Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

20865137 .. 20866870

Gene Structure 1734 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGAAAGAGTGGTTTTTATATGTGGTGACAGATATTGGAGTACATCGTCTGAAACTGGATATCCGAAAACTGAGAAACGGAAACAGAATTCCAAAGCTGAATCAGCGTCCACCGGTAGAGTTTGAAGATCTGGAGCTCCTTTCGCCTGATGGTAAGTTTCCATATTATACGCAACACATAATTGTGGGTTCTCAAGTATATTTGGTGGGGGGTTATTATTCTAACGATGAACCCAACATATTTGATGCTTATGCCATTAACCCTAACACCACATGTGTTACCTCCGCTGCCTTTCCTTATGACTATCCCGACTTGTTGTCTGCCCTGAGCAAATCCAGTGCTACCTTGTTTCAAGTTGGGTCTTCATTTTATATTCTGGACGCATCACAGGGCATCACCTTTTCTGTGCTTGAACCCAAAGGAACTGACGGATGCACCAAAAGAATCCTACCTAATCCGCCCGTTTCCAGAGTGTCGAACCACACTAGTTGGGGACACAAGATCCATATTACTACTCTCGGCATTCCATTCACTAGTCGCGGCGCTTCATACACCTTTGACTTGTGCAAAGAAAAATGGGATAAATGGCCTGATCAATTTAGAGCTGCTGTTGAATATAAAGGTTTTTTTATTGGCCTCTTACCTACTGGACTACTTGTTTGTTCTCGGATGGATTCCAATGGAAATCCTGAGCGCCCACTTAAGGTGCTTCATGACCTGTTTGACATCTTCAATCTCAAGGGTCCCTATTTTTTAGAGTTGGATCAAGTTTTTATGGGCTTATTTGACGATGGTGAGGACAACTTTATCTGGTTAGTAAATTCTTTTGAGGGTGTTGAAGCGGATCTACATTGCCATATGCCTTTTTTGCTGTTCCGAGTTTTCATTGAAAATGACCCTGATGACAATTCAGTCCTCTCCGCAGTCCTTGAAGCTGCAGAATACTATGATTTCTTCGAGGACAATGTGTTCTGTACGGCTTTTGCATGTGCCAACATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

335

Amino Acids

37.98

Weight (kDa)

