Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

28441581 .. 28443466

Gene Structure 1886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1153700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAGGTTTTGGGATGGGATGGAGCCCTCTCGTCACGTGACTTCCACGTCGCGGCACGTGCTTTTGCCAACAACTGGAAAGAATTTAACTCGGCCTTTCCTCCATGGACGTGGGTTCCCTCTCCCAAACAGCCTCCTCATCTCTCCCGCCTGCAGCAGCAGCAGCATGGCTACTTATCGTTGGAGAAGATTTGCCTTCTTAGGTCAATCAAGGAAGATGCTAATGAAGAGAATCACGCTTGGGACGAAGAGGAGCCCGAGTCTGTTGATAAGGCCACGCTGGTTGACACCAGCAATCTTCAAGTATGCTACTACGATTTTCATATAGTATACAGTGATTCATATCGAGTTCCCGTGCTGTATTTTCGTTGTTACTACATCGATGGACAGCCTTTGGCATTGGAAGAAATAGAAAAGGACCTACCTGCTCGCTCATCAAAGGTTTTACTGGAATCAAAATGGACATTTATAACTCAGGAGGAGCATCCTTACTTGAACAGACCGTGGTACAAGCTGCATCCATGTGGAACCAGCGAGTGGATGAAGCTGCTTTTCCTTGGTGATAATTCTCAGGCTAAAAATGGAGTGGCAGTTGAACAATATTTGGTGTCTTGGCTCTCAGTTGTAGGTCAAGTGGTTGGTATTAGAGTCCCTTTTGAAATGTTGAATCATCATAAAACTAGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

230

Amino Acids

26.63

Weight (kDa)

