RLG00000020847

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
69416764 .. 69421596
4833 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020847

Sequence Viewer

Length: 1380 bp
ATGAGGTCGTGCGGCCAGGCTTTGAGGGTGTTAGAGTTTCTGCAGATCAGTTTTTTAGTGAAACCCAAAATCCCAAAGCTGTCTGCAGATCTTATCCCATCTCTCTCCCTCTCTCTCTCTCTCCCTCCTGGTTGTAGTGAGAAATACTCAGCAGAATTGTGGTCCATGGTGTATTGCCGGTCTGATGCTGCTTGCTTGTGTTTATCATGTGACCGAAATGTCCACTCTGCTAATGCCTTGTCGAGGCGTCACTCGAGAACGCTTCTTTGCGAAAGATGCAATTCACAACCAGCATTAGTAAGATGTGCAGAAGAGAGAGTGTCTCTCTGTCAGAATTGTGATTGGATGGGTCATGGTGCATCTACTTCAGCTGCATCACACAAGAGGCAAACACTCAATTGTTACTCTGGCTGCCCATCAGCTTCTGAACTGTCGTCTATCTGGTCATTCGTTCTAGAGTTACCTTCCGCAGCTGCGGGTGAATCTGCTTGTGAGCAGGAAATGGGGTTGATGAGCATTGCCGAGAACAGCACTGGAAGTGCTTGGAGTCCCCCAGAAAATAACACCAGAGAGAATGCATCTGATAAATTTGAAGTCAGTGACGTGGGTGCCATGGATAAGTCTGATGGTTTAGTTGGTTCCTCTTCGGTGCCTGCACTTAACTCAGCTCCTCAGGTTGTTGGTCAGATGCCTGGATCTGCAATTTCTACATTGCCCAAGTTATACTGTCACGGAACCAAAAGCCCAGGGCTCTGTGAAGATGATGACCTTTATGGCGATTTTGATATGGATGAAATGGATCTGAATCTTGAAAATTATGACGAACTCTTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAAGAATGGTGGGATTGATAGTTTGTTTGGGGCAAAGAACATGTCCAGGGCTCAGGAATTAATTGCTGCTGAGGGGTCAGCAATTGGACGGGTAAATGCATTGCAGCAGCCAGCATGCAGTACCGCAGCATCTGCAGATTCTGTCATGAGTACAAAAACTGAACCAATTGTTTCTTTTGTGCCAAAGCAAGCACAGTCAAACCTTTCATTTTCGGGTGTCACTGGAGAGAGTAGTGCTGGAGATTGTCAAGATTGTGGGGCTTCCTCAATGCTACTCATGGGAGAACCTCCATGGTGTCCTCCAGGCCCTGAGAGTTCCTTCCAGTCTGCTAATCGAAGTAATGCGGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGAGAAAAGAGTGAGGTATGCTTCTCGCAAAGCAAGGGCAGATGTAAGAAAGCGTGTGAAAGGGCGGTTTATTAAAGCTGGCGAAGCTTATGATTATGACCCTTTGAACCAGGCCAGAACCAGAAGCTACTGA

Protein Analysis

460

Amino Acids

49.59

Weight (kDa)

