Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014549.1

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Reverse (-)

11474 .. 12456

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014549.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggaagttttgtcatgggatggaaccctctcgtcacgtgacttccaggctgcagcacgtgcgtttgcagagaactggaagcaattcaaccctgccttgcctccatggacgtgggttccttgtcttacacaaccttctcgtctctctcaagagcagggctacttgtcattggagaagatatgccttcttggtttaaacaaggaagatgagcaggaagctgtagttgaagaagaagagcctgagcctgttgataatgccactcttgtgtgttactatgatttccatatagtatacagtgattcgtatcgggttcctgtcctgtattttcgtgggtactacattgatggacagcctttggcttgggatgagattgaaaaagacttacctgcatgctcatcaaaggtgttgctggaatcgaaatggacattcattactcaggaggagcatccgcacttgaataggccatggtacaagctgcatccatgtgggactagtgagtggatgaagctgctttttcttggtgatgaatccctggctactaatggagtagcggttgagcaatatttggtgtcatggctctcagttgttggtcaagtagttggtcttagaatcccttttgacaggttgaatcaccataaaagttgtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

216

Amino Acids

24.94

Weight (kDa)

4.77

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	2 cut(s)	449, 551
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	2 cut(s)	335, 470
AgsI	TTSAA	5 cut(s)	88, 227, 374, 457, 628
AhlI	ACTAGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	45, 531
AleI	CACNNNNGTG	1 cut(s)	263
AluBI	AGCT	3 cut(s)	218, 475, 508
AluI	AGCT	3 cut(s)	218, 475, 508
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	461
ApeKI	GCWGC	4 cut(s)	50, 53, 475, 508
Asp700I	GAANNNNTTC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	533, 623
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	4 cut(s)	37, 65, 462, 495
BccI	CCATC	2 cut(s)	14, 338
BciT130I	CCWGG	2 cut(s)	47, 533
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	2 cut(s)	51, 219
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	4 cut(s)	51, 54, 476, 509
BlsI	GCNGC	4 cut(s)	52, 55, 477, 510
Bme1390I	CCNGG	2 cut(s)	47, 533
BmgBI	CACGTC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	25, 117, 312
BmrFI	CCNGG	2 cut(s)	47, 533
BmsI	GCATC	2 cut(s)	454, 487
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	104, 464, 531
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse1I	ACTGG	1 cut(s)	80
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	2 cut(s)	47, 533
BseDI	CCNNGG	3 cut(s)	104, 464, 531
BseGI	GGATG	5 cut(s)	25, 370, 445, 478, 507
BseJI	GATNNNNATC	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	231, 449, 594
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	4 cut(s)	37, 65, 462, 495
BshFI	GGCC	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	502
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	463
Bsp19I	CCATGG	2 cut(s)	104, 464
BspACI	CCGC	2 cut(s)	449, 551
BspANI	GGCC	1 cut(s)	463
BspCNI	CTCAG	3 cut(s)	232, 448, 593
BspLI	GGNNCC	3 cut(s)	25, 117, 312
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	394
BspQI	GCTCTTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	104, 464, 531
BssNAI	GTATAC	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	104, 464
Bst1107I	GTATAC	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	47, 533
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	1 cut(s)	391
BstDEI	CTNAG	4 cut(s)	240, 435, 580, 605
BstDSI	CCRYGG	2 cut(s)	104, 464
BstF5I	GGATG	5 cut(s)	25, 370, 445, 478, 507
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	47, 533
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	45, 531
BstSFI	CTRYAG	2 cut(s)	51, 219
BstV1I	GCAGC	4 cut(s)	37, 65, 462, 495
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	463
BtgI	CCRYGG	2 cut(s)	104, 464
