Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Reverse (-)

10361275 .. 10365005

Gene Structure 3731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1119500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGGTTACATGTGTGACTACTGCCAGGTTCAAAGGTCCATGGTGCACTGCCGGTCTGATGCGGCATGCTTGTGTTTATCGTGCGACAGAAATGTCCACTCCGCAAATGCCCTGTCTAGGCGTCACTTGAGAACACTTATTTGCGAAAGATGCAATTCACAGCCTGCATTAGTTAGATGCACAGAAGAGAGAGTGTCTCTTTGTCAGAATTGTGATTGGATGGGTCACCAAGCATCTACTTCAGCTTCTGGACATAAGAGGCAAACCCTCAACTGTTACTCCGGCTGCCCATCATCTGCCGAACTGTCGTCTATCTGGTCATTCGTATCAGATTTACCTTCTAACGGAGAATCTGCTTGCGAGCAGGAAATGGGATTGATGAGCATCGCTGAGAACAGCACCAGAAGTGAATGGAGCCAAACTGAAAGTAACACCAGGCAAAGTGCATCTGGTGCAGATGAAGTGAATCCTGCGCATTCCATGGAGAAGTCTGGTATTCTGGTTGGTTCCTCTTCGGTGCCTGAACGTAGTCATGCTCGTCATGTTGTTGGCCAGCTGTCCGGATCTGTAAATGCTTCATTGCCTAAGCTGTACTCTCATGGGGGCAAAGGTACTGGACTCCCTGAAGACGATGACCTTTATGATGATTTAGACATGGATGAAATGGAATTGAATCTTGAAAATTATGACGAACTGTTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAAGAACGGCGGGATTGATAGCTTGTTTGGGGCAAAGAACGTGTCCAGGGATTGTCAAGATGCGGTTGCTGCTGATGGGTCTTCATTTGGACTGGGAAATGCTCCACAGCCAGCGTGCAGTAACGCAGCATCTGCTGATTCTGTAATGAGTACGAAAACTGATCCAGTTATCTGCTTTCCAGCAAAACAAGCACATTCAAACCTTTCGTTTTCGGGCATCACTGGAGAGAGTAGTGCTGGTGATTGTCAAGATTGTGGAGCGTCCTCAACGCCATGGTATCCTCCTTGCCCTGAGAGTTCCATGCAGTCAGCTAACCGTAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGTTTGAGAAAAGGGTGAGGTATGCTTCTCGCAAAGCACGGGCTGATGTAAGAAAGCGTGTCAAGGGCCGCTTCATTAAAGCTGGTGAAGCTTATGACTATGACCCTTTGAACCAGGCCAGAACCAGAAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

410

Amino Acids

44.54

Weight (kDa)

6.15

Isoelectric Point (pI)

