FvH4_6g40380

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
31931413 .. 31935765
4353 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40380.t3

Sequence Viewer

Length: 1254 bp
ATGGGTTACATATGCGACTTCTGTGGGGATCAAAGGTCCATGGTGTATTGCCGGTCTGATGCTGCTTGCTTATGTTTATCATGTGACCGAAATGTGCATTCTGCTAATGCCTTGTCGAGGCGTCACTCGAGAACGCTGCTCTGCGAAAGATGCAATTCACAACCAGCATTAGTAAGATGTACAGAAGAGAGAGTGTCTCTTTGTCAGAATTGTGATTGGATGGGTCATGGTGCATCCACTTCAGCTGCTTCACACAAGAGGCAAACACTTAATTGTTACTCTGGCTGCCCATCAGCTTCTGAACTGTCGTCTATCTGGTCATTCGTGCTAGAGTTACCTTCTGCATCAGTGGGCGAATCTGCTTGCGAGCAGGAAATGGGGTTGATGAGCATCGCCGAGAACAGCACTGGTAGTGCTTGTAGCCCCCAGGAAAATAACAACAGAGAGAATACATCTGATACATTTGAAGTTAATGACGTTTGTGCCATGGATAAATCTGATGGTTTAGTTGGTTCCTCTTCGGCACCTGCACTTAACTTAGCTCCTCAGGTTGTTGATCAGATGCCTGGATCTGCAAACTCAACATTGCCGAAGTTATACTGTCACGGAACCAAAGGCCCTGGGCTCTGTGAAGATGATGACCTTTATGGCGATTTTGATATGGATGAAATGGATCTAAATCTTGAAAATTATAACGAACTATTTGGTGTATCTCTGAATCACTCTGAAGAGCTTTTCAAAAATGGTGGGATTGACAGTTTGTTTGGAGCAAAGAACATGTCCAGGGCTCAGGAATTAATTGCTGCTGAGGGATCATCAATTGGTCGAGTAAATGCATTGCAGCAGCCAGCATGCAGTACCGCGGCATCTGCGGATTCTGTAATGAGTACGAAAACGGAACCAATTGTTTCTTTTGTGCCAAAGCAAGCACAGTCAAACCTTTCATTTTCGGGTGTCACTGGAGAGAGTAGTGCTGGAGATTGTCAAGATTGTGGGGCTTCCTCGATGCTACTCATGGGAGAACCTCCATGGTGTCCTCCAGGCCCTGAGAATTCCTTCCAATCTGCTAACCGAAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGAGAAAAGAGTAAGGTATGCCTCTCGCAAAGCAAGAGCAGATGTAAGAAAGCGTGTAAAAGGGCGGTTTATTAAAGCTGGTGAAGCTTATGATTACGACCCTTTGAACCAGACCAGAACCAGAAGCTACTGA

Protein Analysis

418

Amino Acids

45.25

Weight (kDa)

