Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011940.1

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

37758 .. 38737

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011940.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggatgttttgtcatgggatggaaccctctcgtcacgtgacttccaggttgcagcacgtgcttttgcagagaactggaagcaattcaaccctgccttgcctccatggacgtgggttccttgtcttaaacagccttctcgtctctctcaagagcagggctacttgtcattggagaagatatgccttcttggatcaaacaaggaacatgagcaggaagctgtagttgaagaagagcctgagcctgttgataatgccactcttgttgagagcgctggtcctcaggtgtgttactatgatttccatatagtatacagtgattcgtatcgggttcctgtcctgtattttcgtgggtactacattgatggacagcctttggcttgggatgagattgaaaaagacttacctgcatgctcatcaaaggtgctgctggaatcgaaatggacattcattactcaggaggagcatccgcacttgaacaggccatggtacaagctgcatccatgtgggactagtgagtggatgaagctgctttttcttggtgatgaatccctggctacgaatggagtagcggttgagcaatatttggtgtcatggctctcagttgttggtcaagtagttggtcttagaatcccttttgacatgttgaatcaccataaaagttgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

222

Amino Acids

25.5

Weight (kDa)

4.89

Isoelectric Point (pI)

47.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	2 cut(s)	467, 569
AclWI	GGATC	1 cut(s)	199
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	2 cut(s)	353, 488
AfeI	AGCGCT	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	88, 227, 392, 475, 646
AhlI	ACTAGT	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	45, 549
AluBI	AGCT	3 cut(s)	218, 493, 526
AluI	AGCT	3 cut(s)	218, 493, 526
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	271
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	4 cut(s)	53, 424, 493, 526
Asp700I	GAANNNNTTC	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	551, 641
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	279
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	4 cut(s)	65, 411, 480, 513
BccI	CCATC	2 cut(s)	14, 356
BciT130I	CCWGG	2 cut(s)	47, 551
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	54, 425, 494, 527
BlsI	GCNGC	4 cut(s)	55, 426, 495, 528
Bme1390I	CCNGG	2 cut(s)	47, 551
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	25, 117, 330
BmrFI	CCNGG	2 cut(s)	47, 551
BmsI	GCATC	2 cut(s)	472, 505
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	104, 482, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	47, 551
BseDI	CCNNGG	3 cut(s)	104, 482, 549
BseGI	GGATG	6 cut(s)	10, 25, 388, 463, 496, 525
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	228, 293, 467, 612
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	473
BseXI	GCAGC	4 cut(s)	65, 411, 480, 513
BshFI	GGCC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	2 cut(s)	104, 482
BspACI	CCGC	2 cut(s)	467, 569
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	4 cut(s)	229, 292, 466, 611
BspLI	GGNNCC	3 cut(s)	25, 117, 330
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	104, 482, 549
BssMI	GATC	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	310
BssT1I	CCWWGG	2 cut(s)	104, 482
Bst1107I	GTATAC	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	47, 551
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	237, 279, 453, 598, 623
BstDSI	CCRYGG	2 cut(s)	104, 482
BstF5I	GGATG	6 cut(s)	10, 25, 388, 463, 496, 525
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	47, 551
BstNSI	RCATGY	2 cut(s)	411, 643
BstSCI	CCNGG	2 cut(s)	45, 549
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	4 cut(s)	65, 411, 480, 513
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	2 cut(s)	104, 482
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	6 cut(s)	10, 25, 388, 463, 496, 525
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	409
CfoI	GCGC	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	352, 487
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	8 cut(s)	15, 105, 206, 408, 483, 501, 591, 640
CviQI	GTAC	2 cut(s)	352, 487
DdeI	CTNAG	5 cut(s)	237, 279, 453, 598, 623
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	104, 482
Eco47I	GGWCC	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	271
Eco72I	CACGTG	2 cut(s)	38, 59
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	45, 549
EcoT14I	CCWWGG	2 cut(s)	104, 482
ErhI	CCWWGG	2 cut(s)	104, 482
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	8 cut(s)	18, 108, 209, 411, 486, 504, 594, 643
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	8 cut(s)	14, 104, 205, 407, 482, 500, 590, 639
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	54, 425, 494, 527
FokI	GGATG	6 cut(s)	17, 32, 395, 450, 483, 532
Fsp4HI	GCNGC	4 cut(s)	54, 425, 494, 527
FspBI	CTAG	1 cut(s)	510
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	4 cut(s)	54, 425, 494, 527
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	481
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	8 cut(s)	18, 108, 209, 411, 486, 504, 594, 643
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	317, 431, 545, 627, 646
HphI	GGTGA	2 cut(s)	551, 641
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	149, 455
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	144, 194
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	3 cut(s)	37, 58, 110
HpyCH4V	TGCA	4 cut(s)	53, 68, 407, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	5 cut(s)	237, 279, 453, 598, 623
HpySE526I	ACGT	3 cut(s)	37, 58, 110
Hsp92II	CATG	8 cut(s)	18, 108, 209, 411, 486, 504, 594, 643
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	4 cut(s)	65, 411, 480, 513
LweI	GCATC	2 cut(s)	472, 505
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	3 cut(s)	37, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 287
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	187, 239, 242
MluCI	AATT	2 cut(s)	83, 664
MnlI	CCTC	4 cut(s)	38, 111, 288, 451
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	109, 501
MspR9I	CCNGG	2 cut(s)	47, 551
MvaI	CCWGG	2 cut(s)	47, 551
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 482
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	8 cut(s)	18, 108, 209, 411, 486, 504, 594, 643
NlaIV	GGNNCC	3 cut(s)	25, 117, 330
NmuCI	GTSAC	2 cut(s)	33, 38
NspI	RCATGY	2 cut(s)	411, 643
PaeI	GCATGC	1 cut(s)	411
PciI	ACATGT	1 cut(s)	639
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	317, 431, 545, 627, 646
PkrI	GCNGC	4 cut(s)	55, 426, 495, 528
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
PscI	ACATGT	1 cut(s)	639
Psp6I	CCWGG	2 cut(s)	45, 549
PspCI	CACGTG	2 cut(s)	38, 59
PspGI	CCWGG	2 cut(s)	45, 549
PspN4I	GGNNCC	3 cut(s)	25, 117, 330
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	353, 488
RsaNI	GTAC	2 cut(s)	352, 487
RseI	CAYNNNNRTG	2 cut(s)	109, 501
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	4 cut(s)	54, 425, 494, 527
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	47, 551
SfaNI	GCATC	2 cut(s)	472, 505
SfcI	CTRYAG	1 cut(s)	219
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	109, 501
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	509
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	2 cut(s)	83, 664
SsiI	CCGC	2 cut(s)	467, 569
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	45, 549
StyI	CCWWGG	2 cut(s)	104, 482
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	3 cut(s)	40, 61, 113
TaqI	TCGA	1 cut(s)	434
TasI	AATT	2 cut(s)	83, 664
TfiI	GAWTC	5 cut(s)	317, 431, 545, 627, 646
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	4 cut(s)	53, 424, 493, 526
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	3 cut(s)	436, 536, 558
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	2 cut(s)	411, 643
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.