Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Reverse (-)

10140517 .. 10144182

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1131800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGGTTACATGTGTGATTTCTGCGGGAATCAAAGGTCCATGGTGTACTGCCGGTCTGATGATGCATGCTTGTGTTTATCGTGTGATAGAAATGTCCACTCTGCAAATGCCCTCTCTAGGCGTCACTCGAGAGCACTTATTTGCGATAGATGCAATTCGCAACCCGCATTTGTAAGATGCACAGAAGAGAGAATGTCTCTTTGTCAGAATTGTGATTTGATGGCTCACGAAACATCGACCTCAGCTTCCATGCATAAGAGGCAGACACTTAATTGTTACAATGGTTGCCCATCGTCTGCCGAACTGTCGTCCATCTGGTCATTCGTATCAGAATTACCTTCCAACGGAGAATCTGCCTGCGAGCAGGAAATGGGATTGATGAGCATCGCTGACAACAGCACCGCAACTGATTGGAACCAAAGTGAAAGTAACACCAGGCAAAATGCATCCGGTGCAGATGAAGTGAATGCTGCGCATTCCATGCATAAGTCTGGTGTTCTGGTTGGTTCCCCTTCGTTGCCTGAACGTAATCATGCTCGTCATGTTGTTGGCCAGCTGTCTGGATCTGTGAATGCTTCATTGCCCAAGCTCTACTCTCATGGGCCCAAAGGTTCTGGACTCCCTGAAGATGATGACCTTTATGATGGTTTCGATATGGATGAAATGGATTTGAATCTTGAAAATTATGACGAACTGTTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAAGAATGGTGGGATTGATAGCTTGTTTGGGGCAAGGAACATGTGCAGGAATTATCAAGATGCGGTTGCTGCTGAGGGGTCTTCAGTTGGACTGGGAAATACACCGCAGCCAGCGTGCAGTAACGCGGCATCTGCTGATTCTGTAATGAGTAGGAAAACTGACCCAATTATTTGCTTTCCGGCAAAACAAGCACATTCAAACCTTTCATTTTCGGGCGTTACTGGAGAGAGTAGTGCTGGTGATTGTCAAGATTGTGGGGCTTCCTCAATGCTTCTCATGGGAGAGCCGCCATGGTGTCCTCCTTGCCCTGAGAGTTCCATGCAATCGGCTAACCGTAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGAGAAAAGGGTGAGGTATGCTTCTCGCAAAGCAAGGGCCGATGTAAGAAAGCGTGTGAAGGGCCGCTTCATTAAAGCTGGTGAAGCTTATGATTACGACCCCTTGAACCAGGCCAGAACCAGAAGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

416

Amino Acids

45.37

Weight (kDa)

6.14

Isoelectric Point (pI)