5.45

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANCHR-like_BBOX PF22586 47 - 86 3e-06 ANCHR-like B-box zinc-binding domain
CCT PF06203 358 - 400 5.9e-16 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 693
AarI CACCTGC 1 cut(s) 535
Acc36I ACCTGC 1 cut(s) 535
AccB1I GGYRCC 1 cut(s) 523
AccII CGCG 1 cut(s) 863
AciI CCGC 4 cut(s) 861, 863, 872, 1186
AclWI GGATC 4 cut(s) 36, 577, 681, 820
AcsI RAATTY 1 cut(s) 1051
AcuI CTGAAG 2 cut(s) 225, 747
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 3 cut(s) 181, 859, 889
AfiI CCNNNNNNNGG 1 cut(s) 117
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 4 cut(s) 467, 686, 739, 1228
AjnI CCWGG 5 cut(s) 426, 565, 619, 782, 1039
AluBI AGCT 7 cut(s) 245, 296, 542, 733, 1199, 1208, 1248
AluI AGCT 7 cut(s) 245, 296, 542, 733, 1199, 1208, 1248
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 4 cut(s) 36, 577, 681, 820
AlwNI CAGNNNCTG 2 cut(s) 299, 1046
Ama87I CYCGRG 1 cut(s) 127
AoxI GGCC 2 cut(s) 616, 1042
ApeKI GCWGC 7 cut(s) 62, 136, 245, 285, 803, 841, 844
ApoI RAATTY 1 cut(s) 1051
ArsI GACNNNNNNTTYG 4 cut(s) 746, 764, 778, 796
AseI ATTAAT 1 cut(s) 797
Asp700I GAANNNNTTC 1 cut(s) 1055
AspS9I GGNCC 3 cut(s) 36, 617, 1043
AsuHPI GGTGA 1 cut(s) 1214
AvaI CYCGRG 1 cut(s) 127
AvaII GGWCC 1 cut(s) 36
AxyI CCTNAGG 1 cut(s) 546
BanI GGYRCC 1 cut(s) 523
BanII GRGCYC 2 cut(s) 627, 790
BbvCI CCTCAGC 1 cut(s) 807
BbvI GCAGC 7 cut(s) 49, 123, 232, 272, 790, 853, 856
BccI CCATC 3 cut(s) 214, 298, 494
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 5 cut(s) 428, 567, 621, 784, 1041
BclI TGATCA 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 329
BfuAI ACCTGC 1 cut(s) 535
BisI GCNGC 8 cut(s) 63, 137, 246, 286, 804, 842, 845, 864
BlsI GCNGC 8 cut(s) 64, 138, 247, 287, 805, 843, 846, 865
Bme1390I CCNGG 5 cut(s) 428, 567, 621, 784, 1041
Bme18I GGWCC 1 cut(s) 36
BmeT110I CYCGRG 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 36, 617, 1043
BmiI GGNNCC 4 cut(s) 514, 525, 610, 900
BmrFI CCNGG 5 cut(s) 428, 567, 621, 784, 1041
BmsI GCATC 8 cut(s) 49, 140, 242, 353, 399, 552, 875, 996
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 3 cut(s) 981, 996, 1023
Bpu10I CCTNAGC 2 cut(s) 789, 807
BsaBI GATNNNNATC 2 cut(s) 389, 678
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 8 cut(s) 39, 426, 486, 619, 620, 783, 861, 1028
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 2 cut(s) 412, 964
Bse21I CCTNAGG 1 cut(s) 546
Bse3DI GCAATG 2 cut(s) 584, 836
Bse8I GATNNNNATC 2 cut(s) 389, 678
BseBI CCWGG 5 cut(s) 428, 567, 621, 784, 1041
BseDI CCNNGG 8 cut(s) 39, 426, 486, 619, 620, 783, 861, 1028
BseGI GGATG 3 cut(s) 225, 233, 670
BseJI GATNNNNATC 2 cut(s) 389, 678
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMI GCAATG 2 cut(s) 584, 836
BseMII CTCAG 4 cut(s) 560, 798, 803, 1038
BseNI ACTGG 2 cut(s) 412, 964
