Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Reverse (-)

2398951 .. 2400603

Gene Structure 1653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07525.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGATTCAGCTCGAGAGGTCAGCGATGGTAGACTCACCGTCGAAGGTTTCTCTGTAGCTTCTCGAGCTTTTGCCGATAAGTGGAAGATACATAACCAATCGTTCCCTCCATGGTCTTGGGTTCCTCTGATCAATCGAACTCTACTTGTTTCAAAGAAGGAGGAAGGTTACTTGTCGCTGGAGAAGATCATAATTCTCAGTTCACTTGAGGAGGAAATTCCAGAGGATGAATCTCTAAATGTAGCTACTGATTGCTTGGAAAAAGAAGAAACAGTTGATCACACGATTTTGGTCCCAACCATGGAAAATGAAGCACACTACTATGATTTCCATATAGTTTACAGTGCATCATACAAGGTTCCTGTGCTATATTTTCGCGGATACTGCAGCGGTGGAGAACCTCTTGCTTTGGATGTCATAAAAAAAGATGTACCCTCATGCTCTGTTAGTCTTTTGCTGGAATCTAAGTGGACTTTTATAACTCAAGAGGAGCATCCATATTTGAACAGGCCATGGTTCAAGCTACATCCCTGTGGGACTGAGGACTGGATCAAGCTGCTTTCCCAAAGTAGCAGCTCTTCTGGATGTCAGATGCCAATTGTGTTGTACTTGGTTTCATGGTTCTCTGTTGTCGGGCAGGTGGTTGGTCTTAGGATCCCTCTTGAGATGCTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

225

Amino Acids

25.62

Weight (kDa)