56.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	48 - 86	5.9e-06	ANCHR-like B-box zinc-binding domain
CCT	PF06203	350 - 392	5.7e-16	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	517
AccIII	TCCGGA	1 cut(s)	560
AciI	CCGC	5 cut(s)	62, 102, 741, 794, 1162
AclWI	GGATC	2 cut(s)	571, 887
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	3 cut(s)	225, 645, 741
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	3 cut(s)	593, 613, 883
AfiI	CCNNNNNNNGG	2 cut(s)	117, 344
AflIII	ACRYGT	2 cut(s)	9, 771
AgsI	TTSAA	6 cut(s)	32, 673, 680, 733, 930, 1204
AjnI	CCWGG	4 cut(s)	24, 434, 776, 1206
AluBI	AGCT	9 cut(s)	245, 556, 589, 727, 753, 1043, 1175, 1184, 1224
AluI	AGCT	9 cut(s)	245, 556, 589, 727, 753, 1043, 1175, 1184, 1224
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	201
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	2 cut(s)	571, 887
AlwNI	CAGNNNCTG	2 cut(s)	248, 863
Aor13HI	TCCGGA	1 cut(s)	560
AoxI	GGCC	3 cut(s)	550, 1159, 1209
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	285, 800, 857
ArsI	GACNNNNNNTTYG	6 cut(s)	98, 130, 680, 712, 758, 790
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	36, 1159
AsuHPI	GGTGA	4 cut(s)	218, 983, 1120, 1190
AvaII	GGWCC	1 cut(s)	36
BaeGI	GKGCMC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	517
BbsI	GAAGAC	2 cut(s)	633, 804
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	3 cut(s)	272, 787, 869
BccI	CCATC	3 cut(s)	214, 298, 800
BceAI	ACGGC	1 cut(s)	754
BciT130I	CCWGG	4 cut(s)	26, 436, 778, 1208
BciVI	GTATCC	1 cut(s)	1020
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	1 cut(s)	1020
BisI	GCNGC	5 cut(s)	63, 286, 801, 858, 1162
BlsI	GCNGC	5 cut(s)	64, 287, 802, 859, 1163
Bme1390I	CCNGG	4 cut(s)	26, 436, 778, 1208
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 1159
BmiI	GGNNCC	3 cut(s)	416, 508, 519
BmrFI	CCNGG	4 cut(s)	26, 436, 778, 1208
BmrI	ACTGGG	1 cut(s)	833
BmsI	GCATC	9 cut(s)	49, 140, 167, 242, 393, 455, 781, 869, 957
BmuI	ACTGGG	1 cut(s)	833
BpiI	GAAGAC	2 cut(s)	633, 804
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	1 cut(s)	975
Bpu10I	CCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	148
BsaBI	GATNNNNATC	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	4 cut(s)	39, 480, 777, 1004
BsaWI	WCCGGW	1 cut(s)	560
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 344
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	4 cut(s)	619, 828, 896, 958
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	1 cut(s)	383
BseAI	TCCGGA	1 cut(s)	560
BseBI	CCWGG	4 cut(s)	26, 436, 778, 1208
BseDI	CCNNGG	4 cut(s)	39, 480, 777, 1004
BseGI	GGATG	2 cut(s)	225, 664
BseJI	GATNNNNATC	1 cut(s)	383
BseLI	CCNNNNNNNGG	2 cut(s)	117, 344
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	2 cut(s)	381, 1014
BseNI	ACTGG	4 cut(s)	619, 828, 896, 958
BseSI	GKGCMC	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	272, 787, 869
BsgI	GTGCAG	2 cut(s)	474, 868
BshFI	GGCC	3 cut(s)	552, 1161, 1211
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	52, 282, 561
BslI	CCNNNNNNNGG	2 cut(s)	117, 344
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	3 cut(s)	552, 1161, 1211
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp13I	TCCGGA	1 cut(s)	560
Bsp143I	GATC	2 cut(s)	563, 892
Bsp19I	CCATGG	3 cut(s)	39, 480, 1004
BspACI	CCGC	5 cut(s)	62, 102, 741, 794, 1162