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 7 cut(s) 49, 123, 232, 272, 790, 853, 856
BsgI GTGCAG 1 cut(s) 513
Bsh1236I CGCG 1 cut(s) 863
BshFI GGCC 2 cut(s) 618, 1044
BshNI GGYRCC 1 cut(s) 523
BsiHKCI CYCGRG 1 cut(s) 127
BsiSI CCGG 1 cut(s) 52
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 201
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 2 cut(s) 618, 1044
BsoBI CYCGRG 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 627, 790
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 5 cut(s) 28, 556, 569, 673, 812
Bsp19I CCATGG 3 cut(s) 39, 486, 1028
BspACI CCGC 4 cut(s) 861, 863, 872, 1186
BspANI GGCC 2 cut(s) 618, 1044
BspCNI CTCAG 4 cut(s) 559, 799, 802, 1039
BspFNI CGCG 1 cut(s) 863
BspLI GGNNCC 4 cut(s) 514, 525, 610, 900
BspMI ACCTGC 1 cut(s) 535
BspPI GGATC 4 cut(s) 36, 577, 681, 820
BspQI GCTCTTC 1 cut(s) 723
BspT107I GGYRCC 1 cut(s) 523
BsrDI GCAATG 2 cut(s) 584, 836
BsrFI RCCGGY 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 179
BsrI ACTGG 2 cut(s) 412, 964
BssAI RCCGGY 1 cut(s) 51
BssECI CCNNGG 8 cut(s) 39, 426, 486, 619, 620, 783, 861, 1028
BssMI GATC 5 cut(s) 28, 556, 569, 673, 812
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 3 cut(s) 39, 486, 1028
Bst2UI CCWGG 5 cut(s) 428, 567, 621, 784, 1041
Bst4CI ACNGT 4 cut(s) 306, 602, 758, 933
Bst6I CTCTTC 3 cut(s) 180, 523, 723
BstACI GRCGYC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 179
BstC8I GCNNGC 7 cut(s) 67, 364, 368, 849, 853, 927, 1114
BstDEI CTNAG 5 cut(s) 538, 546, 789, 807, 1047
BstDSI CCRYGG 4 cut(s) 39, 486, 861, 1028
BstENI CCTNNNNNAGG 1 cut(s) 115
BstF5I GGATG 3 cut(s) 225, 233, 670
BstFNI CGCG 1 cut(s) 863
BstKTI GATC 5 cut(s) 31, 559, 572, 676, 815
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 5 cut(s) 28, 556, 569, 673, 812
BstMWI GCNNNNNNNGC 3 cut(s) 150, 869, 1205
BstNI CCWGG 5 cut(s) 428, 567, 621, 784, 1041
BstNSI RCATGY 2 cut(s) 781, 855
BstSCI CCNGG 5 cut(s) 426, 565, 619, 782, 1039
BstUI CGCG 1 cut(s) 863
BstV1I GCAGC 7 cut(s) 49, 123, 232, 272, 790, 853, 856
BstX2I RGATCY 2 cut(s) 569, 673
BstYI RGATCY 2 cut(s) 569, 673
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 2 cut(s) 618, 1044
BtgI CCRYGG 4 cut(s) 39, 486, 861, 1028
BtgZI GCGATG 1 cut(s) 376
BtsCI GGATG 3 cut(s) 225, 233, 670
BtsIMutI CAGTG 3 cut(s) 354, 405, 957
BveI ACCTGC 1 cut(s) 535
Cac8I GCNNGC 7 cut(s) 67, 364, 368, 849, 853, 927, 1114
CaiI CAGNNNCTG 2 cut(s) 299, 1046
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 3 cut(s) 36, 617, 1043
Cfr42I CCGCGG 1 cut(s) 864
CseI GACGC 1 cut(s) 110
Csp6I GTAC 3 cut(s) 180, 858, 888
CspCI CAANNNNNGTGG 2 cut(s) 727, 762
CviAII CATG 8 cut(s) 40, 81, 227, 487, 778, 852, 1015, 1029
CviQI GTAC 3 cut(s) 180, 858, 888
DdeI CTNAG 5 cut(s) 538, 546, 789, 807, 1047
DpnI GATC 5 cut(s) 30, 558, 571, 675, 814
DpnII GATC 5 cut(s) 28, 556, 569, 673, 812
Eam1104I CTCTTC 3 cut(s) 180, 523, 723
