RLG00000012831

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013370
Physical Location & Seq
Forward (+)
22817925 .. 22818641
717 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012831

Sequence Viewer

Length: 717 bp
ATGGCTTCCTTCTCTCCCTTCCTCCTGATCTCCCTCTCGGCTCTGCTAATCTTACCCTCTCAGTCAGCCGACTGCCCCTCCGCCAAGTTCAAGAACAACAAGTCCTTCAGCAACTGTACCCCCCTCTCCACCCTCAGCTCCTACCTCCACTATACCTACGACGCCTCCAACTCCTCCCTCTCCGTCGCCTTCATCGCCAAACCTCCCAAGTCCGGCGGCTGGATCGCCTGGGCCATCAACCCCAACAGCACCAAAATGCCCGGCGCTCAAGCCATAGTCGCCTACACCAAAGAAGACGGCACCCCCATGATCAAAACCCTCAACATCAAATCCTACAAAGAACTGATTCCCGGAAAGCTCGCCTTCGACGTCTGGGACACCGGCGCCGAGCTCACCGACGGAAACTTAACGCTCTTCGCCACCGTCAAGGTTCCGGAGAAGGCAGAGACGCTGAACCAGGTCTGGCAGGTAGGCCCTGGAGTCAACCAGTCCAACGGCTTTATCATGATTCACGAAATGGGCAAGGAAAACCTCAACGCGTACGGTCCCTTGAGATTGGCCGGCACCGTCAGTACCAACACCACAAACACCACTAGTGGCAGCGCGGCTAGTCCAACGAGTGCTAAGAGTGGAGCGCCCTTGAGGATTCGTGATGGAGGACACGTGGGTTTGTTCTCTATTTTGCTCTTGGTCCTTGGGACTCTTCTTGTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF568

Protein Analysis

239

Amino Acids

25.25

Weight (kDa)

9.02

Isoelectric Point (pI)