4.84

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	914
AccII	CGCG	1 cut(s)	543
AciI	CCGC	5 cut(s)	288, 461, 543, 845, 924
AclWI	GGATC	3 cut(s)	499, 774, 855
AcsI	RAATTY	2 cut(s)	90, 823
AfaI	GTAC	2 cut(s)	45, 979
AfiI	CCNNNNNNNGG	1 cut(s)	706
AflII	CTTAAG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	115
AgsI	TTSAA	8 cut(s)	128, 356, 416, 617, 736, 842, 893, 935
AhdI	GACNNNNNGTC	1 cut(s)	319
AhlI	ACTAGT	2 cut(s)	488, 536
AloI	GAACNNNNNNTCC	2 cut(s)	956, 988
AluBI	AGCT	4 cut(s)	100, 139, 608, 938
AluI	AGCT	4 cut(s)	100, 139, 608, 938
Alw21I	GWGCWC	1 cut(s)	141
AlwI	GGATC	3 cut(s)	499, 774, 855
AoxI	GGCC	2 cut(s)	590, 637
ApeKI	GCWGC	3 cut(s)	290, 608, 938
ApoI	RAATTY	2 cut(s)	90, 823
ArsI	GACNNNNNNTTYG	2 cut(s)	645, 677
AsiGI	ACCGGT	1 cut(s)	115
AspLEI	GCGC	2 cut(s)	548, 699
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	3 cut(s)	40, 391, 809
AvaII	GGWCC	1 cut(s)	746
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	834, 866
BbsI	GAAGAC	1 cut(s)	357
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	277, 595, 925
BccI	CCATC	3 cut(s)	146, 667, 788
BceAI	ACGGC	1 cut(s)	996
BclI	TGATCA	1 cut(s)	595
BcuI	ACTAGT	2 cut(s)	488, 536
BfaI	CTAG	2 cut(s)	489, 537
BfmI	CTRYAG	1 cut(s)	939
BfoI	RGCGCY	2 cut(s)	549, 700
BfrI	CTTAAG	1 cut(s)	704
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	4 cut(s)	291, 544, 609, 939
BlsI	GCNGC	4 cut(s)	292, 545, 610, 940
Bme18I	GGWCC	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	2 cut(s)	747, 748
BmsI	GCATC	4 cut(s)	238, 395, 405, 425
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	2 cut(s)	329, 693
BpuEI	CTTGAG	2 cut(s)	180, 725
BsaWI	WCCGGW	1 cut(s)	115
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	3 cut(s)	63, 339, 655
Bse3DI	GCAATG	1 cut(s)	853
BseGI	GGATG	2 cut(s)	440, 678
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	3 cut(s)	65, 320, 684
BseNI	ACTGG	3 cut(s)	63, 339, 655
BseXI	GCAGC	3 cut(s)	277, 595, 925
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	592, 639
BshTI	ACCGGT	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	510, 732
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmFI	GGGAC	2 cut(s)	510, 732
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	592, 639
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	5 cut(s)	130, 504, 595, 766, 847
BspACI	CCGC	5 cut(s)	288, 461, 543, 845, 924
BspANI	GGCC	2 cut(s)	592, 639
BspCNI	CTCAG	3 cut(s)	66, 321, 685
BspFNI	CGCG	1 cut(s)	543
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	747, 748
BspMAI	CTGCAG	1 cut(s)	943
BspPI	GGATC	3 cut(s)	499, 774, 855
BspTI	CTTAAG	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	853
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	63, 339, 655
BssAI	RCCGGY	1 cut(s)	115
BssMI	GATC	5 cut(s)	130, 504, 595, 766, 847
BstAFI	CTTAAG	1 cut(s)	704
BstDEI	CTNAG	3 cut(s)	74, 329, 693
BstF5I	GGATG	2 cut(s)	440, 678
BstFNI	CGCG	1 cut(s)	543
BstH2I	RGCGCY	2 cut(s)	549, 700
BstHHI	GCGC	2 cut(s)	548, 699
BstKTI	GATC	5 cut(s)	133, 507, 598, 769, 850
BstMBI	GATC	5 cut(s)	130, 504, 595, 766, 847
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 145, 871
BstNSI	RCATGY	2 cut(s)	279, 993
BstSFI	CTRYAG	1 cut(s)	939
BstUI	CGCG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	277, 595, 925
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	3 cut(s)	130, 504, 847
BstYI	RGATCY	3 cut(s)	130, 504, 847
BsuRI	GGCC	2 cut(s)	592, 639
BtsCI	GGATG	2 cut(s)	440, 678
BtsIMutI	CAGTG	1 cut(s)	346
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	2 cut(s)	548, 699
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	746
CseI	GACGC	2 cut(s)	98, 392
Csp6I	GTAC	2 cut(s)	44, 978
CspAI	ACCGGT	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	473, 508
CviAII	CATG	3 cut(s)	276, 716, 990
CviJI	RGCY	8 cut(s)	100, 139, 592, 608, 639, 783, 938, 983
CviKI_1	RGCY	8 cut(s)	100, 139, 592, 608, 639, 783, 938, 983
CviQI	GTAC	2 cut(s)	44, 978
DdeI	CTNAG	3 cut(s)	74, 329, 693
DpnI	GATC	5 cut(s)	132, 506, 597, 768, 849
DpnII	GATC	5 cut(s)	130, 504, 595, 766, 847
DrdI	GACNNNNNNGTC	1 cut(s)	914
DriI	GACNNNNNGTC	1 cut(s)	319
DseDI	GACNNNNNNGTC	1 cut(s)	914
Eam1105I	GACNNNNNGTC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	746