BspANI	GGCC	3 cut(s)	552, 1161, 1211
BspCNI	CTCAG	2 cut(s)	382, 1015
BspEI	TCCGGA	1 cut(s)	560
BspLI	GGNNCC	3 cut(s)	416, 508, 519
BspPI	GGATC	2 cut(s)	571, 887
BspQI	GCTCTTC	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	619, 828, 896, 958
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	4 cut(s)	39, 480, 777, 1004
BssMI	GATC	2 cut(s)	563, 892
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	3 cut(s)	39, 480, 1004
Bst2UI	CCWGG	4 cut(s)	26, 436, 778, 1208
Bst4CI	ACNGT	4 cut(s)	275, 306, 696, 1049
Bst6I	CTCTTC	3 cut(s)	180, 517, 717
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	2 cut(s)	452, 863
BstC8I	GCNNGC	8 cut(s)	67, 165, 358, 362, 554, 843, 847, 1090
BstDEI	CTNAG	3 cut(s)	390, 585, 1023
BstDSI	CCRYGG	3 cut(s)	39, 480, 1004
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	225, 664
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	566, 895
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	563, 892
BstMWI	GCNNNNNNNGC	6 cut(s)	150, 452, 800, 863, 920, 1181
BstNI	CCWGG	4 cut(s)	26, 436, 778, 1208
BstNSI	RCATGY	2 cut(s)	13, 69
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	4 cut(s)	24, 434, 776, 1206
BstSLI	GKGCMC	1 cut(s)	48
BstV1I	GCAGC	3 cut(s)	272, 787, 869
BstV2I	GAAGAC	2 cut(s)	633, 804
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuI	GTATCC	1 cut(s)	1020
BsuRI	GGCC	3 cut(s)	552, 1161, 1211
BtgI	CCRYGG	3 cut(s)	39, 480, 1004
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	2 cut(s)	225, 664
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 951
Cac8I	GCNNGC	8 cut(s)	67, 165, 358, 362, 554, 843, 847, 1090
CaiI	CAGNNNCTG	2 cut(s)	248, 863
CfoI	GCGC	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	36, 1159
CseI	GACGC	2 cut(s)	110, 981
Csp6I	GTAC	3 cut(s)	592, 612, 882
CviQI	GTAC	3 cut(s)	592, 612, 882
DdeI	CTNAG	3 cut(s)	390, 585, 1023
DpnI	GATC	2 cut(s)	565, 894
DpnII	GATC	2 cut(s)	563, 892
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	3 cut(s)	180, 517, 717
EarI	CTCTTC	3 cut(s)	180, 517, 717
Eco130I	CCWWGG	3 cut(s)	39, 480, 1004
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	3 cut(s)	225, 645, 741
Eco91I	GGTNACC	1 cut(s)	224
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	4 cut(s)	24, 434, 776, 1206
EcoT14I	CCWWGG	3 cut(s)	39, 480, 1004
ErhI	CCWWGG	3 cut(s)	39, 480, 1004
FalI	AAGNNNNNCTT	2 cut(s)	1148, 1180
FauI	CCCGC	1 cut(s)	734
Fnu4HI	GCNGC	5 cut(s)	63, 286, 801, 858, 1162
FokI	GGATG	2 cut(s)	232, 671
Fsp4HI	GCNGC	5 cut(s)	63, 286, 801, 858, 1162
FspBI	CTAG	1 cut(s)	117
FspI	TGCGCA	1 cut(s)	474
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	63, 286, 801, 858, 1162
GsuI	CTGGAG	1 cut(s)	975
HaeIII	GGCC	3 cut(s)	552, 1161, 1211
HapII	CCGG	3 cut(s)	52, 282, 561
HgaI	GACGC	2 cut(s)	110, 981
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HindIII	AAGCTT	1 cut(s)	1182
HinfI	GANTC	5 cut(s)	350, 466, 618, 673, 869
HpaII	CCGG	3 cut(s)	52, 282, 561
HphI	GGTGA	4 cut(s)	218, 983, 1120, 1190
Hpy166II	GTNNAC	2 cut(s)	46, 97
Hpy188I	TCNGA	4 cut(s)	58, 207, 331, 721
Hpy188III	TCNNGA	6 cut(s)	249, 561, 677, 733, 788, 980
Hpy8I	GTNNAC	2 cut(s)	46, 97
HpyAV	CCTTC	2 cut(s)	348, 1078
HpyCH4III	ACNGT	4 cut(s)	275, 306, 696, 1049
HpyCH4IV	ACGT	2 cut(s)	526, 771
HpyCH4V	TGCA	8 cut(s)	46, 153, 167, 180, 446, 455, 849, 1036
