Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Reverse (-)

57526590 .. 57528433

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0448200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAACTTCTTCAAGATTTCAAGTATATGTCCTGGCTTTTTGTGCAACCCTTCTTATTCAAAGTGGCTGTTATGGCCATTATTCTGTGCATCAGACAAAACATGCAGCCTTGTTCATCTTCGGGGATTCACTATTTGATGTTGGAAATAATAACTACATAAACACTTCCACCAACTTCCAAGCAAATTTCTTCCCATATGGGGAAACCTTCTTCGGCCACCCGACTGGTAGGGTCTCCGATGGTCGTCTAATGCCCGATATCATTGCTGAATATGCAAACTTGCCTATGATTCCACCATACTTACAACCGGGGTTCGACAACTATTCTAATGGGGTGAACTTTGCATCTGCTGGGGCTGGTGCTCTAGCTGAAACGTTTCAAGGATTTGTGTTGGACCTTAAAACTCAACTGGGTTATTTCAAGAATGTGGAGAAGCAGTTGACGCACAAACTAGGTGAAACAGAAGCTCACAGATTTTTGTCCGAAGCTGTTTACTTGATTAGCATTGGAAGCAATGATTACATTGCCCCATTCATAACGAATTCAAGTTTGTTCGAGTCTCACTCACATGAAGAATATGTTGGCATGGTGACAGGAAACCTGACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTGCAGGCATGGAGCCTTTGGGTTGTACACCGGGCATGAGAACAGATAAACCAGGAAACACAAGCACCTGTAAAGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCCTGAAGCTGAAAGGACAGCTCCAAGATTTCATATACTCGAATCCAAATTTCTACTCTTACCTAAATGACATAGTTCATAATCCATCAAAACATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTATGAGCTGCGGAGGGAAGCGAGGAGTGACCGAGTATCAGTTATGTGACAATGTTACTGACTATGTCTTTTTTGATTCCGGCCATGCAACGGAAAGGATATACCAGAAAGTTTCCAAGTTATGGTGGAGCCATACTCCTGATGTCACAGCACGTTACATCAATTTGAAAGAGCTATTTGAAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

371

Amino Acids

41.36

Weight (kDa)