5.98

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANCHR-like_BBOX PF22586 89 - 128 6.4e-06 ANCHR-like B-box zinc-binding domain
CCT PF06203 400 - 442 6.7e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AccB1I GGYRCC 2 cut(s) 608, 649
AciI CCGC 6 cut(s) 12, 468, 476, 987, 1208, 1312
AclWI GGATC 2 cut(s) 703, 807
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 2 cut(s) 351, 873
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 2 cut(s) 985, 1015
AfiI CCNNNNNNNGG 1 cut(s) 243
AflIII ACRYGT 1 cut(s) 903
AgsI TTSAA 4 cut(s) 593, 812, 865, 1354
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
AluBI AGCT 9 cut(s) 79, 371, 422, 473, 668, 859, 1325, 1334, 1374
AluI AGCT 9 cut(s) 79, 371, 422, 473, 668, 859, 1325, 1334, 1374
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 2 cut(s) 703, 807
AlwNI CAGNNNCTG 4 cut(s) 425, 995, 1004, 1172
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 13, 1168, 1359
ApeKI GCWGC 9 cut(s) 188, 371, 411, 470, 473, 929, 967, 970, 989
ApoI RAATTY 1 cut(s) 587
ArsI GACNNNNNNTTYG 4 cut(s) 812, 844, 890, 922
AseI ATTAAT 1 cut(s) 923
AspS9I GGNCC 2 cut(s) 162, 1169
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 162
AxyI CCTNAGG 1 cut(s) 672
BanI GGYRCC 2 cut(s) 608, 649
BanII GRGCYC 2 cut(s) 753, 916
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 9 cut(s) 175, 358, 398, 460, 482, 916, 979, 982, 1001
BccI CCATC 4 cut(s) 106, 340, 424, 620
BciT130I CCWGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
BcoDI GTCTC 1 cut(s) 327
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 3 cut(s) 41, 84, 996
BglII AGATCT 1 cut(s) 88
Bme1390I CCNGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 604
BmgT120I GGNCC 2 cut(s) 162, 1169
BmiI GGNNCC 4 cut(s) 610, 640, 651, 736
BmrFI CCNGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
BmsI GCATC 7 cut(s) 175, 266, 368, 383, 587, 678, 1001
BplI GAGNNNNNCTC 6 cut(s) 131, 163, 307, 339, 309, 341
BpmI CTGGAG 3 cut(s) 1107, 1122, 1149
Bpu10I CCTNAGC 2 cut(s) 915, 933
BsaBI GATNNNNATC 1 cut(s) 804
BsaHI GRCGYC 1 cut(s) 247
BsaJI CCNNGG 6 cut(s) 165, 612, 745, 746, 909, 1154
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse118I RCCGGY 1 cut(s) 177
Bse1I ACTGG 3 cut(s) 538, 1090, 1186
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 3 cut(s) 516, 710, 962
Bse8I GATNNNNATC 1 cut(s) 804
BseBI CCWGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
BseDI CCNNGG 6 cut(s) 165, 612, 745, 746, 909, 1154
BseGI GGATG 2 cut(s) 351, 796
BseJI GATNNNNATC 1 cut(s) 804
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 3 cut(s) 516, 710, 962
BseMII CTCAG 6 cut(s) 162, 678, 686, 924, 929, 1164
BseNI ACTGG 3 cut(s) 538, 1090, 1186
BseRI GAGGAG 1 cut(s) 660
BseXI GCAGC 9 cut(s) 175, 358, 398, 460, 482, 916, 979, 982, 1001
BsgI GTGCAG 2 cut(s) 327, 639
BshFI GGCC 3 cut(s) 15, 1170, 1361
BshNI GGYRCC 2 cut(s) 608, 649
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 1 cut(s) 178
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 327
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 1 cut(s) 580
BsnI GGCC 3 cut(s) 15, 1170, 1361
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 2 cut(s) 753, 916
Bsp143I GATC 4 cut(s) 45, 88, 695, 799
Bsp19I CCATGG 3 cut(s) 165, 612, 1154
BspACI CCGC 6 cut(s) 12, 468, 476, 987, 1208, 1312
BspANI GGCC 3 cut(s) 15, 1170, 1361
BspCNI CTCAG 6 cut(s) 161, 677, 685, 925, 928, 1165
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 4 cut(s) 610, 640, 651, 736
BspMAI CTGCAG 3 cut(s) 45, 88, 1000
BspPI GGATC 2 cut(s) 703, 807
BspQI GCTCTTC 1 cut(s) 849