30.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 86 - 185 4.9e-24 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013370)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07390 AT3G07390
fragaria_vesca FvH4_2g18001
malus_domestica MD05G1164300.v1.1 MD10G1153800.v1.1
prunus_persica Prupe.7G210500_v2.0.a1 Prupe.8G192600_v2.0.a1 Prupe.8G192700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0283381
rosa_laevigata RLG00000012831
rosa_multiflora Rmu_sc0003166.1_g000009
rosa_roxburghii Rroxscaffold_7G00185570
rosa_rugosa Rorug06G0153500
rosa_samantha Rh6AG266000 Rh6BG268600 Rh6CG268300 Rh6DG261800
rosa_wichuraiana Rw6G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
Acc36I ACCTGC 1 cut(s) 457
AccB1I GGYRCC 3 cut(s) 299, 383, 563
AccII CGCG 2 cut(s) 539, 605
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 3 cut(s) 81, 216, 605
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 558
AcuI CTGAAG 1 cut(s) 91
AcvI CACGTG 1 cut(s) 664
AcyI GRCGYC 3 cut(s) 162, 369, 384
AfaI GTAC 3 cut(s) 118, 542, 574
AfiI CCNNNNNNNGG 2 cut(s) 212, 219
AflIII ACRYGT 2 cut(s) 537, 661
AgsI TTSAA 1 cut(s) 91
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 3 cut(s) 227, 456, 475
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 138, 358, 391
AluI AGCT 3 cut(s) 138, 358, 391
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 114
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 3 cut(s) 231, 472, 558
ApeKI GCWGC 1 cut(s) 600
Asp700I GAANNNNTTC 1 cut(s) 345
AspLEI GCGC 4 cut(s) 266, 386, 605, 637
AspS9I GGNCC 4 cut(s) 231, 473, 545, 691
AsuC2I CCSGG 2 cut(s) 261, 351
AsuHPI GGTGA 1 cut(s) 385
AvaII GGWCC 2 cut(s) 545, 691
BanI GGYRCC 3 cut(s) 299, 383, 563
BanII GRGCYC 1 cut(s) 393
BbrPI CACGTG 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 393
BbvCI CCTCAGC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 612
BccI CCATC 2 cut(s) 242, 647
BceAI ACGGC 2 cut(s) 313, 511
BciT130I CCWGG 3 cut(s) 229, 458, 477
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 261, 351
BcoDI GTCTC 1 cut(s) 440
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 3 cut(s) 594, 609, 715
BfoI RGCGCY 3 cut(s) 267, 387, 638
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 3 cut(s) 217, 601, 606
BlsI GCNGC 3 cut(s) 218, 602, 607
Bme1390I CCNGG 5 cut(s) 229, 261, 351, 458, 477
Bme18I GGWCC 2 cut(s) 545, 691
BmgT120I GGNCC 4 cut(s) 231, 473, 545, 691
BmiI GGNNCC 5 cut(s) 301, 385, 432, 547, 565
BmrFI CCNGG 5 cut(s) 229, 261, 351, 458, 477
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 134
BpuEI CTTGAG 3 cut(s) 252, 571, 661
BpuMI CCSGG 2 cut(s) 261, 351
BsaAI YACGTR 1 cut(s) 664
BsaHI GRCGYC 3 cut(s) 162, 369, 384
BsaJI CCNNGG 3 cut(s) 228, 475, 694
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 6 cut(s) 62, 92, 149, 179, 648, 678
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 219
Bse118I RCCGGY 2 cut(s) 380, 560
Bse1I ACTGG 1 cut(s) 487
BseAI TCCGGA 1 cut(s) 433
BseBI CCWGG 3 cut(s) 229, 458, 477
BseDI CCNNGG 3 cut(s) 228, 475, 694
BseLI CCNNNNNNNGG 2 cut(s) 212, 219
BseMII CTCAG 2 cut(s) 74, 148
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 612
Bsh1236I CGCG 2 cut(s) 539, 605
BshFI GGCC 3 cut(s) 233, 474, 560
BshNI GGYRCC 3 cut(s) 299, 383, 563
BsiHKAI GWGCWC 1 cut(s) 393
BsiSI CCGG 6 cut(s) 213, 261, 351, 381, 434, 561
BsiWI CGTACG 1 cut(s) 540
BslFI GGGAC 3 cut(s) 389, 531, 712
BslI CCNNNNNNNGG 2 cut(s) 212, 219
BsmAI GTCTC 1 cut(s) 440
BsmBI CGTCTC 1 cut(s) 440
BsmFI GGGAC 3 cut(s) 389, 531, 712
