Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

43433850 .. 43434832

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAAGTTTTGTCATGGGATGGAACCCTCTCGTCACGTGACTTCCAGGCTGCAGCACGTGCTTTTGCAGAGAACTGGAAGCAATTCAACCCTGCCTTGCCTCCATGGACGTGGGTTCCTTGTCTTAAACAACCTTCTCGTCTCTCTCAAGAGCAGGGCTACTTGTCATTGGAGAAGATATGCCTTCTTGGATCAAACAAGGAACATGAGCAGGAAGCTGTAGTTGAAGAAGAAGAGCCTGAGCCTGTTGATAATGCCACTCTTGTTGAGACCAGTGGCCATCAGGTGTGTTACTATGATTTCCATATAGTATACAGTGATTCGTATCGGGTTCCTGTGCTGTATTTTCGTGGGTACTACATTGATGGACAGCCTTTGGCTTGGGATGAGATTGAAAAAGACTTACCTGCATGCTCATCAAAGGTGTTGCTGGAATCGAAATGGACATTCATTACTCAGGAGGAGCATCCGCACTTGAATAGGCCATGGTACAAGCTGCATCCATGTGGGACTAGTGAGTGGATGAAGCTGCTTTTTCTTGGTGATGAATCCCTGGCTACTAATGGAGTAGCGGTTGAGCAATATTTGGTGTCATGGCTCTCAGTTGTTGGTCAAGTAGTTGGTCTTAGAATCCCTTTTGACATGTTGAATCACCATAAAAGTTGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

223

Amino Acids

25.68

Weight (kDa)