EarI CTCTTC 3 cut(s) 180, 523, 723
Eco130I CCWWGG 3 cut(s) 39, 486, 1028
Eco24I GRGCYC 2 cut(s) 627, 790
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 225, 747
Eco81I CCTNAGG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 115
EcoO109I RGGNCCY 2 cut(s) 617, 1043
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 5 cut(s) 426, 565, 619, 782, 1039
EcoT14I CCWWGG 3 cut(s) 39, 486, 1028
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 2 cut(s) 627, 790
ErhI CCWWGG 3 cut(s) 39, 486, 1028
FaeI CATG 8 cut(s) 43, 84, 230, 490, 781, 855, 1018, 1032
FatI CATG 8 cut(s) 39, 80, 226, 486, 777, 851, 1014, 1028
FauNDI CATATG 1 cut(s) 11
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 8 cut(s) 63, 137, 246, 286, 804, 842, 845, 864
FokI GGATG 3 cut(s) 220, 232, 677
FriOI GRGCYC 2 cut(s) 627, 790
Fsp4HI GCNGC 8 cut(s) 63, 137, 246, 286, 804, 842, 845, 864
FspBI CTAG 1 cut(s) 329
GluI GCNGC 8 cut(s) 63, 137, 246, 286, 804, 842, 845, 864
GsuI CTGGAG 3 cut(s) 981, 996, 1023
HaeIII GGCC 2 cut(s) 618, 1044
HapII CCGG 1 cut(s) 52
HgaI GACGC 1 cut(s) 110
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 8 cut(s) 43, 84, 230, 490, 781, 855, 1018, 1032
HindIII AAGCTT 1 cut(s) 1206
HinfI GANTC 3 cut(s) 356, 718, 875
HpaII CCGG 1 cut(s) 52
HphI GGTGA 1 cut(s) 1214
Hpy188I TCNGA 8 cut(s) 58, 207, 301, 457, 499, 561, 717, 727
Hpy188III TCNNGA 4 cut(s) 129, 683, 791, 986
HpyAV CCTTC 3 cut(s) 348, 1066, 1102
HpyCH4III ACNGT 4 cut(s) 306, 602, 758, 933
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 9 cut(s) 97, 153, 233, 344, 530, 575, 836, 841, 855
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 869, 1205
HpyF3I CTNAG 5 cut(s) 538, 546, 789, 807, 1047
HpySE526I ACGT 1 cut(s) 477
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 8 cut(s) 43, 84, 230, 490, 781, 855, 1018, 1032
Ksp22I TGATCA 1 cut(s) 556
KspI CCGCGG 1 cut(s) 864
Kzo9I GATC 5 cut(s) 28, 556, 569, 673, 812
LguI GCTCTTC 1 cut(s) 723
LmnI GCTCC 2 cut(s) 547, 767
Lsp1109I GCAGC 7 cut(s) 49, 123, 232, 272, 790, 853, 856
LweI GCATC 8 cut(s) 49, 140, 242, 353, 399, 552, 875, 996
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 8 cut(s) 5, 83, 122, 275, 333, 602, 955, 1091
MalI GATC 5 cut(s) 30, 558, 571, 675, 814
MboI GATC 5 cut(s) 28, 556, 569, 673, 812
MboII GAAGA 5 cut(s) 197, 510, 644, 740, 1117
MfeI CAATTG 2 cut(s) 819, 903
MflI RGATCY 2 cut(s) 569, 673
MhlI GDGCHC 2 cut(s) 627, 790
MluCI AATT 9 cut(s) 154, 208, 271, 688, 794, 798, 819, 903, 1051
MnlI CCTC 9 cut(s) 111, 252, 526, 555, 802, 1012, 1035, 1047, 1153
Mph1103I ATGCAT 1 cut(s) 838
MroXI GAANNNNTTC 1 cut(s) 1055
MseI TTAA 5 cut(s) 270, 471, 534, 797, 1194
MspA1I CMGCKG 2 cut(s) 245, 863
MspI CCGG 1 cut(s) 52
MspR9I CCNGG 5 cut(s) 428, 567, 621, 784, 1041
MunI CAATTG 2 cut(s) 819, 903
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 5 cut(s) 428, 567, 621, 784, 1041
MvnI CGCG 1 cut(s) 863