BsnI GGCC 3 cut(s) 233, 474, 560
Bsp1286I GDGCHC 1 cut(s) 393
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 3 cut(s) 27, 222, 309
BspACI CCGC 3 cut(s) 81, 216, 605
BspANI GGCC 3 cut(s) 233, 474, 560
BspCNI CTCAG 2 cut(s) 73, 147
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 2 cut(s) 539, 605
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 5 cut(s) 301, 385, 432, 547, 565
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 419
BspT107I GGYRCC 3 cut(s) 299, 383, 563
BsrFI RCCGGY 2 cut(s) 380, 560
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 2 cut(s) 380, 560
BssECI CCNNGG 3 cut(s) 228, 475, 694
BssMI GATC 3 cut(s) 27, 222, 309
BssNI GRCGYC 3 cut(s) 162, 369, 384
BssT1I CCWWGG 1 cut(s) 694
Bst2UI CCWGG 3 cut(s) 229, 458, 477
Bst4CI ACNGT 4 cut(s) 116, 424, 545, 568
Bst6I CTCTTC 2 cut(s) 419, 708
BstACI GRCGYC 3 cut(s) 162, 369, 384
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 2 cut(s) 360, 562
BstDEI CTNAG 3 cut(s) 60, 134, 624
BstFNI CGCG 2 cut(s) 539, 605
BstH2I RGCGCY 3 cut(s) 267, 387, 638
BstHHI GCGC 4 cut(s) 266, 386, 605, 637
BstKTI GATC 3 cut(s) 30, 225, 312
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 27, 222, 309
BstMWI GCNNNNNNNGC 2 cut(s) 194, 278
BstNI CCWGG 3 cut(s) 229, 458, 477
BstSCI CCNGG 5 cut(s) 227, 259, 349, 456, 475
BstUI CGCG 2 cut(s) 539, 605
BstV1I GCAGC 1 cut(s) 612
BstV2I GAAGAC 1 cut(s) 300
BsuRI GGCC 3 cut(s) 233, 474, 560
BtgZI GCGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 360, 562
CaiI CAGNNNCTG 1 cut(s) 114
CciI TCATGA 1 cut(s) 504
CfoI GCGC 4 cut(s) 266, 386, 605, 637
Cfr10I RCCGGY 2 cut(s) 380, 560
Cfr13I GGNCC 4 cut(s) 231, 473, 545, 691
CseI GACGC 2 cut(s) 170, 457
CsiI ACCWGGT 1 cut(s) 456
Csp6I GTAC 3 cut(s) 117, 541, 573
CviAII CATG 2 cut(s) 307, 505
CviQI GTAC 3 cut(s) 117, 541, 573
DdeI CTNAG 3 cut(s) 60, 134, 624
DinI GGCGCC 1 cut(s) 385
DpnI GATC 3 cut(s) 29, 224, 311
DpnII GATC 3 cut(s) 27, 222, 309
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 419, 708
EarI CTCTTC 2 cut(s) 419, 708
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 694
Eco24I GRGCYC 1 cut(s) 393
Eco47I GGWCC 2 cut(s) 545, 691
Eco53kI GAGCTC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 3 cut(s) 227, 456, 475
EcoT14I CCWWGG 1 cut(s) 694
EcoT38I GRGCYC 1 cut(s) 393
EgeI GGCGCC 1 cut(s) 385
EheI GGCGCC 1 cut(s) 385
ErhI CCWWGG 1 cut(s) 694
Esp3I CGTCTC 1 cut(s) 440
FaeI CATG 2 cut(s) 310, 508
FaiI YATR 4 cut(s) 153, 275, 308, 506
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 389, 531, 712
FatI CATG 2 cut(s) 306, 504
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 217, 601, 606
FriOI GRGCYC 1 cut(s) 393
Fsp4HI GCNGC 3 cut(s) 217, 601, 606
FspBI CTAG 3 cut(s) 594, 609, 715
GlaI GCGC 4 cut(s) 265, 385, 604, 636
GluI GCNGC 3 cut(s) 217, 601, 606
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 3 cut(s) 267, 387, 638
HaeIII GGCC 3 cut(s) 233, 474, 560
HapII CCGG 6 cut(s) 213, 261, 351, 381, 434, 561
HgaI GACGC 2 cut(s) 170, 457
HhaI GCGC 4 cut(s) 266, 386, 605, 637
Hin1I GRCGYC 3 cut(s) 162, 369, 384
Hin1II CATG 2 cut(s) 310, 508
Hin6I GCGC 4 cut(s) 264, 384, 603, 635
HinP1I GCGC 4 cut(s) 264, 384, 603, 635
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 5 cut(s) 346, 480, 508, 646, 700
HpaII CCGG 6 cut(s) 213, 261, 351, 381, 434, 561
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 484
Hpy188III TCNNGA 6 cut(s) 25, 91, 434, 505, 512, 650
Hpy8I GTNNAC 1 cut(s) 484
Hpy99I CGWCG 4 cut(s) 164, 188, 371, 401
HpyAV CCTTC 6 cut(s) 19, 28, 115, 199, 373, 433