BspT107I GGYRCC 2 cut(s) 608, 649
BsrDI GCAATG 3 cut(s) 516, 710, 962
BsrFI RCCGGY 1 cut(s) 177
BsrI ACTGG 3 cut(s) 538, 1090, 1186
BssAI RCCGGY 1 cut(s) 177
BssECI CCNNGG 6 cut(s) 165, 612, 745, 746, 909, 1154
BssMI GATC 4 cut(s) 45, 88, 695, 799
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 3 cut(s) 165, 612, 1154
Bst2UI CCWGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
Bst4CI ACNGT 3 cut(s) 432, 728, 1059
Bst6I CTCTTC 3 cut(s) 306, 649, 849
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 995
BstC8I GCNNGC 7 cut(s) 193, 654, 975, 979, 1053, 1240, 1327
BstDEI CTNAG 6 cut(s) 148, 664, 672, 915, 933, 1173
BstDSI CCRYGG 3 cut(s) 165, 612, 1154
BstENI CCTNNNNNAGG 1 cut(s) 241
BstF5I GGATG 2 cut(s) 351, 796
BstKTI GATC 4 cut(s) 48, 91, 698, 802
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 4 cut(s) 45, 88, 695, 799
BstMWI GCNNNNNNNGC 3 cut(s) 276, 995, 1331
BstNI CCWGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
BstNSI RCATGY 2 cut(s) 907, 981
BstSCI CCNGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
BstSFI CTRYAG 3 cut(s) 41, 84, 996
BstV1I GCAGC 9 cut(s) 175, 358, 398, 460, 482, 916, 979, 982, 1001
BstX2I RGATCY 3 cut(s) 88, 695, 799
BstYI RGATCY 3 cut(s) 88, 695, 799
Bsu36I CCTNAGG 1 cut(s) 672
BsuRI GGCC 3 cut(s) 15, 1170, 1361
BtgI CCRYGG 3 cut(s) 165, 612, 1154
BtrI CACGTC 1 cut(s) 604
BtsCI GGATG 2 cut(s) 351, 796
BtsIMutI CAGTG 3 cut(s) 531, 604, 1083
Cac8I GCNNGC 7 cut(s) 193, 654, 975, 979, 1053, 1240, 1327
CaiI CAGNNNCTG 4 cut(s) 425, 995, 1004, 1172
CciI TCATGA 1 cut(s) 1008
Cfr10I RCCGGY 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 162, 1169
CseI GACGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 984, 1014
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 9 cut(s) 166, 207, 353, 613, 904, 978, 1009, 1141, 1155
CviQI GTAC 2 cut(s) 984, 1014
DdeI CTNAG 6 cut(s) 148, 664, 672, 915, 933, 1173
DpnI GATC 4 cut(s) 47, 90, 697, 801
DpnII GATC 4 cut(s) 45, 88, 695, 799
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 3 cut(s) 306, 649, 849
EarI CTCTTC 3 cut(s) 306, 649, 849
Eco130I CCWWGG 3 cut(s) 165, 612, 1154
Eco24I GRGCYC 2 cut(s) 753, 916
Eco47I GGWCC 1 cut(s) 162
Eco57I CTGAAG 2 cut(s) 351, 873
Eco81I CCTNAGG 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 253
EcoNI CCTNNNNNAGG 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 1169
EcoRII CCWGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
EcoT14I CCWWGG 3 cut(s) 165, 612, 1154
EcoT22I ATGCAT 2 cut(s) 580, 964
EcoT38I GRGCYC 2 cut(s) 753, 916
ErhI CCWWGG 3 cut(s) 165, 612, 1154
FaeI CATG 9 cut(s) 169, 210, 356, 616, 907, 981, 1012, 1144, 1158
FaqI GGGAC 1 cut(s) 534
FatI CATG 9 cut(s) 165, 206, 352, 612, 903, 977, 1008, 1140, 1154
FauI CCCGC 1 cut(s) 469
FokI GGATG 2 cut(s) 358, 803
FriOI GRGCYC 2 cut(s) 753, 916
FspBI CTAG 1 cut(s) 455
GsuI CTGGAG 3 cut(s) 1107, 1122, 1149
HaeIII GGCC 3 cut(s) 15, 1170, 1361
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 9 cut(s) 169, 210, 356, 616, 907, 981, 1012, 1144, 1158
HindIII AAGCTT 1 cut(s) 1332
HinfI GANTC 4 cut(s) 482, 547, 805, 1001
HpaII CCGG 1 cut(s) 178
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 8 cut(s) 184, 333, 427, 583, 625, 687, 804, 853
Hpy188III TCNNGA 7 cut(s) 255, 455, 809, 865, 917, 1009, 1112
Hpy8I GTNNAC 1 cut(s) 223
HpyAV CCTTC 3 cut(s) 474, 1192, 1228
HpyCH4III ACNGT 3 cut(s) 432, 728, 1059
HpyCH4IV ACGT 1 cut(s) 603
HpyF10VI GCNNNNNNNGC 3 cut(s) 276, 995, 1331
HpyF3I CTNAG 6 cut(s) 148, 664, 672, 915, 933, 1173
HpySE526I ACGT 1 cut(s) 603
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 9 cut(s) 169, 210, 356, 616, 907, 981, 1012, 1144, 1158
