 4 cut(s) 79, 88, 220, 223
Bme1390I CCNGG 5 cut(s) 250, 283, 372, 479, 498
Bme18I GGWCC 2 cut(s) 451, 494
BmgBI CACGTC 1 cut(s) 267
BmgT120I GGNCC 5 cut(s) 285, 286, 301, 451, 494
BmiI GGNNCC 9 cut(s) 286, 287, 322, 453, 495, 496, 601, 646, 751
BmrFI CCNGG 5 cut(s) 250, 283, 372, 479, 498
BpiI GAAGAC 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 283, 498
BsaAI YACGTR 1 cut(s) 426
BsaHI GRCGYC 3 cut(s) 390, 399, 501
BsaJI CCNNGG 3 cut(s) 249, 282, 370
BsaXI ACNNNNNCTCC 2 cut(s) 170, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 617
Bse1I ACTGG 4 cut(s) 176, 520, 601, 670
BseBI CCWGG 3 cut(s) 250, 372, 479
BseDI CCNNGG 3 cut(s) 249, 282, 370
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 169
BseNI ACTGG 4 cut(s) 176, 520, 601, 670
BseRI GAGGAG 2 cut(s) 17, 184
BseSI GKGCMC 1 cut(s) 289
BseXI GCAGC 1 cut(s) 98
BseYI CCCAGC 1 cut(s) 240
BsgI GTGCAG 2 cut(s) 79, 121
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 3 cut(s) 281, 287, 302
BshNI GGYRCC 3 cut(s) 320, 599, 644
BsiSI CCGG 3 cut(s) 282, 498, 618
BsiWI CGTACG 1 cut(s) 177
BslFI GGGAC 4 cut(s) 353, 410, 437, 480
BslI CCNNNNNNNGG 1 cut(s) 240
BsmFI GGGAC 4 cut(s) 353, 410, 437, 480
BsnI GGCC 3 cut(s) 281, 287, 302
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 289, 754
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 6 cut(s) 75, 78, 219, 222, 464, 642
BspANI GGCC 3 cut(s) 281, 287, 302
BspCNI CTCAG 1 cut(s) 168
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 9 cut(s) 286, 287, 322, 453, 495, 496, 601, 646, 751
BspMI ACCTGC 2 cut(s) 101, 478
BspT107I GGYRCC 3 cut(s) 320, 599, 644
BsrFI RCCGGY 1 cut(s) 617
BsrI ACTGG 4 cut(s) 176, 520, 601, 670
BssAI RCCGGY 1 cut(s) 617
BssECI CCNNGG 3 cut(s) 249, 282, 370
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 3 cut(s) 390, 399, 501
BssSI CACGAG 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 554
Bst2UI CCWGG 3 cut(s) 250, 372, 479
Bst4CI ACNGT 4 cut(s) 320, 331, 422, 445
BstACI GRCGYC 3 cut(s) 390, 399, 501
BstBAI YACGTR 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 40
BstDEI CTNAG 1 cut(s) 155
BstFNI CGCG 1 cut(s) 464
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 2 cut(s) 59, 407
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 2 cut(s) 83, 86
BstNI CCWGG 3 cut(s) 250, 372, 479
BstNSI RCATGY 1 cut(s) 42
BstSCI CCNGG 5 cut(s) 248, 281, 370, 477, 496
BstSLI GKGCMC 1 cut(s) 289
BstSNI TACGTA 1 cut(s) 426
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 98
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 3 cut(s) 281, 287, 302
BtgZI GCGATG 1 cut(s) 199
BtrI CACGTC 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 679
BtsIMutI CAGTG 4 cut(s) 169, 513, 663, 679
BveI ACCTGC 2 cut(s) 101, 478
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 2 cut(s) 59, 407
Cfr10I RCCGGY 1 cut(s) 617
Cfr13I GGNCC 5 cut(s) 285, 286, 301, 451, 494
CseI GACGC 1 cut(s) 490
CsiI ACCWGGT 1 cut(s) 477
Csp6I GTAC 4 cut(s) 178, 321, 423, 427
CviAII CATG 3 cut(s) 39, 533, 715
CviQI GTAC 4 cut(s) 178, 321, 423, 427
DdeI CTNAG 1 cut(s) 155
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
EaeI YGGCCR 1 cut(s) 279
Eco105I TACGTA 1 cut(s) 426
Eco24I GRGCYC 2 cut(s) 289, 754
Eco47I GGWCC 2 cut(s) 451, 494
EcoO109I RGGNCCY 3 cut(s) 285, 451, 494
EcoRII CCWGG 3 cut(s) 248, 370, 477
EcoT22I ATGCAT 1 cut(s) 44
EcoT38I GRGCYC 2 cut(s) 289, 754
FaeI CATG 3 cut(s) 42, 536, 718
FaiI YATR 4 cut(s) 40, 55, 534, 716
FaqI GGGAC 4 cut(s) 353, 410, 437, 480
FatI CATG 3 cut(s) 38, 532, 714
FauI CCCGC 1 cut(s) 82
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 4 cut(s) 78, 87, 219, 222
FriOI GRGCYC 2 cut(s) 289, 754