MwoI GCNNNNNNNGC 3 cut(s) 150, 869, 1205
NcoI CCATGG 3 cut(s) 39, 486, 1028
NdeI CATATG 1 cut(s) 11
NdeII GATC 5 cut(s) 28, 556, 569, 673, 812
NlaIII CATG 8 cut(s) 43, 84, 230, 490, 781, 855, 1018, 1032
NlaIV GGNNCC 4 cut(s) 514, 525, 610, 900
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 4 cut(s) 83, 122, 602, 955
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 2 cut(s) 781, 855
PaeI GCATGC 1 cut(s) 855
PaeR7I CTCGAG 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 535
PasI CCCWGGG 1 cut(s) 620
PciI ACATGT 1 cut(s) 777
PciSI GCTCTTC 1 cut(s) 723
PctI GAATGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 1055
PfeI GAWTC 3 cut(s) 356, 718, 875
PkrI GCNGC 8 cut(s) 64, 138, 247, 287, 805, 843, 846, 865
PscI ACATGT 1 cut(s) 777
PshBI ATTAAT 1 cut(s) 797
PsiI TTATAA 1 cut(s) 693
Psp6I CCWGG 5 cut(s) 426, 565, 619, 782, 1039
PspGI CCWGG 5 cut(s) 426, 565, 619, 782, 1039
PspN4I GGNNCC 4 cut(s) 514, 525, 610, 900
PspPI GGNCC 3 cut(s) 36, 617, 1043
PstNI CAGNNNCTG 2 cut(s) 299, 1046
PsuI RGATCY 2 cut(s) 569, 673
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 3 cut(s) 181, 859, 889
RsaNI GTAC 3 cut(s) 180, 858, 888
SacII CCGCGG 1 cut(s) 864
SapI GCTCTTC 1 cut(s) 723
SaqAI TTAA 5 cut(s) 270, 471, 534, 797, 1194
SatI GCNGC 8 cut(s) 63, 137, 246, 286, 804, 842, 845, 864
Sau3AI GATC 5 cut(s) 28, 556, 569, 673, 812
Sau96I GGNCC 3 cut(s) 36, 617, 1043
ScrFI CCNGG 5 cut(s) 428, 567, 621, 784, 1041
SduI GDGCHC 2 cut(s) 627, 790
SfaNI GCATC 8 cut(s) 49, 140, 242, 353, 399, 552, 875, 996
Sfr274I CTCGAG 1 cut(s) 127
Sfr303I CCGCGG 1 cut(s) 864
SgrBI CCGCGG 1 cut(s) 864
SinI GGWCC 1 cut(s) 36
SlaI CTCGAG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SphI GCATGC 1 cut(s) 855
Sse9I AATT 9 cut(s) 154, 208, 271, 688, 794, 798, 819, 903, 1051
SsiI CCGC 4 cut(s) 861, 863, 872, 1186
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 5 cut(s) 426, 565, 619, 782, 1039
StyI CCWWGG 3 cut(s) 39, 486, 1028
TaaI ACNGT 4 cut(s) 306, 602, 758, 933
TaiI ACGT 1 cut(s) 480
TaqI TCGA 4 cut(s) 116, 128, 826, 1004
TaqII GACCGA 1 cut(s) 102
TasI AATT 9 cut(s) 154, 208, 271, 688, 794, 798, 819, 903, 1051
TatI WGTACW 1 cut(s) 179
TauI GCSGC 1 cut(s) 866
TfiI GAWTC 3 cut(s) 356, 718, 875
Tru1I TTAA 5 cut(s) 270, 471, 534, 797, 1194
Tru9I TTAA 5 cut(s) 270, 471, 534, 797, 1194
TscAI CASTG 3 cut(s) 354, 412, 964
TseFI GTSAC 4 cut(s) 83, 122, 602, 955
TseI GCWGC 7 cut(s) 62, 136, 245, 285, 803, 841, 844
Tsp45I GTSAC 4 cut(s) 83, 122, 602, 955
TspDTI ATGAA 2 cut(s) 681, 933
TspGWI ACGGA 2 cut(s) 621, 911
TspRI CASTG 3 cut(s) 354, 412, 964
VpaK11BI GGWCC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 797
XagI CCTNNNNNAGG 1 cut(s) 115
XapI RAATTY 1 cut(s) 1051
XceI RCATGY 2 cut(s) 781, 855
XhoI CTCGAG 1 cut(s) 127
XmnI GAANNNNTTC 1 cut(s) 1055
XspI CTAG 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.