HpyF10VI	GCNNNNNNNGC	6 cut(s)	150, 452, 800, 863, 920, 1181
HpyF3I	CTNAG	3 cut(s)	390, 585, 1023
HpySE526I	ACGT	2 cut(s)	526, 771
Hsp92I	GRCGYC	1 cut(s)	121
HspAI	GCGC	1 cut(s)	473
Kpn2I	TCCGGA	1 cut(s)	560
Kzo9I	GATC	2 cut(s)	563, 892
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	3 cut(s)	414, 838, 989
Lsp1109I	GCAGC	3 cut(s)	272, 787, 869
LweI	GCATC	9 cut(s)	49, 140, 167, 242, 393, 455, 781, 869, 957
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	526, 771
MaeIII	GTNAC	8 cut(s)	5, 14, 122, 224, 275, 428, 851, 1067
MalI	GATC	2 cut(s)	565, 894
MboI	GATC	2 cut(s)	563, 892
MboII	GAAGA	6 cut(s)	197, 504, 638, 734, 804, 1093
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	4 cut(s)	154, 208, 668, 682
MluNI	TGGCCA	1 cut(s)	552
MlyI	GAGTC	1 cut(s)	612
MnlI	CCTC	6 cut(s)	252, 278, 520, 1006, 1023, 1104
Mox20I	TGGCCA	1 cut(s)	552
MroI	TCCGGA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	1 cut(s)	1170
MslI	CAYNNNNRTG	1 cut(s)	70
Msp20I	TGGCCA	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	3 cut(s)	52, 282, 561
MspR9I	CCNGG	4 cut(s)	26, 436, 778, 1208
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	4 cut(s)	26, 436, 778, 1208
MwoI	GCNNNNNNNGC	6 cut(s)	150, 452, 800, 863, 920, 1181
NcoI	CCATGG	3 cut(s)	39, 480, 1004
NdeII	GATC	2 cut(s)	563, 892
NlaIV	GGNNCC	3 cut(s)	416, 508, 519
NmuCI	GTSAC	3 cut(s)	14, 122, 224
NsbI	TGCGCA	1 cut(s)	474
NspI	RCATGY	2 cut(s)	13, 69
PaeI	GCATGC	1 cut(s)	69
PciI	ACATGT	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	717
PctI	GAATGC	1 cut(s)	475
PfeI	GAWTC	4 cut(s)	350, 466, 673, 869
PkrI	GCNGC	5 cut(s)	64, 287, 802, 859, 1163
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
PscI	ACATGT	1 cut(s)	9
Psp6I	CCWGG	4 cut(s)	24, 434, 776, 1206
PspEI	GGTNACC	1 cut(s)	224
PspGI	CCWGG	4 cut(s)	24, 434, 776, 1206
PspN4I	GGNNCC	3 cut(s)	416, 508, 519
PspPI	GGNCC	2 cut(s)	36, 1159
PstNI	CAGNNNCTG	2 cut(s)	248, 863
PsuI	RGATCY	1 cut(s)	563
PvuII	CAGCTG	1 cut(s)	556
RsaI	GTAC	3 cut(s)	593, 613, 883
RsaNI	GTAC	3 cut(s)	592, 612, 882
RseI	CAYNNNNRTG	1 cut(s)	70
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	1170
SatI	GCNGC	5 cut(s)	63, 286, 801, 858, 1162
Sau3AI	GATC	2 cut(s)	563, 892
Sau96I	GGNCC	2 cut(s)	36, 1159
SchI	GAGTC	1 cut(s)	612
ScrFI	CCNGG	4 cut(s)	26, 436, 778, 1208
SduI	GDGCHC	1 cut(s)	48
SfaNI	GCATC	9 cut(s)	49, 140, 167, 242, 393, 455, 781, 869, 957
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SphI	GCATGC	1 cut(s)	69
Sse9I	AATT	4 cut(s)	154, 208, 668, 682
SsiI	CCGC	5 cut(s)	62, 102, 741, 794, 1162
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	4 cut(s)	24, 434, 776, 1206
StyI	CCWWGG	3 cut(s)	39, 480, 1004
TaaI	ACNGT	4 cut(s)	275, 306, 696, 1049
TaiI	ACGT	2 cut(s)	529, 774
TasI	AATT	4 cut(s)	154, 208, 668, 682
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	2 cut(s)	65, 1164
TfiI	GAWTC	4 cut(s)	350, 466, 673, 869
Tru1I	TTAA	1 cut(s)	1170
Tru9I	TTAA	1 cut(s)	1170
TscAI	CASTG	2 cut(s)	53, 958
TseFI	GTSAC	3 cut(s)	14, 122, 224
TseI	GCWGC	3 cut(s)	285, 800, 857
Tsp45I	GTSAC	3 cut(s)	14, 122, 224
TspDTI	ATGAA	5 cut(s)	474, 567, 675, 804, 1156
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	53, 958
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	36
XceI	RCATGY	2 cut(s)	13, 69
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.