Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014593

Physical Location & Seq

Genomic Coordinates Forward (+)

15046603 .. 15047576

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAAGTTTCGTCATGGGATGGAACCCTTTCGTCACGCGACTTCCAGGTTGCAGCACGTGCTTTGGCAGAGAACTGGAAGCAATACAACCCTGCCTTGCCTCCATGGACGTGGTTTCCTTGTCTTAAACAACCTTCTCGTCTCTCACAAGAGCAGGGCTACTTGTCATTGGAGAAGATATGCCCTGTTGGATCAAACAAGGAACATGAGGAGAAAGCTGTAGATGAAGAAGAGCTTGAGCCTGTTGATGATGCCACTCTTGTTGAGAGTAGTGGTTCTCAGGTGTGTTACTATGATTTCCATATAATATACAGCGATTCGTATCGAGTTCCTGTCCTGTATTTTCGTGGGTACTACATTGATGGACAACCTTTGGGATGGGATGAGATTGAAAAAGACTTACCTGTATGCTCATCGAAGGTGTTACTGGAATCGAAATGGACATTCATAACTCAGGAGGAGCATCCGCACTTGAATAGGCCATGGTACAAGCTGCATCCATGTGGGACTAGTGAGTGGATGAAGCTGCTTTTTCTTGGTGATGAATCTCTGGCTGAAAGAGGAGTAGCAGTTGAGCAATACTTGGTGTCATGGCTCTCAGTTGTTGGTCAAGTAGTTGGTCTTAGAATTCCTTTTGAAATGTTGAATCATCATAAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004839 GO:0006464 GO:0006807 GO:0006914 GO:0006950 GO:0006952 GO:0006995 GO:0007154 GO:0008150 GO:0008152 GO:0008641 GO:0009056 GO:0009267 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0009991 GO:0010506 GO:0010508 GO:0010638 GO:0016239 GO:0016241 GO:0016567 GO:0016874 GO:0016877 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033043 GO:0033059 GO:0033554 GO:0036211 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0043473 GO:0043476 GO:0043482 GO:0043562 GO:0044087 GO:0044088 GO:0044089 GO:0044090 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044267 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051128 GO:0051130 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0065007 GO:0070647 GO:0071496 GO:0071704 GO:0090549 GO:0098542 GO:1901564 GO:1902115 GO:1902117 GO:2000785 GO:2000786

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

Autophagy_act_C

Protein Analysis

221

Amino Acids

25.42

Weight (kDa)