HpyCH4III ACNGT 4 cut(s) 116, 424, 545, 568
HpyCH4IV ACGT 2 cut(s) 369, 663
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 278
HpyF3I CTNAG 3 cut(s) 60, 134, 624
HpySE526I ACGT 2 cut(s) 369, 663
Hsp92I GRCGYC 3 cut(s) 162, 369, 384
Hsp92II CATG 2 cut(s) 310, 508
HspAI GCGC 4 cut(s) 264, 384, 603, 635
KasI GGCGCC 1 cut(s) 383
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 1 cut(s) 560
KroNI GCCGGC 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 27, 222, 309
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 2 cut(s) 143, 632
Lsp1109I GCAGC 1 cut(s) 612
MabI ACCWGGT 1 cut(s) 456
MaeI CTAG 3 cut(s) 594, 609, 715
MaeII ACGT 2 cut(s) 369, 663
MalI GATC 3 cut(s) 29, 224, 311
MboI GATC 3 cut(s) 27, 222, 309
MboII GAAGA 3 cut(s) 305, 406, 695
MhlI GDGCHC 1 cut(s) 393
MluI ACGCGT 1 cut(s) 537
Mly113I GGCGCC 1 cut(s) 384
MlyI GAGTC 2 cut(s) 489, 694
MmeI TCCRAC 3 cut(s) 192, 516, 638
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 560
MroXI GAANNNNTTC 1 cut(s) 345
MseI TTAA 1 cut(s) 407
MslI CAYNNNNRTG 2 cut(s) 254, 305
MspI CCGG 6 cut(s) 213, 261, 351, 381, 434, 561
MspR9I CCNGG 5 cut(s) 229, 261, 351, 458, 477
MvaI CCWGG 3 cut(s) 229, 458, 477
MvnI CGCG 2 cut(s) 539, 605
MwoI GCNNNNNNNGC 2 cut(s) 194, 278
NaeI GCCGGC 1 cut(s) 562
NarI GGCGCC 1 cut(s) 384
NciI CCSGG 2 cut(s) 261, 351
NdeII GATC 3 cut(s) 27, 222, 309
NgoMIV GCCGGC 1 cut(s) 560
NlaIII CATG 2 cut(s) 310, 508
NlaIV GGNNCC 5 cut(s) 301, 385, 432, 547, 565
NmeAIII GCCGAG 2 cut(s) 17, 412
PagI TCATGA 1 cut(s) 504
PciSI GCTCTTC 1 cut(s) 419
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PdiI GCCGGC 1 cut(s) 562
PdmI GAANNNNTTC 1 cut(s) 345
PfeI GAWTC 3 cut(s) 346, 508, 646
Pfl23II CGTACG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 3 cut(s) 218, 602, 607
PleI GAGTC 2 cut(s) 488, 694
PluTI GGCGCC 1 cut(s) 387
PmaCI CACGTG 1 cut(s) 664
PmlI CACGTG 1 cut(s) 664
PpsI GAGTC 2 cut(s) 488, 694
Ppu21I YACGTR 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 393
Psp6I CCWGG 3 cut(s) 227, 456, 475
PspCI CACGTG 1 cut(s) 664
PspGI CCWGG 3 cut(s) 227, 456, 475
PspLI CGTACG 1 cut(s) 540
PspN4I GGNNCC 5 cut(s) 301, 385, 432, 547, 565
PspPI GGNCC 4 cut(s) 231, 473, 545, 691
PstNI CAGNNNCTG 1 cut(s) 114
RsaI GTAC 3 cut(s) 118, 542, 574
RsaNI GTAC 3 cut(s) 117, 541, 573
RseI CAYNNNNRTG 2 cut(s) 254, 305
SacI GAGCTC 1 cut(s) 393
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 1 cut(s) 407
SatI GCNGC 3 cut(s) 217, 601, 606
Sau3AI GATC 3 cut(s) 27, 222, 309
Sau96I GGNCC 4 cut(s) 231, 473, 545, 691
SchI GAGTC 2 cut(s) 489, 694
ScrFI CCNGG 5 cut(s) 229, 261, 351, 458, 477
SduI GDGCHC 1 cut(s) 393
SexAI ACCWGGT 1 cut(s) 456
SfoI GGCGCC 1 cut(s) 385
SgrAI CRCCGGYG 1 cut(s) 380
SinI GGWCC 2 cut(s) 545, 691
SmiMI CAYNNNNRTG 2 cut(s) 254, 305
SmlI CTYRAG 3 cut(s) 267, 550, 640
SmoI CTYRAG 3 cut(s) 267, 550, 640
SpeI ACTAGT 1 cut(s) 593
SsiI CCGC 3 cut(s) 81, 216, 605
SspDI GGCGCC 1 cut(s) 383
SspMI CTAG 3 cut(s) 594, 609, 715
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 5 cut(s) 227, 259, 349, 456, 475
StyI CCWWGG 1 cut(s) 694
TaaI ACNGT 4 cut(s) 116, 424, 545, 568
TaiI ACGT 2 cut(s) 372, 666
TaqI TCGA 1 cut(s) 366
TauI GCSGC 2 cut(s) 219, 608
TfiI GAWTC 3 cut(s) 346, 508, 646
Tru1I TTAA 1 cut(s) 407
Tru9I TTAA 1 cut(s) 407
TseI GCWGC 1 cut(s) 600
TspDTI ATGAA 1 cut(s) 181
TspGWI ACGGA 2 cut(s) 172, 414
VpaK11BI GGWCC 2 cut(s) 545, 691
XmnI GAANNNNTTC 1 cut(s) 345
XspI CTAG 3 cut(s) 594, 609, 715
ZraI GACGTC 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.