58.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCT	PF06203	356 - 398	5.8e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	474
AccII	CGCG	1 cut(s)	857
AciI	CCGC	8 cut(s)	24, 165, 402, 794, 836, 857, 1019, 1180
AclWI	GGATC	1 cut(s)	571
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	3 cut(s)	645, 741, 798
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	117, 344
AflIII	ACRYGT	2 cut(s)	9, 771
AgsI	TTSAA	5 cut(s)	673, 680, 733, 930, 1222
AjnI	CCWGG	2 cut(s)	434, 1224
AluBI	AGCT	8 cut(s)	245, 556, 589, 727, 753, 1193, 1202, 1242
AluI	AGCT	8 cut(s)	245, 556, 589, 727, 753, 1193, 1202, 1242
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	571
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	5 cut(s)	550, 602, 1152, 1177, 1227
ApaI	GGGCCC	1 cut(s)	606
ApeKI	GCWGC	3 cut(s)	470, 800, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	5 cut(s)	36, 602, 603, 1152, 1177
AsuHPI	GGTGA	3 cut(s)	983, 1138, 1208
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	606
BalI	TGGCCA	1 cut(s)	552
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	136
BbvCI	CCTCAGC	2 cut(s)	241, 804
BbvI	GCAGC	3 cut(s)	457, 787, 850
BccI	CCATC	4 cut(s)	214, 298, 320, 638
BciT130I	CCWGG	2 cut(s)	436, 1226
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	117
BisI	GCNGC	6 cut(s)	471, 801, 839, 858, 1019, 1180
BlsI	GCNGC	6 cut(s)	472, 802, 840, 859, 1020, 1181
Bme1390I	CCNGG	2 cut(s)	436, 1226
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	127
BmgT120I	GGNCC	5 cut(s)	36, 602, 603, 1152, 1177
BmiI	GGNNCC	3 cut(s)	416, 508, 604
BmrFI	CCNGG	2 cut(s)	436, 1226
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	7 cut(s)	52, 140, 167, 393, 455, 781, 869
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	1 cut(s)	804
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	2 cut(s)	241, 804
BsaBI	GATNNNNATC	2 cut(s)	383, 672
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	2 cut(s)	39, 1022
BsaWI	WCCGGW	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 344
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	828, 958
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	2 cut(s)	383, 672
BseBI	CCWGG	2 cut(s)	436, 1226
BseDI	CCNNGG	2 cut(s)	39, 1022
BseGI	GGATG	2 cut(s)	446, 664
BseJI	GATNNNNATC	2 cut(s)	383, 672
BseLI	CCNNNNNNNGG	2 cut(s)	117, 344
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	3 cut(s)	255, 795, 1032
BseNI	ACTGG	2 cut(s)	828, 958
BseSI	GKGCMC	1 cut(s)	606
BseXI	GCAGC	3 cut(s)	457, 787, 850
BsgI	GTGCAG	3 cut(s)	474, 796, 868
Bsh1236I	CGCG	1 cut(s)	857
BshFI	GGCC	5 cut(s)	552, 604, 1154, 1179, 1229
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	52, 450, 911
BslI	CCNNNNNNNGG	2 cut(s)	117, 344
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	3 cut(s)	472, 475, 577
BsnI	GGCC	5 cut(s)	552, 604, 1154, 1179, 1229
BsoBI	CYCGRG	1 cut(s)	127
Bsp120I	GGGCCC	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	136, 606
Bsp143I	GATC	1 cut(s)	563
Bsp19I	CCATGG	2 cut(s)	39, 1022
BspACI	CCGC	8 cut(s)	24, 165, 402, 794, 836, 857, 1019, 1180
BspANI	GGCC	5 cut(s)	552, 604, 1154, 1179, 1229
BspCNI	CTCAG	3 cut(s)	254, 796, 1033
BspFNI	CGCG	1 cut(s)	857
BspLI	GGNNCC	3 cut(s)	416, 508, 604
BspPI	GGATC	1 cut(s)	571
BspQI	GCTCTTC	1 cut(s)	717
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	828, 958
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	39, 1022
BssMI	GATC	1 cut(s)	563
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	2 cut(s)	39, 1022
Bst2UI	CCWGG	2 cut(s)	436, 1226
Bst4CI	ACNGT	3 cut(s)	306, 696, 1067
Bst6I	CTCTTC	2 cut(s)	180, 717
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	2 cut(s)	452, 481
BstC8I	GCNNGC	7 cut(s)	67, 358, 362, 554, 843, 847, 1108
BstDEI	CTNAG	3 cut(s)	241, 804, 1041
BstDSI	CCRYGG	2 cut(s)	39, 1022
BstF5I	GGATG	2 cut(s)	446, 664
BstFNI	CGCG	1 cut(s)	857
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	1 cut(s)	566
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	563
BstMWI	GCNNNNNNNGC	8 cut(s)	150, 259, 452, 481, 800, 863, 920, 1199
BstNI	CCWGG	2 cut(s)	436, 1226
BstNSI	RCATGY	3 cut(s)	13, 69, 775
BstSCI	CCNGG	2 cut(s)	434, 1224
BstSLI	GKGCMC	1 cut(s)	606
BstUI	CGCG	1 cut(s)	857
BstV1I	GCAGC	3 cut(s)	457, 787, 850
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	5 cut(s)	552, 604, 1154, 1179, 1229
BtgI	CCRYGG	2 cut(s)	39, 1022
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	446, 664
Cac8I	GCNNGC	7 cut(s)	67, 358, 362, 554, 843, 847, 1108
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	5 cut(s)	36, 602, 603, 1152, 1177
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	3 cut(s)	241, 804, 1041
DpnI	GATC	1 cut(s)	565
DpnII	GATC	1 cut(s)	563
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	180, 717
EarI	CTCTTC	2 cut(s)	180, 717
