Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

23580201 .. 23580954

Gene Structure 754 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1148000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGGTTTTGGGATGGGATGGAGCCCTCTCGTCACGTGACTTCTATGTCGCAGCACGTGCTTTTGCGGACAACTGGAAAGAATTCAACTCCCCCTTTCCTCCATGGAATTGGGTTCCTTCTCCTCATCGCTCTCAGTTGCAGCAGCAGCGGGGCTACTTGTCATTGGAGAGGATTTGCCTTCTCGGGTCAAGCAAGGAAGATGTTAATGAAGAGAATCACACTGAGGAAGAAGAGGGGTCTGAGCCCGTAGATAATGCCACTCTGGTTGAGACCAGTAGTCCTCAAGTATATTACCACGACTTCCATATAGTCTACAGTGATTCATATCGGGTTCCCGTGCTGTATTTTCGCAGTTACTACATCGGTATGTTAACCTGTTATCAGCTACTTAAGCAGCAAAATTCAGTGAATCGCTTTGGAATCCATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

145

Amino Acids

16.78

Weight (kDa)

4.99

Isoelectric Point (pI)

66.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	22 - 120	4.7e-15	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	2 cut(s)	68, 151
AcsI	RAATTY	2 cut(s)	83, 403
AcvI	CACGTG	2 cut(s)	38, 59
AflII	CTTAAG	1 cut(s)	392
AgsI	TTSAA	1 cut(s)	88
AhdI	GACNNNNNGTC	1 cut(s)	279
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	185
ApeKI	GCWGC	5 cut(s)	53, 142, 145, 148, 397
ApoI	RAATTY	2 cut(s)	83, 403
Asp700I	GAANNNNTTC	1 cut(s)	83
AvaI	CYCGRG	1 cut(s)	185
BanII	GRGCYC	2 cut(s)	28, 249
BbrPI	CACGTG	2 cut(s)	38, 59
BbvI	GCAGC	5 cut(s)	65, 154, 157, 160, 409
BccI	CCATC	2 cut(s)	9, 14
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	316
BfrI	CTTAAG	1 cut(s)	392
BisI	GCNGC	5 cut(s)	54, 143, 146, 149, 398
BlsI	GCNGC	5 cut(s)	55, 144, 147, 150, 399
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	25, 117, 336
BpuEI	CTTGAG	1 cut(s)	270
BsaAI	YACGTR	2 cut(s)	38, 59
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	104, 427
Bse1I	ACTGG	2 cut(s)	80, 276
Bse8I	GATNNNNATC	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	104, 427
BseGI	GGATG	2 cut(s)	20, 25
BseJI	GATNNNNATC	1 cut(s)	327
BseMII	CTCAG	3 cut(s)	149, 216, 234
BseNI	ACTGG	2 cut(s)	80, 276
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	65, 154, 157, 160, 409
BsiHKCI	CYCGRG	1 cut(s)	185
BsmAI	GTCTC	1 cut(s)	266
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	28, 249
Bsp19I	CCATGG	2 cut(s)	104, 427
BspACI	CCGC	2 cut(s)	68, 151
BspCNI	CTCAG	3 cut(s)	148, 217, 235
BspLI	GGNNCC	3 cut(s)	25, 117, 336
BspTI	CTTAAG	1 cut(s)	392
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	80, 276
BssECI	CCNNGG	2 cut(s)	104, 427
BssT1I	CCWWGG	2 cut(s)	104, 427
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	2 cut(s)	207, 228
BstAFI	CTTAAG	1 cut(s)	392
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	2 cut(s)	38, 59
BstDEI	CTNAG	3 cut(s)	135, 225, 243
BstDSI	CCRYGG	2 cut(s)	104, 427
BstF5I	GGATG	2 cut(s)	20, 25
BstMAI	GTCTC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 148, 394
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	5 cut(s)	65, 154, 157, 160, 409
BstXI	CCANNNNNNTGG	1 cut(s)	111
BtgI	CCRYGG	2 cut(s)	104, 427
BtgZI	GCGATG	1 cut(s)	113
BtsCI	GGATG	2 cut(s)	20, 25
BtsIMutI	CAGTG	3 cut(s)	222, 325, 414
CspCI	CAANNNNNGTGG	2 cut(s)	250, 285
CviAII	CATG	2 cut(s)	105, 428
CviJI	RGCY	4 cut(s)	26, 156, 247, 388
CviKI_1	RGCY	4 cut(s)	26, 156, 247, 388
DdeI	CTNAG	3 cut(s)	135, 225, 243
DrdI	GACNNNNNNGTC	1 cut(s)	47