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	90
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	141
FaeI	CATG	3 cut(s)	279, 719, 993
FaqI	GGGAC	2 cut(s)	510, 732
FatI	CATG	3 cut(s)	275, 715, 989
FauNDI	CATATG	1 cut(s)	861
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	291, 544, 609, 939
FokI	GGATG	2 cut(s)	447, 685
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	291, 544, 609, 939
FspBI	CTAG	2 cut(s)	489, 537
GlaI	GCGC	2 cut(s)	547, 698
GluI	GCNGC	4 cut(s)	291, 544, 609, 939
GsuI	CTGGAG	1 cut(s)	155
HaeII	RGCGCY	2 cut(s)	549, 700
HaeIII	GGCC	2 cut(s)	592, 639
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	2 cut(s)	98, 392
HhaI	GCGC	2 cut(s)	548, 699
Hin1II	CATG	3 cut(s)	279, 719, 993
Hin6I	GCGC	2 cut(s)	546, 697
HinP1I	GCGC	2 cut(s)	546, 697
HinfI	GANTC	3 cut(s)	103, 447, 677
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	40, 391, 809
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	4 cut(s)	54, 68, 672, 881
Hpy188III	TCNNGA	6 cut(s)	134, 311, 380, 471, 692, 716
Hpy8I	GTNNAC	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	438, 570, 941, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 145, 871
HpyF3I	CTNAG	3 cut(s)	74, 329, 693
Hsp92II	CATG	3 cut(s)	279, 719, 993
HspAI	GCGC	2 cut(s)	546, 697
KflI	GGGWCCC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	5 cut(s)	130, 504, 595, 766, 847
LmnI	GCTCC	2 cut(s)	136, 144
Lsp1109I	GCAGC	3 cut(s)	277, 595, 925
LweI	GCATC	4 cut(s)	238, 395, 405, 425
MaeI	CTAG	2 cut(s)	489, 537
MaeIII	GTNAC	2 cut(s)	28, 280
MalI	GATC	5 cut(s)	132, 506, 597, 768, 849
MboI	GATC	5 cut(s)	130, 504, 595, 766, 847
MboII	GAAGA	4 cut(s)	140, 357, 724, 949
MflI	RGATCY	3 cut(s)	130, 504, 847
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	5 cut(s)	90, 183, 599, 823, 910
MmeI	TCCRAC	1 cut(s)	744
MnlI	CCTC	6 cut(s)	295, 650, 793, 826, 929, 955
MseI	TTAA	2 cut(s)	261, 705
MslI	CAYNNNNRTG	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	704
MspI	CCGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	525
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	106, 145, 871
NdeI	CATATG	1 cut(s)	861
NdeII	GATC	5 cut(s)	130, 504, 595, 766, 847
NlaIII	CATG	3 cut(s)	279, 719, 993
NlaIV	GGNNCC	2 cut(s)	747, 748
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	2 cut(s)	279, 993
PagI	TCATGA	1 cut(s)	715
PciI	ACATGT	1 cut(s)	275
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	3 cut(s)	103, 447, 677
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	292, 545, 610, 940
PpuMI	RGGWCCY	1 cut(s)	746
PscI	ACATGT	1 cut(s)	275
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	1 cut(s)	746
PspN4I	GGNNCC	2 cut(s)	747, 748
PspPI	GGNCC	1 cut(s)	746
PspPPI	RGGWCCY	1 cut(s)	746
PstI	CTGCAG	1 cut(s)	943
PsuI	RGATCY	3 cut(s)	130, 504, 847
RsaI	GTAC	2 cut(s)	45, 979
RsaNI	GTAC	2 cut(s)	44, 978
RseI	CAYNNNNRTG	1 cut(s)	185
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	2 cut(s)	261, 705
SatI	GCNGC	4 cut(s)	291, 544, 609, 939
Sau3AI	GATC	5 cut(s)	130, 504, 595, 766, 847
Sau96I	GGNCC	1 cut(s)	746
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	4 cut(s)	238, 395, 405, 425
SfcI	CTRYAG	1 cut(s)	939
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	185
SmlI	CTYRAG	3 cut(s)	195, 704, 740
SmoI	CTYRAG	3 cut(s)	195, 704, 740
SpeI	ACTAGT	2 cut(s)	488, 536
Sse9I	AATT	5 cut(s)	90, 183, 599, 823, 910
SsiI	CCGC	5 cut(s)	288, 461, 543, 845, 924
SspMI	CTAG	2 cut(s)	489, 537
SstI	GAGCTC	1 cut(s)	141
TaqI	TCGA	2 cut(s)	479, 960
TasI	AATT	5 cut(s)	90, 183, 599, 823, 910
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	546
TfiI	GAWTC	3 cut(s)	103, 447, 677
Tru1I	TTAA	2 cut(s)	261, 705
Tru9I	TTAA	2 cut(s)	261, 705
TscAI	CASTG	1 cut(s)	346
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	3 cut(s)	290, 608, 938
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	5 cut(s)	246, 357, 540, 704, 877
TspGWI	ACGGA	2 cut(s)	96, 447
TspRI	CASTG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	704
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	2 cut(s)	90, 823
XceI	RCATGY	2 cut(s)	279, 993
XspI	CTAG	2 cut(s)	489, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.