Kzo9I GATC 4 cut(s) 45, 88, 695, 799
LguI GCTCTTC 1 cut(s) 849
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 9 cut(s) 175, 358, 398, 460, 482, 916, 979, 982, 1001
LweI GCATC 7 cut(s) 175, 266, 368, 383, 587, 678, 1001
MaeI CTAG 1 cut(s) 455
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 8 cut(s) 209, 248, 401, 459, 599, 728, 1081, 1217
MalI GATC 4 cut(s) 47, 90, 697, 801
MboI GATC 4 cut(s) 45, 88, 695, 799
MboII GAAGA 5 cut(s) 323, 636, 770, 866, 1243
MfeI CAATTG 3 cut(s) 397, 945, 1029
MflI RGATCY 3 cut(s) 88, 695, 799
MhlI GDGCHC 2 cut(s) 753, 916
MlyI GAGTC 1 cut(s) 556
Mph1103I ATGCAT 2 cut(s) 580, 964
MseI TTAA 3 cut(s) 660, 923, 1320
MspA1I CMGCKG 2 cut(s) 371, 473
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
MunI CAATTG 3 cut(s) 397, 945, 1029
Mva1269I GAATGC 1 cut(s) 580
MvaI CCWGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
MwoI GCNNNNNNNGC 3 cut(s) 276, 995, 1331
NcoI CCATGG 3 cut(s) 165, 612, 1154
NdeII GATC 4 cut(s) 45, 88, 695, 799
NlaIII CATG 9 cut(s) 169, 210, 356, 616, 907, 981, 1012, 1144, 1158
NlaIV GGNNCC 4 cut(s) 610, 640, 651, 736
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 5 cut(s) 209, 248, 599, 728, 1081
NsiI ATGCAT 2 cut(s) 580, 964
NspI RCATGY 2 cut(s) 907, 981
PaeI GCATGC 1 cut(s) 981
PaeR7I CTCGAG 1 cut(s) 253
PagI TCATGA 1 cut(s) 1008
PasI CCCWGGG 1 cut(s) 746
PciI ACATGT 1 cut(s) 903
PciSI GCTCTTC 1 cut(s) 849
PctI GAATGC 1 cut(s) 580
PfeI GAWTC 3 cut(s) 482, 805, 1001
PleI GAGTC 1 cut(s) 555
PpsI GAGTC 1 cut(s) 555
PscI ACATGT 1 cut(s) 903
PshBI ATTAAT 1 cut(s) 923
Psp6I CCWGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
PspGI CCWGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
PspN4I GGNNCC 4 cut(s) 610, 640, 651, 736
PspPI GGNCC 2 cut(s) 162, 1169
PstI CTGCAG 3 cut(s) 45, 88, 1000
PstNI CAGNNNCTG 4 cut(s) 425, 995, 1004, 1172
PsuI RGATCY 3 cut(s) 88, 695, 799
PvuII CAGCTG 2 cut(s) 371, 473
RsaI GTAC 2 cut(s) 985, 1015
RsaNI GTAC 2 cut(s) 984, 1014
SapI GCTCTTC 1 cut(s) 849
SaqAI TTAA 3 cut(s) 660, 923, 1320
Sau3AI GATC 4 cut(s) 45, 88, 695, 799
Sau96I GGNCC 2 cut(s) 162, 1169
SchI GAGTC 1 cut(s) 556
ScrFI CCNGG 7 cut(s) 17, 129, 693, 747, 910, 1167, 1358
SduI GDGCHC 2 cut(s) 753, 916
SfaNI GCATC 7 cut(s) 175, 266, 368, 383, 587, 678, 1001
SfcI CTRYAG 3 cut(s) 41, 84, 996
Sfr274I CTCGAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 162
SlaI CTCGAG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SphI GCATGC 1 cut(s) 981
SsiI CCGC 6 cut(s) 12, 468, 476, 987, 1208, 1312
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 7 cut(s) 15, 127, 691, 745, 908, 1165, 1356
StyI CCWWGG 3 cut(s) 165, 612, 1154
TaaI ACNGT 3 cut(s) 432, 728, 1059
TaiI ACGT 1 cut(s) 606
TaqI TCGA 3 cut(s) 242, 254, 1198
TaqII GACCGA 1 cut(s) 228
TatI WGTACW 1 cut(s) 1013
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 3 cut(s) 482, 805, 1001
Tru1I TTAA 3 cut(s) 660, 923, 1320
Tru9I TTAA 3 cut(s) 660, 923, 1320
TscAI CASTG 3 cut(s) 538, 604, 1090
TseFI GTSAC 5 cut(s) 209, 248, 599, 728, 1081
TseI GCWGC 9 cut(s) 188, 371, 411, 470, 473, 929, 967, 970, 989
Tsp45I GTSAC 5 cut(s) 209, 248, 599, 728, 1081
TspDTI ATGAA 2 cut(s) 807, 1059
TspGWI ACGGA 1 cut(s) 747
TspRI CASTG 3 cut(s) 538, 604, 1090
VpaK11BI GGWCC 1 cut(s) 162
VspI ATTAAT 1 cut(s) 923
XagI CCTNNNNNAGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 587
XbaI TCTAGA 1 cut(s) 454
XceI RCATGY 2 cut(s) 907, 981
XhoI CTCGAG 1 cut(s) 253
XspI CTAG 1 cut(s) 455
Zsp2I ATGCAT 2 cut(s) 580, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.