7.19

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 350	5.8e-27	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1050
AciI	CCGC	1 cut(s)	939
AclI	AACGTT	1 cut(s)	377
AcoI	YGGCCR	3 cut(s)	76, 217, 1009
AcsI	RAATTY	4 cut(s)	187, 544, 647, 829
AcuI	CTGAAG	1 cut(s)	806
AfaI	GTAC	2 cut(s)	682, 768
AfiI	CCNNNNNNNGG	4 cut(s)	202, 923, 1018, 1050
AjnI	CCWGG	2 cut(s)	33, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	567, 599
AluBI	AGCT	7 cut(s)	371, 470, 491, 790, 802, 936, 1102
AluI	AGCT	7 cut(s)	371, 470, 491, 790, 802, 936, 1102
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	241, 567
AoxI	GGCC	3 cut(s)	76, 217, 1009
ApeKI	GCWGC	2 cut(s)	107, 936
ApoI	RAATTY	4 cut(s)	187, 544, 647, 829
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	397, 914
AsuC2I	CCSGG	2 cut(s)	312, 687
AsuHPI	GGTGA	3 cut(s)	349, 470, 604
AvaII	GGWCC	2 cut(s)	397, 914
BalI	TGGCCA	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	119, 923
BccI	CCATC	3 cut(s)	236, 874, 889
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	2 cut(s)	35, 708
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	2 cut(s)	312, 687
BcoDI	GTCTC	2 cut(s)	241, 567
BfaI	CTAG	2 cut(s)	368, 455
BisI	GCNGC	2 cut(s)	108, 937
BlsI	GCNGC	2 cut(s)	109, 938
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	4 cut(s)	35, 312, 687, 708
Bme18I	GGWCC	2 cut(s)	397, 914
BmgT120I	GGNCC	2 cut(s)	397, 914
BmiI	GGNNCC	2 cut(s)	669, 1058
BmrFI	CCNGG	4 cut(s)	35, 312, 687, 708
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	100, 356
BmuI	ACTGGG	1 cut(s)	422
BplI	GAGNNNNNCTC	4 cut(s)	551, 583, 1048, 1080
BpuMI	CCSGG	2 cut(s)	312, 687
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	425, 455
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 923, 1018, 1050
Bse1I	ACTGG	2 cut(s)	232, 417
Bse3DI	GCAATG	3 cut(s)	264, 523, 525
BseBI	CCWGG	2 cut(s)	35, 708
BseDI	CCNNGG	1 cut(s)	311
BseLI	CCNNNNNNNGG	4 cut(s)	202, 923, 1018, 1050
BseMI	GCAATG	3 cut(s)	264, 523, 525
BseNI	ACTGG	2 cut(s)	232, 417
BseRI	GAGGAG	1 cut(s)	966
BseXI	GCAGC	2 cut(s)	119, 923
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	3 cut(s)	78, 219, 1011
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	3 cut(s)	311, 686, 1008
BslI	CCNNNNNNNGG	4 cut(s)	202, 923, 1018, 1050
BsmAI	GTCTC	2 cut(s)	241, 567
BsnI	GGCC	3 cut(s)	78, 219, 1011
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	1 cut(s)	680
Bsp143I	GATC	1 cut(s)	615
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	3 cut(s)	78, 219, 1011
BspLI	GGNNCC	2 cut(s)	669, 1058
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	3 cut(s)	264, 523, 525
BsrGI	TGTACA	1 cut(s)	680
BsrI	ACTGG	2 cut(s)	232, 417
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	1 cut(s)	615
Bst2UI	CCWGG	2 cut(s)	35, 708
BstAUI	TGTACA	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	661, 901
BstKTI	GATC	1 cut(s)	618
BstMAI	GTCTC	2 cut(s)	241, 567
BstMBI	GATC	1 cut(s)	615
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 75, 275, 445, 513
BstNI	CCWGG	2 cut(s)	35, 708
BstNSI	RCATGY	2 cut(s)	107, 903
BstSCI	CCNGG	4 cut(s)	33, 310, 685, 706
BstV1I	GCAGC	2 cut(s)	119, 923
BstXI	CCANNNNNNTGG	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	78, 219, 1011
Cac8I	GCNNGC	2 cut(s)	661, 901
Cfr13I	GGNCC	2 cut(s)	397, 914
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	681, 767
CviAII	CATG	8 cut(s)	104, 572, 589, 664, 691, 875, 900, 1013
CviQI	GTAC	2 cut(s)	681, 767
DpnI	GATC	1 cut(s)	617
DpnII	GATC	1 cut(s)	615
EaeI	YGGCCR	3 cut(s)	76, 217, 1009
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	397, 914
Eco57I	CTGAAG	1 cut(s)	806
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	2 cut(s)	33, 706
EcoRV	GATATC	1 cut(s)	262
FaeI	CATG	8 cut(s)	107, 575, 592, 667, 694, 878, 903, 1016
FatI	CATG	8 cut(s)	103, 571, 588, 663, 690, 874, 899, 1012
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	2 cut(s)	108, 937
