Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Reverse (-)

23673530 .. 23674499

Gene Structure 970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012901

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGTTCTGTCATGGGATGGAACCCTCTCGTCACGTGACTTCCAGGTTGCGGCACGTGCTTTTGCAGAGAACTGGAAGCAATTCAACCCTGCCTTGCCTCCATGGACGTGGGTTCCTTGTCTTAAACAACCTTCTCGTCTCTCTCAAGAGCAGGGCTACTTGTCATTGGAGAAGATATGCCTTCTTGGATCGAACAAGGAAGATGAGCAGGAAGATGTAGATGAAGAAGAGCCTGAGACTGTTGATAATGCCACGCTTGTTGAGAAAGCTGGTCCTCAGGTGTGTTACTATGATTTTCATATAGTATACAGTGATTCGTATCGGGTTCCTGTCCTGTATTTTCGTGGGTACTACATTGATGGACAACCTTTGGCTTGGGATGAGATTGAAAAGGACTTACCTGCATGCTCATCAAAGGTGTTGCCGCTGGAATCGAAATGGACATTCATAACTCAGGAGGAGCATCCGCACTTGAATAGGCCATGGTACAAGCTGCATCCATGTGGGACTTGTGAGTGGATGAAGCTGCTTTTTCTTGGTGATGAATCCCTGGCTACGAATGGAGTAGCGGTTGAGCAATATTTGGTGTCATGGCTCTCAGTTGTTGGTCAAGTAGTTGGCCTTAGAATCCCTTTTGACATGTTGAATCACCATAAAAGTTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

224

Amino Acids

25.77

Weight (kDa)