Eco130I	CCWWGG	2 cut(s)	39, 1022
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	3 cut(s)	645, 741, 798
Eco88I	CYCGRG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	434, 1224
EcoT14I	CCWWGG	2 cut(s)	39, 1022
EcoT22I	ATGCAT	4 cut(s)	67, 255, 448, 486
EcoT38I	GRGCYC	1 cut(s)	606
ErhI	CCWWGG	2 cut(s)	39, 1022
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FauI	CCCGC	2 cut(s)	17, 172
Fnu4HI	GCNGC	6 cut(s)	471, 801, 839, 858, 1019, 1180
FokI	GGATG	2 cut(s)	433, 671
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	6 cut(s)	471, 801, 839, 858, 1019, 1180
FspBI	CTAG	1 cut(s)	117
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	6 cut(s)	471, 801, 839, 858, 1019, 1180
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	5 cut(s)	552, 604, 1154, 1179, 1229
HapII	CCGG	3 cut(s)	52, 450, 911
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HindIII	AAGCTT	1 cut(s)	1200
HinfI	GANTC	5 cut(s)	28, 350, 618, 673, 869
HpaII	CCGG	3 cut(s)	52, 450, 911
HphI	GGTGA	3 cut(s)	983, 1138, 1208
Hpy166II	GTNNAC	2 cut(s)	46, 97
Hpy188I	TCNGA	4 cut(s)	58, 207, 331, 721
Hpy188III	TCNNGA	8 cut(s)	129, 227, 561, 615, 677, 733, 788, 980
Hpy8I	GTNNAC	2 cut(s)	46, 97
HpyAV	CCTTC	4 cut(s)	348, 522, 1096, 1168
HpyCH4III	ACNGT	3 cut(s)	306, 696, 1067
HpyCH4IV	ACGT	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	8 cut(s)	150, 259, 452, 481, 800, 863, 920, 1199
HpyF3I	CTNAG	3 cut(s)	241, 804, 1041
HpySE526I	ACGT	1 cut(s)	526
Hsp92I	GRCGYC	1 cut(s)	121
HspAI	GCGC	1 cut(s)	473
Kzo9I	GATC	1 cut(s)	563
LguI	GCTCTTC	1 cut(s)	717
Lsp1109I	GCAGC	3 cut(s)	457, 787, 850
LweI	GCATC	7 cut(s)	52, 140, 167, 393, 455, 781, 869
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	526
MaeIII	GTNAC	7 cut(s)	5, 122, 275, 428, 851, 949, 1085
MalI	GATC	1 cut(s)	565
MboI	GATC	1 cut(s)	563
MboII	GAAGA	5 cut(s)	197, 638, 734, 804, 1111
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	2 cut(s)	136, 606
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	7 cut(s)	154, 208, 271, 332, 682, 781, 897
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	612
MmeI	TCCRAC	2 cut(s)	366, 799
MnlI	CCTC	7 cut(s)	122, 250, 252, 799, 1006, 1041, 1122
Mox20I	TGGCCA	1 cut(s)	552
Mph1103I	ATGCAT	4 cut(s)	67, 255, 448, 486
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	270, 1188
MslI	CAYNNNNRTG	1 cut(s)	70
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	3 cut(s)	52, 450, 911
MspR9I	CCNGG	2 cut(s)	436, 1226
Mva1269I	GAATGC	3 cut(s)	472, 475, 577
MvaI	CCWGG	2 cut(s)	436, 1226
MvnI	CGCG	1 cut(s)	857
MwoI	GCNNNNNNNGC	8 cut(s)	150, 259, 452, 481, 800, 863, 920, 1199
NcoI	CCATGG	2 cut(s)	39, 1022
NdeII	GATC	1 cut(s)	563
NlaIV	GGNNCC	3 cut(s)	416, 508, 604
NmuCI	GTSAC	1 cut(s)	122
NsbI	TGCGCA	1 cut(s)	474
NsiI	ATGCAT	4 cut(s)	67, 255, 448, 486
NspI	RCATGY	3 cut(s)	13, 69, 775
PaeI	GCATGC	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	127
PciI	ACATGT	2 cut(s)	9, 771
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	3 cut(s)	472, 475, 577
PfeI	GAWTC	4 cut(s)	28, 350, 673, 869
PkrI	GCNGC	6 cut(s)	472, 802, 840, 859, 1020, 1181
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PscI	ACATGT	2 cut(s)	9, 771
Psp6I	CCWGG	2 cut(s)	434, 1224
PspGI	CCWGG	2 cut(s)	434, 1224
PspN4I	GGNNCC	3 cut(s)	416, 508, 604
PspOMI	GGGCCC	1 cut(s)	602
PspPI	GGNCC	5 cut(s)	36, 602, 603, 1152, 1177
PsuI	RGATCY	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	270, 1188
SatI	GCNGC	6 cut(s)	471, 801, 839, 858, 1019, 1180
Sau3AI	GATC	1 cut(s)	563
Sau96I	GGNCC	5 cut(s)	36, 602, 603, 1152, 1177
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	2 cut(s)	436, 1226
SduI	GDGCHC	2 cut(s)	136, 606
SfaNI	GCATC	7 cut(s)	52, 140, 167, 393, 455, 781, 869
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	127
SmiMI	CAYNNNNRTG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	7 cut(s)	154, 208, 271, 332, 682, 781, 897
SsiI	CCGC	8 cut(s)	24, 165, 402, 794, 836, 857, 1019, 1180
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	434, 1224
StyI	CCWWGG	2 cut(s)	39, 1022
TaaI	ACNGT	3 cut(s)	306, 696, 1067
TaiI	ACGT	1 cut(s)	529
TaqI	TCGA	3 cut(s)	128, 236, 651
TasI	AATT	7 cut(s)	154, 208, 271, 332, 682, 781, 897
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	3 cut(s)	860, 1021, 1182
TfiI	GAWTC	4 cut(s)	28, 350, 673, 869
Tru1I	TTAA	2 cut(s)	270, 1188
Tru9I	TTAA	2 cut(s)	270, 1188
TseFI	GTSAC	1 cut(s)	122
TseI	GCWGC	3 cut(s)	470, 800, 838
Tsp45I	GTSAC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	474, 567, 675, 927, 1174
TspGWI	ACGGA	1 cut(s)	360
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	3 cut(s)	13, 69, 775
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	4 cut(s)	67, 255, 448, 486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.