Fsp4HI	GCNGC	2 cut(s)	108, 937
FspBI	CTAG	2 cut(s)	368, 455
GluI	GCNGC	2 cut(s)	108, 937
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	78, 219, 1011
HapII	CCGG	3 cut(s)	311, 686, 1008
HgaI	GACGC	1 cut(s)	454
Hin1II	CATG	8 cut(s)	107, 575, 592, 667, 694, 878, 903, 1016
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	5 cut(s)	128, 292, 560, 823, 1004
HpaII	CCGG	3 cut(s)	311, 686, 1008
HphI	GGTGA	3 cut(s)	349, 470, 604
Hpy166II	GTNNAC	4 cut(s)	340, 444, 496, 683
Hpy188I	TCNGA	3 cut(s)	96, 241, 487
Hpy188III	TCNNGA	4 cut(s)	15, 424, 784, 1067
Hpy8I	GTNNAC	4 cut(s)	340, 444, 496, 683
HpyAV	CCTTC	3 cut(s)	62, 220, 881
HpyCH4IV	ACGT	2 cut(s)	377, 1081
HpyCH4V	TGCA	8 cut(s)	47, 91, 107, 278, 347, 659, 743, 1016
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 75, 275, 445, 513
HpySE526I	ACGT	2 cut(s)	377, 1081
Hsp92II	CATG	8 cut(s)	107, 575, 592, 667, 694, 878, 903, 1016
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	1 cut(s)	615
LmnI	GCTCC	3 cut(s)	667, 807, 1056
Lsp1109I	GCAGC	2 cut(s)	119, 923
LweI	GCATC	2 cut(s)	100, 356
MaeI	CTAG	2 cut(s)	368, 455
MaeII	ACGT	2 cut(s)	377, 1081
MaeIII	GTNAC	6 cut(s)	592, 955, 974, 982, 1072, 1082
MalI	GATC	1 cut(s)	617
MboI	GATC	1 cut(s)	615
MboII	GAAGA	7 cut(s)	3, 112, 184, 205, 587, 654, 743
MhlI	GDGCHC	1 cut(s)	367
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	7 cut(s)	187, 544, 647, 744, 829, 927, 1090
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	2 cut(s)	124, 375
MnlI	CCTC	5 cut(s)	632, 791, 917, 935, 944
Mox20I	TGGCCA	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	1 cut(s)	78
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	1 cut(s)	570
Msp20I	TGGCCA	1 cut(s)	78
MspI	CCGG	3 cut(s)	311, 686, 1008
MspR9I	CCNGG	4 cut(s)	35, 312, 687, 708
MvaI	CCWGG	2 cut(s)	35, 708
MwoI	GCNNNNNNNGC	5 cut(s)	44, 75, 275, 445, 513
NciI	CCSGG	2 cut(s)	312, 687
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	1 cut(s)	615
NlaIII	CATG	8 cut(s)	107, 575, 592, 667, 694, 878, 903, 1016
NlaIV	GGNNCC	2 cut(s)	669, 1058
NmuCI	GTSAC	4 cut(s)	592, 955, 974, 1072
NspI	RCATGY	2 cut(s)	107, 903
PaeI	GCATGC	1 cut(s)	903
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	4 cut(s)	128, 292, 823, 1004
PflFI	GACNNNGTC	1 cut(s)	992
PflMI	CCANNNNNTGG	1 cut(s)	1050
PkrI	GCNGC	2 cut(s)	109, 938
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp1406I	AACGTT	1 cut(s)	377
Psp6I	CCWGG	2 cut(s)	33, 706
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	2 cut(s)	33, 706
PspN4I	GGNNCC	2 cut(s)	669, 1058
PspPI	GGNCC	2 cut(s)	397, 914
PsyI	GACNNNGTC	1 cut(s)	992
RsaI	GTAC	2 cut(s)	682, 768
RsaNI	GTAC	2 cut(s)	681, 767
RseI	CAYNNNNRTG	1 cut(s)	570
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	2 cut(s)	108, 937
Sau3AI	GATC	1 cut(s)	615
Sau96I	GGNCC	2 cut(s)	397, 914
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	4 cut(s)	35, 312, 687, 708
SduI	GDGCHC	1 cut(s)	367
SfaNI	GCATC	2 cut(s)	100, 356
SinI	GGWCC	2 cut(s)	397, 914
SmiMI	CAYNNNNRTG	1 cut(s)	570
SphI	GCATGC	1 cut(s)	903
Sse9I	AATT	7 cut(s)	187, 544, 647, 744, 829, 927, 1090
SsiI	CCGC	1 cut(s)	939
SspMI	CTAG	2 cut(s)	368, 455
StyD4I	CCNGG	4 cut(s)	33, 310, 685, 706
TaiI	ACGT	2 cut(s)	380, 1084
TaqI	TCGA	3 cut(s)	318, 558, 821
TaqII	GACCGA	1 cut(s)	974
TasI	AATT	7 cut(s)	187, 544, 647, 744, 829, 927, 1090
TatI	WGTACW	2 cut(s)	680, 766
TfiI	GAWTC	4 cut(s)	128, 292, 823, 1004
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseFI	GTSAC	4 cut(s)	592, 955, 974, 1072
TseI	GCWGC	2 cut(s)	107, 936
Tsp45I	GTSAC	4 cut(s)	592, 955, 974, 1072
TspDTI	ATGAA	5 cut(s)	106, 526, 588, 802, 848
TspGWI	ACGGA	1 cut(s)	1034
Tth111I	GACNNNGTC	1 cut(s)	992
Van91I	CCANNNNNTGG	1 cut(s)	1050
VpaK11BI	GGWCC	2 cut(s)	397, 914
XapI	RAATTY	4 cut(s)	187, 544, 647, 829
XceI	RCATGY	2 cut(s)	107, 903
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	2 cut(s)	368, 455
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.