Rorug02G0448300

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
57543042 .. 57544929
1888 bp
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UTR
Exon/CDS
Intron
Rorug02G0448300.1

Sequence Viewer

Length: 234 bp
ATGCTAAAAGATTTTGTTTGCCTTGTAAATCATGTTTCAAATGCTTTGTACAGGTCATATTGGGAGACAAGGGATTTGCAGCTGTTTGCTTCATTGTTTTTTTTCTTGCAGTCTTCTATTCCCAATACACTGCATTCATTGGTGAAATTGGACTACGTGGTGAACTTCACTCGGTGGAAGTTCTTTTGGCGGTTGTCAATTGAGTTGCAAACACCATCAGTGCTTTCGCAATAA

Protein Analysis

77

Amino Acids

9.25

Weight (kDa)

8.98

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 190
AdeI CACNNNGTG 1 cut(s) 174
AfaI GTAC 1 cut(s) 50
AgsI TTSAA 1 cut(s) 39
AluBI AGCT 1 cut(s) 82
AluI AGCT 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 59
ApeKI GCWGC 1 cut(s) 79
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AsuHPI GGTGA 2 cut(s) 154, 172
BbsI GAAGAC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 91
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 157
BseXI GCAGC 1 cut(s) 91
BsmAI GTCTC 1 cut(s) 59
BsmI GAATGC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 48
BspACI CCGC 1 cut(s) 190
BsrGI TGTACA 1 cut(s) 48
BstAUI TGTACA 1 cut(s) 48
BstBAI YACGTR 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 91
BstV2I GAAGAC 1 cut(s) 105
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 225
Csp6I GTAC 1 cut(s) 49
CviAII CATG 1 cut(s) 32
CviJI RGCY 1 cut(s) 82
CviKI_1 RGCY 1 cut(s) 82
CviQI GTAC 1 cut(s) 49
DraIII CACNNNGTG 1 cut(s) 174
FaeI CATG 1 cut(s) 35
FaiI YATR 2 cut(s) 33, 58
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
Hin1II CATG 1 cut(s) 35
HphI GGTGA 2 cut(s) 154, 172
Hpy166II GTNNAC 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 4 cut(s) 79, 109, 133, 208
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 1 cut(s) 35
LpnPI CCDG 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 91
MaeII ACGT 1 cut(s) 156
MboII GAAGA 1 cut(s) 105
MfeI CAATTG 1 cut(s) 198
MluCI AATT 2 cut(s) 146, 198
MspA1I CMGCKG 1 cut(s) 82
MunI CAATTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 35
PctI GAATGC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 157
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
SatI GCNGC 1 cut(s) 80
SetI ASST 3 cut(s) 56, 84, 159
SgeI CNNG 7 cut(s) 35, 44, 64, 81, 118, 169, 183
Sse9I AATT 2 cut(s) 146, 198
SsiI CCGC 1 cut(s) 190
TaiI ACGT 1 cut(s) 159
TasI AATT 2 cut(s) 146, 198
TatI WGTACW 1 cut(s) 48
TscAI CASTG 2 cut(s) 135, 225
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 81, 126
TspRI CASTG 2 cut(s) 135, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.