4.91

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	15 - 212	5.5e-47	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	312
AciI	CCGC	2 cut(s)	470, 572
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	277
AcvI	CACGTG	2 cut(s)	38, 59
AfaI	GTAC	2 cut(s)	356, 491
AflIII	ACRYGT	1 cut(s)	642
AgsI	TTSAA	5 cut(s)	88, 227, 395, 478, 649
AhlI	ACTAGT	1 cut(s)	512
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	2 cut(s)	45, 552
AluBI	AGCT	3 cut(s)	218, 496, 529
AluI	AGCT	3 cut(s)	218, 496, 529
Alw26I	GTCTC	2 cut(s)	146, 263
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	277, 482
ApeKI	GCWGC	4 cut(s)	50, 53, 496, 529
Asp700I	GAANNNNTTC	1 cut(s)	83
AsuHPI	GGTGA	2 cut(s)	554, 644
BalI	TGGCCA	1 cut(s)	279
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	4 cut(s)	37, 65, 483, 516
BccI	CCATC	3 cut(s)	14, 288, 359
BciT130I	CCWGG	2 cut(s)	47, 554
BcoDI	GTCTC	2 cut(s)	146, 263
BcuI	ACTAGT	1 cut(s)	512
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	51, 219
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	4 cut(s)	51, 54, 497, 530
BlsI	GCNGC	4 cut(s)	52, 55, 498, 531
Bme1390I	CCNGG	2 cut(s)	47, 554
BmgBI	CACGTC	1 cut(s)	111
BmiI	GGNNCC	3 cut(s)	25, 117, 333
BmrFI	CCNGG	2 cut(s)	47, 554
BmsI	GCATC	2 cut(s)	475, 508
Bpu10I	CCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	132
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	324
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	3 cut(s)	104, 485, 552
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bse1I	ACTGG	2 cut(s)	80, 273
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	47, 554
BseDI	CCNNGG	3 cut(s)	104, 485, 552
BseGI	GGATG	5 cut(s)	25, 391, 466, 499, 528
BseJI	GATNNNNATC	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	231, 470, 615
BseNI	ACTGG	2 cut(s)	80, 273
BseRI	GAGGAG	1 cut(s)	476
BseXI	GCAGC	4 cut(s)	37, 65, 483, 516
BshFI	GGCC	2 cut(s)	279, 484
BslFI	GGGAC	1 cut(s)	523
BsmAI	GTCTC	2 cut(s)	146, 263
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	2 cut(s)	279, 484
Bso31I	GGTCTC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	2 cut(s)	104, 485
BspACI	CCGC	2 cut(s)	470, 572
BspANI	GGCC	2 cut(s)	279, 484
BspCNI	CTCAG	3 cut(s)	232, 469, 614
BspLI	GGNNCC	3 cut(s)	25, 117, 333
BspMAI	CTGCAG	1 cut(s)	55
BspMI	ACCTGC	1 cut(s)	415
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	80, 273
BssECI	CCNNGG	3 cut(s)	104, 485, 552
BssMI	GATC	1 cut(s)	191
BssNAI	GTATAC	1 cut(s)	313
BssT1I	CCWWGG	2 cut(s)	104, 485
Bst1107I	GTATAC	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	47, 554
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	228
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstC8I	GCNNGC	1 cut(s)	412
BstDEI	CTNAG	4 cut(s)	240, 456, 601, 626
BstDSI	CCRYGG	2 cut(s)	104, 485
BstF5I	GGATG	5 cut(s)	25, 391, 466, 499, 528
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	2 cut(s)	146, 263
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	2 cut(s)	47, 554
BstNSI	RCATGY	2 cut(s)	414, 646
BstSCI	CCNGG	2 cut(s)	45, 552
BstSFI	CTRYAG	2 cut(s)	51, 219
BstV1I	GCAGC	4 cut(s)	37, 65, 483, 516
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstZ17I	GTATAC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	279, 484
BtgI	CCRYGG	2 cut(s)	104, 485
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	5 cut(s)	25, 391, 466, 499, 528
BtsIMutI	CAGTG	2 cut(s)	280, 322
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	412
Csp6I	GTAC	2 cut(s)	355, 490
CspCI	CAANNNNNGTGG	2 cut(s)	247, 282
CviAII	CATG	8 cut(s)	15, 105, 206, 411, 486, 504, 594, 643
CviQI	GTAC	2 cut(s)	355, 490
DdeI	CTNAG	4 cut(s)	240, 456, 601, 626
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Eco130I	CCWWGG	2 cut(s)	104, 485
Eco31I	GGTCTC	1 cut(s)	263
Eco72I	CACGTG	2 cut(s)	38, 59
EcoRII	CCWGG	2 cut(s)	45, 552
EcoT14I	CCWWGG	2 cut(s)	104, 485
ErhI	CCWWGG	2 cut(s)	104, 485
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	8 cut(s)	18, 108, 209, 414, 489, 507, 597, 646
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	8 cut(s)	14, 104, 205, 410, 485, 503, 593, 642
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	51, 54, 497, 530
FokI	GGATG	5 cut(s)	32, 398, 453, 486, 535
Fsp4HI	GCNGC	4 cut(s)	51, 54, 497, 530
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	4 cut(s)	51, 54, 497, 530
HaeIII	GGCC	2 cut(s)	279, 484
Hin1II	CATG	8 cut(s)	18, 108, 209, 414, 489, 507, 597, 646
HinfI	GANTC	5 cut(s)	320, 434, 548, 630, 649
HphI	GGTGA	2 cut(s)	554, 644
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	149, 458
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	144, 194
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	3 cut(s)	37, 58, 110
HpyCH4V	TGCA	4 cut(s)	53, 68, 410, 499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	240, 456, 601, 626
HpySE526I	ACGT	3 cut(s)	37, 58, 110
Hsp92II	CATG	8 cut(s)	18, 108, 209, 414, 489, 507, 597, 646
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	463
Lsp1109I	GCAGC	4 cut(s)	37, 65, 483, 516
LweI	GCATC	2 cut(s)	475, 508
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	3 cut(s)	37, 58, 110
MaeIII	GTNAC	3 cut(s)	33, 38, 290
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	4 cut(s)	187, 239, 242, 245
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	83, 667
MluNI	TGGCCA	1 cut(s)	279
MnlI	CCTC	3 cut(s)	38, 111, 454
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	83
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	109, 504
Msp20I	TGGCCA	1 cut(s)	279
MspR9I	CCNGG	2 cut(s)	47, 554
MvaI	CCWGG	2 cut(s)	47, 554
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 485
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	8 cut(s)	18, 108, 209, 414, 489, 507, 597, 646
NlaIV	GGNNCC	3 cut(s)	25, 117, 333
NmuCI	GTSAC	2 cut(s)	33, 38
NspI	RCATGY	2 cut(s)	414, 646
PaeI	GCATGC	1 cut(s)	414
PciI	ACATGT	1 cut(s)	642
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	5 cut(s)	320, 434, 548, 630, 649
PkrI	GCNGC	4 cut(s)	52, 55, 498, 531
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
PscI	ACATGT	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	45, 552
PspCI	CACGTG	2 cut(s)	38, 59
PspGI	CCWGG	2 cut(s)	45, 552
PspN4I	GGNNCC	3 cut(s)	25, 117, 333
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	2 cut(s)	356, 491
RsaNI	GTAC	2 cut(s)	355, 490
RseI	CAYNNNNRTG	2 cut(s)	109, 504
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	4 cut(s)	51, 54, 497, 530
Sau3AI	GATC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	47, 554
SfaNI	GCATC	2 cut(s)	475, 508
SfcI	CTRYAG	2 cut(s)	51, 219
SmiMI	CAYNNNNRTG	2 cut(s)	109, 504
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
SpeI	ACTAGT	1 cut(s)	512
SphI	GCATGC	1 cut(s)	414
Sse9I	AATT	2 cut(s)	83, 667
SsiI	CCGC	2 cut(s)	470, 572
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	45, 552
StyI	CCWWGG	2 cut(s)	104, 485
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	3 cut(s)	40, 61, 113
TaqI	TCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	83, 667
TfiI	GAWTC	5 cut(s)	320, 434, 548, 630, 649
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	2 cut(s)	280, 322
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	4 cut(s)	50, 53, 496, 529
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	3 cut(s)	439, 539, 561
TspRI	CASTG	2 cut(s)	280, 322
XceI	RCATGY	2 cut(s)	414, 646
XmiI	GTMKAC	1 cut(s)	312
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.