4.92

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	20 - 221	2.1e-43	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	479
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	628
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	1 cut(s)	378
AciI	CCGC	2 cut(s)	378, 390
AclWI	GGATC	3 cut(s)	557, 649, 662
AcsI	RAATTY	1 cut(s)	216
AfaI	GTAC	2 cut(s)	432, 608
AfiI	CCNNNNNNNGG	2 cut(s)	81, 301
AgsI	TTSAA	3 cut(s)	153, 505, 520
AhdI	GACNNNNNGTC	1 cut(s)	38
AluBI	AGCT	7 cut(s)	11, 59, 68, 245, 523, 556, 576
AluI	AGCT	7 cut(s)	11, 59, 68, 245, 523, 556, 576
AlwI	GGATC	3 cut(s)	557, 649, 662
Ama87I	CYCGRG	2 cut(s)	12, 63
AoxI	GGCC	1 cut(s)	509
ApeKI	GCWGC	3 cut(s)	387, 556, 573
ApoI	RAATTY	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	28
AvaI	CYCGRG	2 cut(s)	12, 63
AvaII	GGWCC	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	654
BarI	GAAGNNNNNNTAC	2 cut(s)	562, 594
BbvI	GCAGC	3 cut(s)	399, 543, 585
BccI	CCATC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	2 cut(s)	129, 277
BfmI	CTRYAG	2 cut(s)	54, 385
BfuAI	ACCTGC	1 cut(s)	628
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	388, 557, 574
BlsI	GCNGC	3 cut(s)	389, 558, 575
Bme18I	GGWCC	1 cut(s)	292
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmeT110I	CYCGRG	2 cut(s)	12, 63
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	4 cut(s)	123, 294, 360, 656
BmsI	GCATC	4 cut(s)	356, 502, 582, 657
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	2 cut(s)	227, 468
BsaJI	CCNNGG	3 cut(s)	110, 300, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 301
Bse1I	ACTGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	110, 300, 512
BseGI	GGATG	5 cut(s)	232, 418, 493, 526, 590
BseLI	CCNNNNNNNGG	2 cut(s)	81, 301
BseMII	CTCAG	2 cut(s)	211, 531
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	2 cut(s)	224, 503
BseXI	GCAGC	3 cut(s)	399, 543, 585
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	511
BsiHKCI	CYCGRG	2 cut(s)	12, 63
BslFI	GGGAC	2 cut(s)	278, 550
BslI	CCNNNNNNNGG	2 cut(s)	81, 301
BsmFI	GGGAC	2 cut(s)	278, 550
BsnI	GGCC	1 cut(s)	511
BsoBI	CYCGRG	2 cut(s)	12, 63
Bsp143I	GATC	5 cut(s)	129, 186, 277, 549, 654
Bsp19I	CCATGG	3 cut(s)	110, 300, 512
BspACI	CCGC	2 cut(s)	378, 390
BspANI	GGCC	1 cut(s)	511
BspCNI	CTCAG	2 cut(s)	210, 532
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	4 cut(s)	123, 294, 360, 656
BspMAI	CTGCAG	1 cut(s)	389
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	3 cut(s)	557, 649, 662
BspQI	GCTCTTC	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	110, 300, 512
BssMI	GATC	5 cut(s)	129, 186, 277, 549, 654
BssT1I	CCWWGG	3 cut(s)	110, 300, 512
Bst4CI	ACNGT	3 cut(s)	40, 274, 344
Bst6I	CTCTTC	1 cut(s)	583
BstDEI	CTNAG	4 cut(s)	197, 465, 540, 650
BstDSI	CCRYGG	3 cut(s)	110, 300, 512
BstF5I	GGATG	5 cut(s)	232, 418, 493, 526, 590
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	5 cut(s)	132, 189, 280, 552, 657
BstMBI	GATC	5 cut(s)	129, 186, 277, 549, 654
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 384
BstSFI	CTRYAG	2 cut(s)	54, 385
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	399, 543, 585
BstX2I	RGATCY	1 cut(s)	654
BstXI	CCANNNNNNTGG	1 cut(s)	117
BstYI	RGATCY	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	1 cut(s)	511
BtgI	CCRYGG	3 cut(s)	110, 300, 512
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	5 cut(s)	232, 418, 493, 526, 590
BtsIMutI	CAGTG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	431, 607
CviAII	CATG	5 cut(s)	111, 301, 438, 513, 618
CviJI	RGCY	8 cut(s)	11, 59, 68, 245, 511, 523, 556, 576
CviKI_1	RGCY	8 cut(s)	11, 59, 68, 245, 511, 523, 556, 576
CviQI	GTAC	2 cut(s)	431, 607
DdeI	CTNAG	4 cut(s)	197, 465, 540, 650
DpnI	GATC	5 cut(s)	131, 188, 279, 551, 656
DpnII	GATC	5 cut(s)	129, 186, 277, 549, 654
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	583
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	583
Eco130I	CCWWGG	3 cut(s)	110, 300, 512
Eco47I	GGWCC	1 cut(s)	292
Eco88I	CYCGRG	2 cut(s)	12, 63
EcoT14I	CCWWGG	3 cut(s)	110, 300, 512
ErhI	CCWWGG	3 cut(s)	110, 300, 512
FaeI	CATG	5 cut(s)	114, 304, 441, 516, 621
FaqI	GGGAC	2 cut(s)	278, 550
FatI	CATG	5 cut(s)	110, 300, 437, 512, 617
FbaI	TGATCA	2 cut(s)	129, 277
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	388, 557, 574
FokI	GGATG	5 cut(s)	239, 425, 480, 513, 597
Fsp4HI	GCNGC	3 cut(s)	388, 557, 574
GluI	GCNGC	3 cut(s)	388, 557, 574
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	511
Hin1II	CATG	5 cut(s)	114, 304, 441, 516, 621
HinfI	GANTC	4 cut(s)	5, 33, 230, 461
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	4 cut(s)	32, 203, 340, 471
Hpy188I	TCNGA	2 cut(s)	129, 591
Hpy188III	TCNNGA	6 cut(s)	14, 63, 221, 485, 582, 662
Hpy8I	GTNNAC	4 cut(s)	32, 203, 340, 471
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	3 cut(s)	38, 151, 158
HpyCH4III	ACNGT	3 cut(s)	40, 274, 344
HpyCH4V	TGCA	2 cut(s)	347, 387
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 384
HpyF3I	CTNAG	4 cut(s)	197, 465, 540, 650
Hsp92II	CATG	5 cut(s)	114, 304, 441, 516, 621
Ksp22I	TGATCA	2 cut(s)	129, 277
Kzo9I	GATC	5 cut(s)	129, 186, 277, 549, 654
LguI	GCTCTTC	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	9 cut(s)	164, 234, 375, 443, 493, 532, 544, 567, 623
Lsp1109I	GCAGC	3 cut(s)	399, 543, 585
LweI	GCATC	4 cut(s)	356, 502, 582, 657
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	5 cut(s)	131, 188, 279, 551, 656
MboI	GATC	5 cut(s)	129, 186, 277, 549, 654
MboII	GAAGA	4 cut(s)	97, 196, 278, 570
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	1 cut(s)	654
MluCI	AATT	4 cut(s)	192, 216, 597, 673
MlyI	GAGTC	1 cut(s)	27
MslI	CAYNNNNRTG	2 cut(s)	321, 531
MspA1I	CMGCKG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	65, 384
NcoI	CCATGG	3 cut(s)	110, 300, 512
NdeII	GATC	5 cut(s)	129, 186, 277, 549, 654
NlaIII	CATG	5 cut(s)	114, 304, 441, 516, 621
NlaIV	GGNNCC	4 cut(s)	123, 294, 360, 656
PaeR7I	CTCGAG	2 cut(s)	12, 63
PaqCI	CACCTGC	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	583
PfeI	GAWTC	3 cut(s)	5, 230, 461
PkrI	GCNGC	3 cut(s)	389, 558, 575
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
PsiI	TTATAA	1 cut(s)	479
PspN4I	GGNNCC	4 cut(s)	123, 294, 360, 656
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	654
RsaI	GTAC	2 cut(s)	432, 608
RsaNI	GTAC	2 cut(s)	431, 607
RseI	CAYNNNNRTG	2 cut(s)	321, 531
SapI	GCTCTTC	1 cut(s)	583
SatI	GCNGC	3 cut(s)	388, 557, 574
Sau3AI	GATC	5 cut(s)	129, 186, 277, 549, 654
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	27
SfaNI	GCATC	4 cut(s)	356, 502, 582, 657
SfcI	CTRYAG	2 cut(s)	54, 385
Sfr274I	CTCGAG	2 cut(s)	12, 63
SinI	GGWCC	1 cut(s)	292
SlaI	CTCGAG	2 cut(s)	12, 63
SmiMI	CAYNNNNRTG	2 cut(s)	321, 531
SmlI	CTYRAG	5 cut(s)	12, 63, 206, 483, 662
SmoI	CTYRAG	5 cut(s)	12, 63, 206, 483, 662
Sse9I	AATT	4 cut(s)	192, 216, 597, 673
SsiI	CCGC	2 cut(s)	378, 390
StyI	CCWWGG	3 cut(s)	110, 300, 512
TaaI	ACNGT	3 cut(s)	40, 274, 344
TaqI	TCGA	4 cut(s)	13, 42, 64, 136
TasI	AATT	4 cut(s)	192, 216, 597, 673
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	3 cut(s)	5, 230, 461
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	3 cut(s)	387, 556, 573
TspDTI	ATGAA	3 cut(s)	243, 324, 606
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	216
XhoI	CTCGAG	2 cut(s)	12, 63
XmiI	GTMKAC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.