Fsp4HI GCNGC 4 cut(s) 78, 87, 219, 222
GlaI GCGC 2 cut(s) 58, 406
GluI GCNGC 4 cut(s) 78, 87, 219, 222
GsaI CCCAGC 1 cut(s) 244
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 3 cut(s) 281, 287, 302
HapII CCGG 3 cut(s) 282, 498, 618
HgaI GACGC 1 cut(s) 490
HhaI GCGC 2 cut(s) 59, 407
Hin1I GRCGYC 3 cut(s) 390, 399, 501
Hin1II CATG 3 cut(s) 42, 536, 718
Hin6I GCGC 2 cut(s) 57, 405
HinP1I GCGC 2 cut(s) 57, 405
HincII GTYRAC 2 cut(s) 475, 505
HindII GTYRAC 2 cut(s) 475, 505
HinfI GANTC 1 cut(s) 467
HpaII CCGG 3 cut(s) 282, 498, 618
HphI GGTGA 1 cut(s) 63
Hpy166II GTNNAC 2 cut(s) 475, 505
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 475, 505
Hpy99I CGWCG 4 cut(s) 320, 392, 506, 545
HpyCH4III ACNGT 4 cut(s) 320, 331, 422, 445
HpyCH4IV ACGT 5 cut(s) 176, 266, 390, 399, 425
HpyCH4V TGCA 5 cut(s) 38, 42, 96, 138, 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 86
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 5 cut(s) 176, 266, 390, 399, 425
Hsp92I GRCGYC 3 cut(s) 390, 399, 501
Hsp92II CATG 3 cut(s) 42, 536, 718
HspAI GCGC 2 cut(s) 57, 405
KflI GGGWCCC 1 cut(s) 494
KpnI GGTACC 1 cut(s) 324
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 749
Lsp1109I GCAGC 1 cut(s) 98
MabI ACCWGGT 1 cut(s) 477
MaeII ACGT 5 cut(s) 176, 266, 390, 399, 425
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 1 cut(s) 202
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 289, 754
MlyI GAGTC 1 cut(s) 476
MmeI TCCRAC 3 cut(s) 156, 213, 441
Mph1103I ATGCAT 1 cut(s) 44
MspI CCGG 3 cut(s) 282, 498, 618
MspR9I CCNGG 5 cut(s) 250, 283, 372, 479, 498
MvaI CCWGG 3 cut(s) 250, 372, 479
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 83, 86
NciI CCSGG 2 cut(s) 283, 498
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 42, 536, 718
NlaIV GGNNCC 9 cut(s) 286, 287, 322, 453, 495, 496, 601, 646, 751
NmeAIII GCCGAG 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 42
PaeI GCATGC 1 cut(s) 42
PaqCI CACCTGC 2 cut(s) 101, 478
PcsI WCGNNNNNNNCGW 3 cut(s) 396, 405, 468
Pfl23II CGTACG 1 cut(s) 177
PkrI GCNGC 4 cut(s) 79, 88, 220, 223
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
Ppu21I YACGTR 1 cut(s) 426
PpuMI RGGWCCY 2 cut(s) 451, 494
Psp5II RGGWCCY 2 cut(s) 451, 494
Psp6I CCWGG 3 cut(s) 248, 370, 477
PspFI CCCAGC 1 cut(s) 240
PspGI CCWGG 3 cut(s) 248, 370, 477
PspLI CGTACG 1 cut(s) 177
PspN4I GGNNCC 9 cut(s) 286, 287, 322, 453, 495, 496, 601, 646, 751
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 5 cut(s) 285, 286, 301, 451, 494
PspPPI RGGWCCY 2 cut(s) 451, 494
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 4 cut(s) 179, 322, 424, 428
RsaNI GTAC 4 cut(s) 178, 321, 423, 427
SalI GTCGAC 1 cut(s) 503
SatI GCNGC 4 cut(s) 78, 87, 219, 222
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 5 cut(s) 285, 286, 301, 451, 494
SchI GAGTC 1 cut(s) 476
ScrFI CCNGG 5 cut(s) 250, 283, 372, 479, 498
SduI GDGCHC 2 cut(s) 289, 754
SexAI ACCWGGT 1 cut(s) 477
SinI GGWCC 2 cut(s) 451, 494
SnaBI TACGTA 1 cut(s) 426
SphI GCATGC 1 cut(s) 42
SsiI CCGC 6 cut(s) 75, 78, 219, 222, 464, 642
StyD4I CCNGG 5 cut(s) 248, 281, 370, 477, 496
TaaI ACNGT 4 cut(s) 320, 331, 422, 445
TaiI ACGT 5 cut(s) 179, 269, 393, 402, 428
TaqI TCGA 2 cut(s) 387, 504
TauI GCSGC 3 cut(s) 80, 221, 224
TscAI CASTG 4 cut(s) 176, 520, 670, 679
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 1 cut(s) 202
TspGWI ACGGA 2 cut(s) 193, 460
TspRI CASTG 4 cut(s) 176, 520, 670, 679
VpaK11BI GGWCC 2 cut(s) 451, 494
XceI RCATGY 1 cut(s) 42
XcmI CCANNNNNNNNNTGG 2 cut(s) 634, 736
XmiI GTMKAC 1 cut(s) 504
ZraI GACGTC 2 cut(s) 391, 400
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.