Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Forward (+)

2441565 .. 2444532

Gene Structure 2968 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGTTACATGTGTGACTTCTGTGGTGAACAAAGATCTATGGTGTACTGTCGATCCGATGCAGCTTGTTTGTGTCTCTCCTGTGACCGGAGTGTTCATTCCGCTAATGCATTGTCCAAACGACATTCTCGGACACTTGTCTGCGAGAGATGCAATGCTCAGCCTGCTACTGTCAGGTGTGTTGAAGAAAGGGTTTCACTCTGTCAAAACTGTGACTGGTCTGGCCACAACAACAGCAACAACAACAATTCTTCGTCTTCTTCTACTTCGCCGCAGCAGCATAAGAGGCAAACCATAAGTTGCTATTCGGGTTGCCCTTCCAGCTCAGAACTCGCTTCCATTTGGTCTTTCTGTTTGGACTTAGCTGGACAATCTATTTGTGAACAAGAACTGGGTATGATGAATATAGACGATGATGGTCCTACCGACAAGAAAACTTGTAATGAGGATAAGAAAGATGTCTTGGTTGGATCCTCTTCAATTCCTGAAACCAGTTCTGTACCACAAGGAAAATCATCTTCTGCTAAGGATGTTGGAATGTGTGAAGATGACTTCTACGGGAACCTTGGTATGGATGAAGTTGACATGGCACTTGAGAACTATGAAGAACTCTTTGGTACCGCCTTTAACCCCTCTGAAGAGCTATTCGGGCATGGTGGAATCGATAGCCTTTTCCATAAGCACCAAACAGCTCCAGAGGGAGGGAATTCGGTGCAGCCAGCAGGCAGTAATGATTCGTTCATGAGTTCGAAAACTGAGCCAATAATTTGCTTCGCATCGAAGCCAGCACATTCGAACATATCCTTCTCTGGAGTCACTGGAGAAAGTAGTGCTGGAGATTTCCAAGAATGTGGTGCATCATCTTCCATACAGCTCTCGGGGGAGCCACCATGGTATCCTCCAACATTACAGGATAACAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCGTTACAAGGAGAAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATGCTTCCCGCAAAGCAAGAGCTGATGTGAGACGGCGTGTAAAGGGGCGATTTGTCAAAGCTGGTGAAGCTTATGATTACGACCCTCTCACCCCAACCAGAAGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

372

Amino Acids

40.75

Weight (kDa)

5.89

Isoelectric Point (pI)