5.46

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	22 - 218	9.2e-48	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	433
AccB7I	CCANNNNNTGG	2 cut(s)	75, 537
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	53
AciI	CCGC	2 cut(s)	53, 148
AcsI	RAATTY	1 cut(s)	83
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	52, 75, 537
AgsI	TTSAA	5 cut(s)	302, 496, 596, 659, 667
AhlI	ACTAGT	1 cut(s)	680
AjiI	CACGTC	2 cut(s)	49, 111
AluBI	AGCT	2 cut(s)	514, 547
AluI	AGCT	2 cut(s)	514, 547
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	93, 273
ApeKI	GCWGC	6 cut(s)	154, 157, 160, 163, 514, 547
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	572
AvaI	CYCGRG	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	418
BanII	GRGCYC	2 cut(s)	28, 258
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	6 cut(s)	166, 169, 172, 175, 501, 534
BccI	CCATC	3 cut(s)	9, 14, 377
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	1 cut(s)	681
BfmI	CTRYAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	7 cut(s)	54, 155, 158, 161, 164, 515, 548
BlsI	GCNGC	7 cut(s)	55, 156, 159, 162, 165, 516, 549
Bme18I	GGWCC	1 cut(s)	418
BmeT110I	CYCGRG	1 cut(s)	257
BmgBI	CACGTC	2 cut(s)	49, 111
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	4 cut(s)	25, 117, 255, 529
BmsI	GCATC	3 cut(s)	208, 493, 526
Bsa29I	ATCGAT	1 cut(s)	381
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	104, 503, 556
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 75, 537
Bse1I	ACTGG	2 cut(s)	80, 453
Bse8I	GATNNNNATC	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	104, 503, 556
BseGI	GGATG	5 cut(s)	20, 25, 484, 517, 546
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	3 cut(s)	52, 75, 537
BseMII	CTCAG	3 cut(s)	488, 584, 633
BseNI	ACTGG	2 cut(s)	80, 453
BseRI	GAGGAG	3 cut(s)	126, 266, 494
BseXI	GCAGC	6 cut(s)	166, 169, 172, 175, 501, 534
Bsh1236I	CGCG	1 cut(s)	53
BshFI	GGCC	2 cut(s)	95, 275
BshVI	ATCGAT	1 cut(s)	381
BsiHKCI	CYCGRG	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	257, 635
BslI	CCNNNNNNNGG	3 cut(s)	52, 75, 537
BsmFI	GGGAC	2 cut(s)	257, 635
BsnI	GGCC	2 cut(s)	95, 275
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	28, 258
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	2 cut(s)	53, 148
BspANI	GGCC	2 cut(s)	95, 275
BspCNI	CTCAG	3 cut(s)	487, 583, 632
BspDI	ATCGAT	1 cut(s)	381
BspFNI	CGCG	1 cut(s)	53
BspLI	GGNNCC	4 cut(s)	25, 117, 255, 529
BspMAI	CTGCAG	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	433
BsrI	ACTGG	2 cut(s)	80, 453
BssECI	CCNNGG	3 cut(s)	104, 503, 556
BssNAI	GTATAC	1 cut(s)	331
BssT1I	CCWWGG	2 cut(s)	104, 556
Bst1107I	GTATAC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	335, 504
Bst6I	CTCTTC	2 cut(s)	222, 243
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	2 cut(s)	152, 430
BstDEI	CTNAG	4 cut(s)	200, 474, 570, 619
BstDSI	CCRYGG	2 cut(s)	104, 503
BstF5I	GGATG	5 cut(s)	20, 25, 484, 517, 546
BstFNI	CGCG	1 cut(s)	53
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 160, 163
BstSFI	CTRYAG	1 cut(s)	152
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	6 cut(s)	166, 169, 172, 175, 501, 534
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	95, 275
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	2 cut(s)	104, 503
BtrI	CACGTC	2 cut(s)	49, 111
BtsCI	GGATG	5 cut(s)	20, 25, 484, 517, 546
BtsIMutI	CAGTG	1 cut(s)	340
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	152, 430
Cfr13I	GGNCC	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	381
Csp6I	GTAC	1 cut(s)	508
CspCI	CAANNNNNGTGG	2 cut(s)	265, 300
CviAII	CATG	3 cut(s)	105, 167, 522
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	4 cut(s)	200, 474, 570, 619
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	222, 243
EarI	CTCTTC	2 cut(s)	222, 243
Eco130I	CCWWGG	2 cut(s)	104, 556
Eco24I	GRGCYC	2 cut(s)	28, 258
Eco47I	GGWCC	1 cut(s)	418
Eco72I	CACGTG	2 cut(s)	38, 59
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	418
EcoT14I	CCWWGG	2 cut(s)	104, 556
EcoT38I	GRGCYC	2 cut(s)	28, 258
ErhI	CCWWGG	2 cut(s)	104, 556
FaeI	CATG	3 cut(s)	108, 170, 525
FaqI	GGGAC	2 cut(s)	257, 635
FatI	CATG	3 cut(s)	104, 166, 521
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	7 cut(s)	54, 155, 158, 161, 164, 515, 548
FokI	GGATG	5 cut(s)	27, 32, 471, 504, 553
FriOI	GRGCYC	2 cut(s)	28, 258
Fsp4HI	GCNGC	7 cut(s)	54, 155, 158, 161, 164, 515, 548
FspBI	CTAG	1 cut(s)	681
GluI	GCNGC	7 cut(s)	54, 155, 158, 161, 164, 515, 548
HaeIII	GGCC	2 cut(s)	95, 275
Hin1II	CATG	3 cut(s)	108, 170, 525
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	6 cut(s)	232, 260, 338, 452, 648, 667
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	286, 331
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	2 cut(s)	286, 331
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	335, 504
HpyCH4IV	ACGT	4 cut(s)	37, 48, 58, 110
HpyCH4V	TGCA	2 cut(s)	154, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 160, 163
HpyF3I	CTNAG	4 cut(s)	200, 474, 570, 619
HpySE526I	ACGT	4 cut(s)	37, 48, 58, 110
Hsp92II	CATG	3 cut(s)	108, 170, 525
LmnI	GCTCC	3 cut(s)	23, 253, 481
LpnPI	CCDG	9 cut(s)	61, 164, 266, 304, 434, 438, 461, 544, 557
Lsp1109I	GCAGC	6 cut(s)	166, 169, 172, 175, 501, 534
LweI	GCATC	3 cut(s)	208, 493, 526
MaeI	CTAG	1 cut(s)	681
MaeII	ACGT	4 cut(s)	37, 48, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 371
MboII	GAAGA	6 cut(s)	199, 227, 239, 260, 290, 416
MhlI	GDGCHC	2 cut(s)	28, 258
MluCI	AATT	3 cut(s)	83, 565, 685
MlyI	GAGTC	2 cut(s)	269, 657
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	7 cut(s)	38, 111, 130, 144, 147, 244, 472
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	2 cut(s)	109, 522
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	59, 160, 163
NcoI	CCATGG	1 cut(s)	104
NlaIII	CATG	3 cut(s)	108, 170, 525
NlaIV	GGNNCC	4 cut(s)	25, 117, 255, 529
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	33, 38
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	232, 338, 452, 667
PflMI	CCANNNNNTGG	2 cut(s)	75, 537
PkrI	GCNGC	7 cut(s)	55, 156, 159, 162, 165, 516, 549
PleI	GAGTC	2 cut(s)	268, 656
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
PpsI	GAGTC	2 cut(s)	268, 656
Ppu21I	YACGTR	2 cut(s)	38, 59
PpuMI	RGGWCCY	1 cut(s)	418
PsiI	TTATAA	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	418
PspCI	CACGTG	2 cut(s)	38, 59
PspN4I	GGNNCC	4 cut(s)	25, 117, 255, 529
PspPI	GGNCC	1 cut(s)	418
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	156
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
RseI	CAYNNNNRTG	2 cut(s)	109, 522
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	7 cut(s)	54, 155, 158, 161, 164, 515, 548
Sau96I	GGNCC	1 cut(s)	418
SchI	GAGTC	2 cut(s)	269, 657
SduI	GDGCHC	2 cut(s)	28, 258
SfaNI	GCATC	3 cut(s)	208, 493, 526
SfcI	CTRYAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	418
SmiMI	CAYNNNNRTG	2 cut(s)	109, 522
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	3 cut(s)	83, 565, 685
SsiI	CCGC	2 cut(s)	53, 148
SspI	AATATT	1 cut(s)	602
SspMI	CTAG	1 cut(s)	681
StyI	CCWWGG	2 cut(s)	104, 556
TaaI	ACNGT	2 cut(s)	335, 504
TaiI	ACGT	4 cut(s)	40, 51, 61, 113
TaqI	TCGA	2 cut(s)	346, 381
TasI	AATT	3 cut(s)	83, 565, 685
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	4 cut(s)	232, 338, 452, 667
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	6 cut(s)	154, 157, 160, 163, 514, 547
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	4 cut(s)	240, 311, 330, 557
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	2 cut(s)	75, 537
VpaK11BI	GGWCC	1 cut(s)	418
XapI	RAATTY	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	1 cut(s)	681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.