4.72

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	22 - 212	2.1e-46	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
Acc36I	ACCTGC	1 cut(s)	412
AccI	GTMKAC	1 cut(s)	309
AciI	CCGC	4 cut(s)	53, 428, 470, 572
AclWI	GGATC	1 cut(s)	199
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	2 cut(s)	353, 491
AfiI	CCNNNNNNNGG	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	4 cut(s)	88, 392, 478, 649
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	45, 552
AluBI	AGCT	3 cut(s)	272, 496, 529
AluI	AGCT	3 cut(s)	272, 496, 529
Alw26I	GTCTC	2 cut(s)	146, 233
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	482, 622
ApeKI	GCWGC	2 cut(s)	496, 529
Asp700I	GAANNNNTTC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	2 cut(s)	554, 644
AvaII	GGWCC	1 cut(s)	275
AxyI	CCTNAGG	1 cut(s)	279
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	2 cut(s)	483, 516
BccI	CCATC	2 cut(s)	14, 356
BciT130I	CCWGG	2 cut(s)	47, 554
BcoDI	GTCTC	2 cut(s)	146, 233
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	4 cut(s)	54, 428, 497, 530
BlsI	GCNGC	4 cut(s)	55, 429, 498, 531
Bme1390I	CCNGG	2 cut(s)	47, 554
Bme18I	GGWCC	1 cut(s)	275
BmgBI	CACGTC	1 cut(s)	111
BmgT120I	GGNCC	1 cut(s)	275
BmiI	GGNNCC	3 cut(s)	25, 117, 330
BmrFI	CCNGG	2 cut(s)	47, 554
BmsI	GCATC	2 cut(s)	475, 508
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	104, 485, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	80
Bse21I	CCTNAGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	47, 554
BseDI	CCNNGG	3 cut(s)	104, 485, 552
BseGI	GGATG	5 cut(s)	25, 388, 466, 499, 528
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	4 cut(s)	228, 293, 470, 615
BseNI	ACTGG	1 cut(s)	80
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	483, 516
BshFI	GGCC	2 cut(s)	484, 624
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	2 cut(s)	146, 233
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	484, 624
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	2 cut(s)	104, 485
BspACI	CCGC	4 cut(s)	53, 428, 470, 572
BspANI	GGCC	2 cut(s)	484, 624
BspCNI	CTCAG	4 cut(s)	229, 292, 469, 614
BspLI	GGNNCC	3 cut(s)	25, 117, 330
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	80
BssECI	CCNNGG	3 cut(s)	104, 485, 552
BssMI	GATC	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	310
BssT1I	CCWWGG	2 cut(s)	104, 485
Bst1107I	GTATAC	1 cut(s)	310
Bst2UI	CCWGG	2 cut(s)	47, 554
Bst4CI	ACNGT	2 cut(s)	244, 314
Bst6I	CTCTTC	1 cut(s)	225
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	5 cut(s)	237, 279, 456, 601, 626
BstDSI	CCRYGG	2 cut(s)	104, 485
BstF5I	GGATG	5 cut(s)	25, 388, 466, 499, 528
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	2 cut(s)	146, 233
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	47, 554
BstNSI	RCATGY	2 cut(s)	411, 646
BstSCI	CCNGG	2 cut(s)	45, 552
BstV1I	GCAGC	2 cut(s)	483, 516
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	484, 624
BtgI	CCRYGG	2 cut(s)	104, 485
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	25, 388, 466, 499, 528
BtsIMutI	CAGTG	1 cut(s)	319
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	352, 490
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	7 cut(s)	15, 105, 408, 486, 504, 594, 643
CviQI	GTAC	2 cut(s)	352, 490
DdeI	CTNAG	5 cut(s)	237, 279, 456, 601, 626
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	104, 485
Eco47I	GGWCC	1 cut(s)	275
Eco72I	CACGTG	2 cut(s)	38, 59
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	2 cut(s)	45, 552
EcoT14I	CCWWGG	2 cut(s)	104, 485
ErhI	CCWWGG	2 cut(s)	104, 485
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	7 cut(s)	18, 108, 411, 489, 507, 597, 646
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	7 cut(s)	14, 104, 407, 485, 503, 593, 642
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	54, 428, 497, 530
FokI	GGATG	5 cut(s)	32, 395, 453, 486, 535
Fsp4HI	GCNGC	4 cut(s)	54, 428, 497, 530
GluI	GCNGC	4 cut(s)	54, 428, 497, 530
HaeIII	GGCC	2 cut(s)	484, 624
Hin1II	CATG	7 cut(s)	18, 108, 411, 489, 507, 597, 646
HinfI	GANTC	5 cut(s)	317, 434, 548, 630, 649
HphI	GGTGA	2 cut(s)	554, 644
Hpy166II	GTNNAC	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	149, 458
Hpy8I	GTNNAC	1 cut(s)	310
HpyAV	CCTTC	2 cut(s)	144, 194
HpyCH4III	ACNGT	2 cut(s)	244, 314
HpyCH4IV	ACGT	3 cut(s)	37, 58, 110
HpyCH4V	TGCA	3 cut(s)	68, 407, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	5 cut(s)	237, 279, 456, 601, 626
HpySE526I	ACGT	3 cut(s)	37, 58, 110
Hsp92II	CATG	7 cut(s)	18, 108, 411, 489, 507, 597, 646
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	2 cut(s)	483, 516
LweI	GCATC	2 cut(s)	475, 508
MaeII	ACGT	3 cut(s)	37, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 287
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	5 cut(s)	187, 215, 227, 239, 242
MluCI	AATT	2 cut(s)	83, 667
MnlI	CCTC	4 cut(s)	38, 111, 288, 454
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	109, 504
MspA1I	CMGCKG	1 cut(s)	430
MspR9I	CCNGG	2 cut(s)	47, 554
MvaI	CCWGG	2 cut(s)	47, 554
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 485
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	7 cut(s)	18, 108, 411, 489, 507, 597, 646
NlaIV	GGNNCC	3 cut(s)	25, 117, 330
NmuCI	GTSAC	2 cut(s)	33, 38
NspI	RCATGY	2 cut(s)	411, 646
PaeI	GCATGC	1 cut(s)	411
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	317, 434, 548, 630, 649
PkrI	GCNGC	4 cut(s)	55, 429, 498, 531
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
PscI	ACATGT	1 cut(s)	642
PsiI	TTATAA	1 cut(s)	666
Psp6I	CCWGG	2 cut(s)	45, 552
PspCI	CACGTG	2 cut(s)	38, 59
PspGI	CCWGG	2 cut(s)	45, 552
PspN4I	GGNNCC	3 cut(s)	25, 117, 330
PspPI	GGNCC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	353, 491
RsaNI	GTAC	2 cut(s)	352, 490
RseI	CAYNNNNRTG	2 cut(s)	109, 504
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	4 cut(s)	54, 428, 497, 530
Sau3AI	GATC	1 cut(s)	191
Sau96I	GGNCC	1 cut(s)	275
ScrFI	CCNGG	2 cut(s)	47, 554
SfaNI	GCATC	2 cut(s)	475, 508
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	109, 504
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	2 cut(s)	83, 667
SsiI	CCGC	4 cut(s)	53, 428, 470, 572
SspI	AATATT	1 cut(s)	584
StyD4I	CCNGG	2 cut(s)	45, 552
StyI	CCWWGG	2 cut(s)	104, 485
TaaI	ACNGT	2 cut(s)	244, 314
TaiI	ACGT	3 cut(s)	40, 61, 113
TaqI	TCGA	2 cut(s)	194, 437
TasI	AATT	2 cut(s)	83, 667
TauI	GCSGC	2 cut(s)	56, 430
TfiI	GAWTC	5 cut(s)	317, 434, 548, 630, 649
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	2 cut(s)	496, 529
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	5 cut(s)	240, 290, 439, 539, 561
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	275
XceI	RCATGY	2 cut(s)	411, 646
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.