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	25, 370, 445, 478, 507
BtsIMutI	CAGTG	1 cut(s)	301
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	334, 469
CviAII	CATG	6 cut(s)	15, 105, 390, 465, 483, 573
CviQI	GTAC	2 cut(s)	334, 469
DdeI	CTNAG	4 cut(s)	240, 435, 580, 605
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	104, 464
Eco72I	CACGTG	2 cut(s)	38, 59
EcoRII	CCWGG	2 cut(s)	45, 531
EcoT14I	CCWWGG	2 cut(s)	104, 464
ErhI	CCWWGG	2 cut(s)	104, 464
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	6 cut(s)	18, 108, 393, 468, 486, 576
FaqI	GGGAC	1 cut(s)	502
FatI	CATG	6 cut(s)	14, 104, 389, 464, 482, 572
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	51, 54, 476, 509
FokI	GGATG	5 cut(s)	32, 377, 432, 465, 514
Fsp4HI	GCNGC	4 cut(s)	51, 54, 476, 509
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	4 cut(s)	51, 54, 476, 509
HaeIII	GGCC	1 cut(s)	463
Hin1II	CATG	6 cut(s)	18, 108, 393, 468, 486, 576
HinfI	GANTC	5 cut(s)	299, 413, 527, 609, 628
HphI	GGTGA	2 cut(s)	533, 623
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188III	TCNNGA	2 cut(s)	149, 437
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	144, 194
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	3 cut(s)	37, 58, 110
HpyCH4V	TGCA	4 cut(s)	53, 68, 389, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	240, 435, 580, 605
HpySE526I	ACGT	3 cut(s)	37, 58, 110
Hsp92II	CATG	6 cut(s)	18, 108, 393, 468, 486, 576
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	442
Lsp1109I	GCAGC	4 cut(s)	37, 65, 462, 495
LweI	GCATC	2 cut(s)	454, 487
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	3 cut(s)	37, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 269
MboII	GAAGA	5 cut(s)	187, 215, 239, 242, 245
MluCI	AATT	2 cut(s)	83, 646
MnlI	CCTC	3 cut(s)	38, 111, 433
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	3 cut(s)	109, 263, 483
MspR9I	CCNGG	2 cut(s)	47, 533
MssI	GTTTAAAC	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	47, 533
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 464
NlaIII	CATG	6 cut(s)	18, 108, 393, 468, 486, 576
NlaIV	GGNNCC	3 cut(s)	25, 117, 312
NmuCI	GTSAC	2 cut(s)	33, 38
NspI	RCATGY	1 cut(s)	393
OliI	CACNNNNGTG	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	299, 413, 527, 609, 628
PkrI	GCNGC	4 cut(s)	52, 55, 477, 510
PmaCI	CACGTG	2 cut(s)	38, 59
PmeI	GTTTAAAC	1 cut(s)	195
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
Psp6I	CCWGG	2 cut(s)	45, 531
PspCI	CACGTG	2 cut(s)	38, 59
PspGI	CCWGG	2 cut(s)	45, 531
PspN4I	GGNNCC	3 cut(s)	25, 117, 312
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	335, 470
RsaNI	GTAC	2 cut(s)	334, 469
RseI	CAYNNNNRTG	3 cut(s)	109, 263, 483
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	51, 54, 476, 509
ScrFI	CCNGG	2 cut(s)	47, 533
SfaNI	GCATC	2 cut(s)	454, 487
SfcI	CTRYAG	2 cut(s)	51, 219
SmiMI	CAYNNNNRTG	3 cut(s)	109, 263, 483
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	491
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	83, 646
SsiI	CCGC	2 cut(s)	449, 551
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	2 cut(s)	45, 531
StyI	CCWWGG	2 cut(s)	104, 464
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	3 cut(s)	40, 61, 113
TaqI	TCGA	1 cut(s)	416
TasI	AATT	2 cut(s)	83, 646
TfiI	GAWTC	5 cut(s)	299, 413, 527, 609, 628
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	4 cut(s)	50, 53, 475, 508
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	3 cut(s)	418, 518, 540
TspRI	CASTG	1 cut(s)	301
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.