4.87

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Autophagy_act_C	PF03987	15 - 211	8.7e-46	Autophagocytosis associated protein, active-site domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07525 AT3G07525
fragaria_vesca	FvH4_2g17490
malus_domestica	MD05G1153700.v1.1 MD10G1148000.v1.1
prunus_persica	Prupe.8G187100_v2.0.a1
pyrus_communis	pycom10g12810
rosa_chinensis	RchiOBHm_Chr6g0282211
rosa_laevigata	RLG00000012901
rosa_multiflora	Rmu_sc0011940.1_g000010 Rmu_sc0014549.1_g000006
rosa_roxburghii	Rroxscaffold_7G00186400
rosa_rugosa	Rorug06G0146200
rosa_samantha	Rh6AG259400 Rh6BG262700 Rh6CG261600
rosa_wichuraiana	Rw6G022440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	199
AcsI	RAATTY	1 cut(s)	627
AcvI	CACGTG	1 cut(s)	59
AfaI	GTAC	2 cut(s)	353, 488
AgsI	TTSAA	4 cut(s)	392, 475, 638, 646
AhlI	ACTAGT	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	4 cut(s)	218, 235, 493, 526
AluI	AGCT	4 cut(s)	218, 235, 493, 526
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	3 cut(s)	53, 493, 526
ApoI	RAATTY	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	551
BbrPI	CACGTG	1 cut(s)	59
BbvI	GCAGC	3 cut(s)	65, 480, 513
BccI	CCATC	3 cut(s)	14, 356, 372
BciT130I	CCWGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	146
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	3 cut(s)	54, 494, 527
BlsI	GCNGC	3 cut(s)	55, 495, 528
Bme1390I	CCNGG	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	111
BmiI	GGNNCC	1 cut(s)	25
BmrFI	CCNGG	1 cut(s)	47
BmsI	GCATC	3 cut(s)	241, 472, 505
BpuEI	CTTGAG	1 cut(s)	257
BsaAI	YACGTR	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	104, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bse1I	ACTGG	2 cut(s)	80, 432
Bse8I	GATNNNNATC	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	104, 482
BseGI	GGATG	6 cut(s)	25, 383, 388, 463, 496, 525
BseJI	GATNNNNATC	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	293, 467, 612
BseNI	ACTGG	2 cut(s)	80, 432
BseRI	GAGGAG	3 cut(s)	224, 473, 576
BseXI	GCAGC	3 cut(s)	65, 480, 513
Bsh1236I	CGCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	481
BslFI	GGGAC	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	481
Bsp143I	GATC	1 cut(s)	191
Bsp19I	CCATGG	2 cut(s)	104, 482
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	3 cut(s)	292, 466, 611
BspFNI	CGCG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	199
BspQI	GCTCTTC	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	80, 432
BssECI	CCNNGG	2 cut(s)	104, 482
BssMI	GATC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	104, 482
Bst2UI	CCWGG	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	59
BstDEI	CTNAG	4 cut(s)	279, 453, 598, 623
BstDSI	CCRYGG	2 cut(s)	104, 482
BstF5I	GGATG	6 cut(s)	25, 383, 388, 463, 496, 525
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	194
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	45
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	39
BstV1I	GCAGC	3 cut(s)	65, 480, 513
BstXI	CCANNNNNNTGG	1 cut(s)	111
BsuRI	GGCC	1 cut(s)	481
BtgI	CCRYGG	2 cut(s)	104, 482
BtrI	CACGTC	1 cut(s)	111
BtsCI	GGATG	6 cut(s)	25, 383, 388, 463, 496, 525
Csp6I	GTAC	2 cut(s)	352, 487
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	6 cut(s)	15, 105, 206, 483, 501, 591
CviJI	RGCY	9 cut(s)	159, 218, 235, 241, 481, 493, 526, 554, 595
CviKI_1	RGCY	9 cut(s)	159, 218, 235, 241, 481, 493, 526, 554, 595
CviQI	GTAC	2 cut(s)	352, 487
DdeI	CTNAG	4 cut(s)	279, 453, 598, 623
DpnI	GATC	1 cut(s)	193
DpnII	GATC	1 cut(s)	191
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	104, 482
Eco72I	CACGTG	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	2 cut(s)	104, 482
ErhI	CCWWGG	2 cut(s)	104, 482
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	6 cut(s)	18, 108, 209, 486, 504, 594
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	6 cut(s)	14, 104, 205, 482, 500, 590
Fnu4HI	GCNGC	3 cut(s)	54, 494, 527
FokI	GGATG	6 cut(s)	32, 390, 395, 450, 483, 532
Fsp4HI	GCNGC	3 cut(s)	54, 494, 527
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	3 cut(s)	54, 494, 527
HaeIII	GGCC	1 cut(s)	481
Hin1II	CATG	6 cut(s)	18, 108, 209, 486, 504, 594
HinfI	GANTC	4 cut(s)	317, 431, 545, 646
HphI	GGTGA	1 cut(s)	551
Hpy188III	TCNNGA	1 cut(s)	455
HpyAV	CCTTC	2 cut(s)	144, 412
HpyCH4IV	ACGT	2 cut(s)	58, 110
HpyCH4V	TGCA	2 cut(s)	53, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	4 cut(s)	279, 453, 598, 623
HpySE526I	ACGT	2 cut(s)	58, 110
Hsp92II	CATG	6 cut(s)	18, 108, 209, 486, 504, 594
Kzo9I	GATC	1 cut(s)	191
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	65, 480, 513
LweI	GCATC	3 cut(s)	241, 472, 505
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	58, 110
MaeIII	GTNAC	3 cut(s)	33, 287, 423
MalI	GATC	1 cut(s)	193
MboI	GATC	1 cut(s)	191
MboII	GAAGA	3 cut(s)	187, 239, 242
MluCI	AATT	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	169
MnlI	CCTC	4 cut(s)	111, 202, 451, 554
MroXI	GAANNNNTTC	1 cut(s)	28
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	2 cut(s)	109, 501
MspR9I	CCNGG	1 cut(s)	47
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	59
NcoI	CCATGG	2 cut(s)	104, 482
NdeII	GATC	1 cut(s)	191
NlaIII	CATG	6 cut(s)	18, 108, 209, 486, 504, 594
NlaIV	GGNNCC	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	28
PfeI	GAWTC	4 cut(s)	317, 431, 545, 646
PkrI	GCNGC	3 cut(s)	55, 495, 528
PmaCI	CACGTG	1 cut(s)	59
PmlI	CACGTG	1 cut(s)	59
Ppu21I	YACGTR	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	1 cut(s)	25
RsaI	GTAC	2 cut(s)	353, 488
RsaNI	GTAC	2 cut(s)	352, 487
RseI	CAYNNNNRTG	2 cut(s)	109, 501
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	3 cut(s)	54, 494, 527
Sau3AI	GATC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	47
SfaNI	GCATC	3 cut(s)	241, 472, 505
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	109, 501
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	1 cut(s)	627
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	1 cut(s)	45
StyI	CCWWGG	2 cut(s)	104, 482
TaiI	ACGT	2 cut(s)	61, 113
TaqI	TCGA	3 cut(s)	325, 416, 434
TasI	AATT	1 cut(s)	627
TfiI	GAWTC	4 cut(s)	317, 431, 545, 646
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	53, 493, 526
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	4 cut(s)	240, 436, 536, 558
XapI	RAATTY	1 cut(s)	627
XmnI	GAANNNNTTC	1 cut(s)	28
XspI	CTAG	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.