63.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	47 - 80	2.6e-06	ANCHR-like B-box zinc-binding domain
CCT	PF06203	315 - 357	4.7e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AciI	CCGC	4 cut(s)	102, 272, 621, 1018
AclWI	GGATC	3 cut(s)	48, 465, 478
AcoI	YGGCCR	1 cut(s)	223
AcsI	RAATTY	1 cut(s)	706
AcuI	CTGAAG	1 cut(s)	657
AfaI	GTAC	3 cut(s)	47, 501, 619
AfiI	CCNNNNNNNGG	3 cut(s)	87, 571, 701
AflIII	ACRYGT	1 cut(s)	9
AgsI	TTSAA	2 cut(s)	185, 480
AjuI	GAANNNNNNNTTGG	4 cut(s)	446, 478, 597, 629
AluBI	AGCT	9 cut(s)	65, 324, 365, 643, 692, 874, 1031, 1070, 1079
AluI	AGCT	9 cut(s)	65, 324, 365, 643, 692, 874, 1031, 1070, 1079
Alw26I	GTCTC	2 cut(s)	80, 1033
AlwI	GGATC	3 cut(s)	48, 465, 478
Ama87I	CYCGRG	1 cut(s)	877
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	62, 274, 277, 715
ApoI	RAATTY	1 cut(s)	706
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
Asp718I	GGTACC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	3 cut(s)	38, 1085, 1090
AsuII	TTCGAA	2 cut(s)	749, 794
AvaI	CYCGRG	1 cut(s)	877
AvaII	GGWCC	1 cut(s)	419
BaeI	ACNNNNGTAYC	2 cut(s)	878, 911
BalI	TGGCCA	1 cut(s)	225
BamHI	GGATCC	1 cut(s)	470
BanI	GGYRCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	4 cut(s)	74, 286, 289, 727
BccI	CCATC	1 cut(s)	410
BceAI	ACGGC	1 cut(s)	1058
BciVI	GTATCC	1 cut(s)	906
BcoDI	GTCTC	2 cut(s)	80, 1033
BfuI	GTATCC	1 cut(s)	906
BglII	AGATCT	1 cut(s)	35
BisI	GCNGC	5 cut(s)	63, 272, 275, 278, 716
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	5 cut(s)	64, 273, 276, 279, 717
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	4 cut(s)	472, 563, 619, 885
BmrI	ACTGGG	1 cut(s)	401
BmsI	GCATC	4 cut(s)	49, 140, 785, 866
BmuI	ACTGGG	1 cut(s)	401
BoxI	GACNNNNGTC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	249
BpmI	CTGGAG	4 cut(s)	678, 831, 840, 855
Bpu10I	CCTNAGC	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	159
Bpu14I	TTCGAA	2 cut(s)	749, 794
BpuEI	CTTGAG	1 cut(s)	614
Bsa29I	ATCGAT	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	565, 890
BsaWI	WCCGGW	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 571, 701
Bse1I	ACTGG	4 cut(s)	221, 396, 492, 823
Bse3DI	GCAATG	1 cut(s)	160
BseCI	ATCGAT	1 cut(s)	663
BseDI	CCNNGG	2 cut(s)	565, 890
BseGI	GGATG	2 cut(s)	535, 580
BseLI	CCNNNNNNNGG	3 cut(s)	87, 571, 701
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	173, 339, 747
BseNI	ACTGG	4 cut(s)	221, 396, 492, 823
BseXI	GCAGC	4 cut(s)	74, 286, 289, 727
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	617
BshVI	ATCGAT	1 cut(s)	663
BsiHKCI	CYCGRG	1 cut(s)	877
BsiSI	CCGG	1 cut(s)	88
BslI	CCNNNNNNNGG	3 cut(s)	87, 571, 701
BsmAI	GTCTC	2 cut(s)	80, 1033
BsmBI	CGTCTC	1 cut(s)	1033
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	877
Bsp119I	TTCGAA	2 cut(s)	749, 794
Bsp143I	GATC	3 cut(s)	35, 53, 470
Bsp1720I	GCTNAGC	1 cut(s)	159
Bsp19I	CCATGG	1 cut(s)	890
BspACI	CCGC	4 cut(s)	102, 272, 621, 1018
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	3 cut(s)	172, 338, 748
BspDI	ATCGAT	1 cut(s)	663
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	4 cut(s)	472, 563, 619, 885
BspPI	GGATC	3 cut(s)	48, 465, 478
BspQI	GCTCTTC	1 cut(s)	633
BspT104I	TTCGAA	2 cut(s)	749, 794
BspT107I	GGYRCC	1 cut(s)	617
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	221, 396, 492, 823
BssECI	CCNNGG	2 cut(s)	565, 890
BssMI	GATC	3 cut(s)	35, 53, 470
BssT1I	CCWWGG	2 cut(s)	565, 890
Bst4CI	ACNGT	3 cut(s)	50, 172, 212
Bst6I	CTCTTC	2 cut(s)	481, 633
BstBI	TTCGAA	2 cut(s)	749, 794
BstC8I	GCNNGC	6 cut(s)	165, 720, 724, 786, 925, 985
BstDEI	CTNAG	5 cut(s)	159, 325, 361, 525, 756
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	2 cut(s)	535, 580
BstKTI	GATC	3 cut(s)	38, 56, 473
BstMAI	GTCTC	2 cut(s)	80, 1033
BstMBI	GATC	3 cut(s)	35, 53, 470
BstMWI	GCNNNNNNNGC	7 cut(s)	150, 164, 277, 286, 321, 649, 1076
BstNSI	RCATGY	1 cut(s)	13
BstPAI	GACNNNNGTC	1 cut(s)	137
BstV1I	GCAGC	4 cut(s)	74, 286, 289, 727
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	35, 470
BstXI	CCANNNNNNTGG	1 cut(s)	851
BstYI	RGATCY	2 cut(s)	35, 470
Bsu15I	ATCGAT	1 cut(s)	663
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	663
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	2 cut(s)	535, 580