DriI	GACNNNNNGTC	1 cut(s)	279
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eam1104I	CTCTTC	2 cut(s)	207, 228
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	2 cut(s)	207, 228
Eco130I	CCWWGG	2 cut(s)	104, 427
Eco24I	GRGCYC	2 cut(s)	28, 249
Eco31I	GGTCTC	1 cut(s)	266
Eco72I	CACGTG	2 cut(s)	38, 59
Eco88I	CYCGRG	1 cut(s)	185
EcoRI	GAATTC	1 cut(s)	83
EcoT14I	CCWWGG	2 cut(s)	104, 427
EcoT38I	GRGCYC	2 cut(s)	28, 249
ErhI	CCWWGG	2 cut(s)	104, 427
FaeI	CATG	2 cut(s)	108, 431
FaiI	YATR	8 cut(s)	48, 106, 292, 309, 311, 328, 371, 429
FatI	CATG	2 cut(s)	104, 427
FauI	CCCGC	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	54, 143, 146, 149, 398
FokI	GGATG	2 cut(s)	27, 32
FriOI	GRGCYC	2 cut(s)	28, 249
Fsp4HI	GCNGC	5 cut(s)	54, 143, 146, 149, 398
GluI	GCNGC	5 cut(s)	54, 143, 146, 149, 398
Hin1II	CATG	2 cut(s)	108, 431
HincII	GTYRAC	1 cut(s)	375
HindII	GTYRAC	1 cut(s)	375
HinfI	GANTC	4 cut(s)	217, 323, 412, 423
HpaI	GTTAAC	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	316, 375
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	2 cut(s)	316, 375
HpyAV	CCTTC	2 cut(s)	129, 191
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	2 cut(s)	37, 58
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 148, 394
HpyF3I	CTNAG	3 cut(s)	135, 225, 243
HpySE526I	ACGT	2 cut(s)	37, 58
Hsp92II	CATG	2 cut(s)	108, 431
KspAI	GTTAAC	1 cut(s)	375
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	4 cut(s)	61, 251, 289, 391
Lsp1109I	GCAGC	5 cut(s)	65, 154, 157, 160, 409
MaeII	ACGT	2 cut(s)	37, 58
MaeIII	GTNAC	3 cut(s)	33, 38, 356
MboII	GAAGA	4 cut(s)	212, 224, 242, 245
MhlI	GDGCHC	2 cut(s)	28, 249
MluCI	AATT	3 cut(s)	83, 109, 403
MnlI	CCTC	7 cut(s)	38, 111, 135, 165, 220, 229, 294
MroXI	GAANNNNTTC	1 cut(s)	83
MseI	TTAA	3 cut(s)	207, 374, 393
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	151
MspCI	CTTAAG	1 cut(s)	392
MwoI	GCNNNNNNNGC	3 cut(s)	59, 148, 394
NcoI	CCATGG	2 cut(s)	104, 427
NlaIII	CATG	2 cut(s)	108, 431
NlaIV	GGNNCC	3 cut(s)	25, 117, 336
NmuCI	GTSAC	2 cut(s)	33, 38
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	217, 323, 412, 423
PkrI	GCNGC	5 cut(s)	55, 144, 147, 150, 399
PmaCI	CACGTG	2 cut(s)	38, 59
PmlI	CACGTG	2 cut(s)	38, 59
Ppu21I	YACGTR	2 cut(s)	38, 59
PspCI	CACGTG	2 cut(s)	38, 59
PspN4I	GGNNCC	3 cut(s)	25, 117, 336
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	207, 374, 393
SatI	GCNGC	5 cut(s)	54, 143, 146, 149, 398
SduI	GDGCHC	2 cut(s)	28, 249
SetI	ASST	5 cut(s)	9, 40, 61, 380, 390
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	285, 392
SmoI	CTYRAG	2 cut(s)	285, 392
Sse9I	AATT	3 cut(s)	83, 109, 403
SsiI	CCGC	2 cut(s)	68, 151
StyI	CCWWGG	2 cut(s)	104, 427
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	2 cut(s)	40, 61
TasI	AATT	3 cut(s)	83, 109, 403
TfiI	GAWTC	4 cut(s)	217, 323, 412, 423
Tru1I	TTAA	3 cut(s)	207, 374, 393
Tru9I	TTAA	3 cut(s)	207, 374, 393
TscAI	CASTG	3 cut(s)	229, 325, 414
TseFI	GTSAC	2 cut(s)	33, 38
TseI	GCWGC	5 cut(s)	53, 142, 145, 148, 397
Tsp45I	GTSAC	2 cut(s)	33, 38
TspDTI	ATGAA	2 cut(s)	225, 315
TspRI	CASTG	3 cut(s)	229, 325, 414
Vha464I	CTTAAG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	83, 403
XmiI	GTMKAC	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.