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	6 cut(s)	165, 720, 724, 786, 925, 985
CciI	TCATGA	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	419
ClaI	ATCGAT	1 cut(s)	663
Csp6I	GTAC	3 cut(s)	46, 500, 618
CviAII	CATG	5 cut(s)	10, 586, 653, 742, 891
CviQI	GTAC	3 cut(s)	46, 500, 618
DdeI	CTNAG	5 cut(s)	159, 325, 361, 525, 756
DpnI	GATC	3 cut(s)	37, 55, 472
DpnII	GATC	3 cut(s)	35, 53, 470
EaeI	YGGCCR	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	481, 633
EarI	CTCTTC	2 cut(s)	481, 633
Eco130I	CCWWGG	2 cut(s)	565, 890
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	877
EcoRI	GAATTC	1 cut(s)	706
EcoT14I	CCWWGG	2 cut(s)	565, 890
EcoT22I	ATGCAT	1 cut(s)	112
ErhI	CCWWGG	2 cut(s)	565, 890
Esp3I	CGTCTC	1 cut(s)	1033
FaeI	CATG	5 cut(s)	13, 589, 656, 745, 894
FatI	CATG	5 cut(s)	9, 585, 652, 741, 890
FauI	CCCGC	1 cut(s)	1025
Fnu4HI	GCNGC	5 cut(s)	63, 272, 275, 278, 716
FokI	GGATG	2 cut(s)	542, 587
Fsp4HI	GCNGC	5 cut(s)	63, 272, 275, 278, 716
GluI	GCNGC	5 cut(s)	63, 272, 275, 278, 716
GsuI	CTGGAG	4 cut(s)	678, 831, 840, 855
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	88
Hin1II	CATG	5 cut(s)	13, 589, 656, 745, 894
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HindIII	AAGCTT	1 cut(s)	1077
HinfI	GANTC	3 cut(s)	660, 734, 813
HpaII	CCGG	1 cut(s)	88
HphI	GGTGA	3 cut(s)	38, 1085, 1090
Hpy166II	GTNNAC	4 cut(s)	29, 46, 383, 583
Hpy188I	TCNGA	4 cut(s)	58, 132, 328, 637
Hpy188III	TCNNGA	4 cut(s)	485, 695, 742, 810
Hpy8I	GTNNAC	4 cut(s)	29, 46, 383, 583
HpyAV	CCTTC	3 cut(s)	327, 814, 973
HpyCH4III	ACNGT	3 cut(s)	50, 172, 212
HpyCH4V	TGCA	5 cut(s)	62, 110, 153, 715, 857
HpyF10VI	GCNNNNNNNGC	7 cut(s)	150, 164, 277, 286, 321, 649, 1076
HpyF3I	CTNAG	5 cut(s)	159, 325, 361, 525, 756
Hsp92II	CATG	5 cut(s)	13, 589, 656, 745, 894
KpnI	GGTACC	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	35, 53, 470
LguI	GCTCTTC	1 cut(s)	633
LmnI	GCTCC	2 cut(s)	697, 883
Lsp1109I	GCAGC	4 cut(s)	74, 286, 289, 727
LweI	GCATC	4 cut(s)	49, 140, 785, 866
MaeIII	GTNAC	7 cut(s)	5, 14, 83, 212, 814, 937, 962
MalI	GATC	3 cut(s)	37, 55, 472
MboI	GATC	3 cut(s)	35, 53, 470
MflI	RGATCY	2 cut(s)	35, 470
MlsI	TGGCCA	1 cut(s)	225
MluCI	AATT	4 cut(s)	247, 480, 706, 765
MluNI	TGGCCA	1 cut(s)	225
MlyI	GAGTC	1 cut(s)	822
MmeI	TCCRAC	3 cut(s)	448, 514, 926
MnlI	CCTC	9 cut(s)	279, 439, 484, 643, 691, 695, 909, 999, 1104
Mox20I	TGGCCA	1 cut(s)	225
Mph1103I	ATGCAT	1 cut(s)	112
MscI	TGGCCA	1 cut(s)	225
MseI	TTAA	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	225
MspI	CCGG	1 cut(s)	88
MwoI	GCNNNNNNNGC	7 cut(s)	150, 164, 277, 286, 321, 649, 1076
NcoI	CCATGG	1 cut(s)	890
NdeII	GATC	3 cut(s)	35, 53, 470
NlaIII	CATG	5 cut(s)	13, 589, 656, 745, 894
NlaIV	GGNNCC	4 cut(s)	472, 563, 619, 885
NmuCI	GTSAC	4 cut(s)	14, 83, 212, 814
NsiI	ATGCAT	1 cut(s)	112
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	2 cut(s)	749, 794
PagI	TCATGA	1 cut(s)	741
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	660, 734
PkrI	GCNGC	5 cut(s)	64, 273, 276, 279, 717
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PscI	ACATGT	1 cut(s)	9
PshAI	GACNNNNGTC	1 cut(s)	137
PspN4I	GGNNCC	4 cut(s)	472, 563, 619, 885
PspPI	GGNCC	1 cut(s)	419
PsuI	RGATCY	2 cut(s)	35, 470
RsaI	GTAC	3 cut(s)	47, 501, 619
RsaNI	GTAC	3 cut(s)	46, 500, 618
SapI	GCTCTTC	1 cut(s)	633
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	5 cut(s)	63, 272, 275, 278, 716
Sau3AI	GATC	3 cut(s)	35, 53, 470
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	822
SfaNI	GCATC	4 cut(s)	49, 140, 785, 866
SfuI	TTCGAA	2 cut(s)	749, 794
SinI	GGWCC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	4 cut(s)	247, 480, 706, 765
SsiI	CCGC	4 cut(s)	102, 272, 621, 1018
StyI	CCWWGG	2 cut(s)	565, 890
TaaI	ACNGT	3 cut(s)	50, 172, 212
TaqI	TCGA	5 cut(s)	52, 663, 749, 779, 794
TasI	AATT	4 cut(s)	247, 480, 706, 765
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	660, 734
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	4 cut(s)	14, 83, 212, 814
TseI	GCWGC	4 cut(s)	62, 274, 277, 715
Tsp45I	GTSAC	4 cut(s)	14, 83, 212, 814
TspDTI	ATGAA	5 cut(s)	86, 416, 591, 618, 730
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	706
XceI	RCATGY	1 cut(s)	13
Zsp2I	ATGCAT	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.