Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Forward (+)

20605421 .. 20610187

Gene Structure 4767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G194500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGTTACATATGCGATTTTTGTGGGGATCAAAGGTCCATGGTGTATTGCCGGTCTGATGCGGCGTGCTTATGTTTATCATGTGACCGAAATGTCCACTCTGCAAATGCCCTGTCTAGGCGTCATTCAAGAACACTTCTTTGTGAAAGATGCAATTCACAACCCGCATTAGTAAGATGCACAGAAGAAAGAGTGTCTCTTTGTCAGAATTGTGATTGGATGGGTCATGGAACATCTACCTCAGCTTCAGCACATAAGAGGCAAACGCTCAATTGTTACTCTGGCTGCCCATCAGCTTCTGAACTGTCTTCTATCTGGTCATTCGTTTTAGATTTACCTGCTGCAGGCGAATCTGCTTGCGAGCAGGAAATGGGATTGATGAGCATCGCAGAGAACAGCACTGGAAGTGCTTGGAGCCCTCCAGAAAGTAACGCTAAACAAAATGCATCTGGTACAGTTGAAGTGAATGGTGTACGTTCCGTTGATAAGTCCGGTGTTCTTGTTGGTTCCTCTTCGGTGCCTGAACTTAACCCTGCTACTCATGTTGTTGGCCAGCAGGCCGGATCTGAAAATGCAACATTGCCTAAGTTATTCTGTCATGGGACCAAAGGTCCTGCAATCCCTGAAGATGATGACCTTTATGATGATTTCGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAAGAATTATTTGGTGTATCTCTGAATCACTCTGAAGAGCTTTTCAAGAATGGTGGGATTGATAGCTTGTTTGGGGCAAAGAACATGTCCAGGGGTAATTCCAATTATCAGGATGTGGGTGCTGCTGAGGGGTCTTCAGTTGGACTGGTAAATGCTTTACAGCCAGCATGCAGTAATGCTGCCTCTGCTGATTCTGTAATGAGTACGAAAACTGACCCAATTATTTGTTTTCCGGCAAAACAAGCACAATCAAACCTTTCATTTTCGGGTGTTACTGGAGAGAGTAGTGCTGGAGATTGTCAAGACTGTGGGGCTTCCTCAATGCTTCTCATGGGAGAGCCGCCATGGTGTCCTCCATGCCCTGAGAGTTCCATGCAATCAGCTAACCGTAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAGTTTGACAAAAGGGTGAGGTATGCTTCTCGCAAAGCAAGGGCTGATGTAAGAAAGCGTGTGAAAGGGCGCTTCATTAAAGCTGGTGAAGCTTATGATTATGACCCCTTGAACCAGGCCAGAACCAGAAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

419

Amino Acids

45.1

Weight (kDa)

5.63

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	517
AciI	CCGC	3 cut(s)	62, 165, 1028
AclWI	GGATC	2 cut(s)	36, 571
AcoI	YGGCCR	1 cut(s)	550
AcuI	CTGAAG	4 cut(s)	231, 645, 741, 807
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	3 cut(s)	454, 474, 892
AfiI	CCNNNNNNNGG	2 cut(s)	117, 344
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	129, 461, 673, 680, 733, 1231
AhdI	GACNNNNNGTC	1 cut(s)	609
AjnI	CCWGG	2 cut(s)	776, 1233
AjuI	GAANNNNNNNTTGG	2 cut(s)	681, 713
AluBI	AGCT	8 cut(s)	245, 296, 727, 753, 1070, 1202, 1211, 1251
AluI	AGCT	8 cut(s)	245, 296, 727, 753, 1070, 1202, 1211, 1251
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	36, 571
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	3 cut(s)	550, 558, 1236
ApeKI	GCWGC	4 cut(s)	285, 341, 809, 866
ArsI	GACNNNNNNTTYG	4 cut(s)	98, 130, 758, 790
AspLEI	GCGC	1 cut(s)	1191
AspS9I	GGNCC	3 cut(s)	36, 603, 611
AsuHPI	GGTGA	2 cut(s)	1147, 1217
AvaII	GGWCC	3 cut(s)	36, 603, 611
BalI	TGGCCA	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	2 cut(s)	300, 813
BbvCI	CCTCAGC	2 cut(s)	241, 813
BbvI	GCAGC	4 cut(s)	272, 328, 796, 853
BccI	CCATC	2 cut(s)	214, 298
BciT130I	CCWGG	2 cut(s)	778, 1235
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	1192
BfuAI	ACCTGC	1 cut(s)	346
BisI	GCNGC	6 cut(s)	63, 286, 342, 810, 867, 1028
BlsI	GCNGC	6 cut(s)	64, 287, 343, 811, 868, 1029
Bme1390I	CCNGG	2 cut(s)	778, 1235
Bme18I	GGWCC	3 cut(s)	36, 603, 611
BmeRI	GACNNNNNGTC	1 cut(s)	609
BmgT120I	GGNCC	3 cut(s)	36, 603, 611
BmiI	GGNNCC	4 cut(s)	416, 508, 519, 604
BmrFI	CCNGG	2 cut(s)	778, 1235
BmsI	GCATC	5 cut(s)	49, 140, 167, 393, 455
BpiI	GAAGAC	2 cut(s)	300, 813
BpmI	CTGGAG	3 cut(s)	405, 984, 999
Bpu10I	CCTNAGC	2 cut(s)	241, 813
BsaBI	GATNNNNATC	2 cut(s)	383, 672
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	39, 777, 1031
BsaWI	WCCGGW	1 cut(s)	491
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 344
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	3 cut(s)	406, 837, 967
Bse3DI	GCAATG	1 cut(s)	578
Bse8I	GATNNNNATC	2 cut(s)	383, 672
BseBI	CCWGG	2 cut(s)	778, 1235
BseDI	CCNNGG	3 cut(s)	39, 777, 1031
BseGI	GGATG	3 cut(s)	225, 664, 805
BseJI	GATNNNNATC	2 cut(s)	383, 672
BseLI	CCNNNNNNNGG	2 cut(s)	117, 344
BseMI	GCAATG	1 cut(s)	578
BseMII	CTCAG	3 cut(s)	255, 804, 1041
BseNI	ACTGG	3 cut(s)	406, 837, 967
BseXI	GCAGC	4 cut(s)	272, 328, 796, 853
BshFI	GGCC	3 cut(s)	552, 560, 1238
BshNI	GGYRCC	1 cut(s)	517
BsiSI	CCGG	4 cut(s)	52, 492, 561, 920
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	117, 344
BsmAI	GTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	552, 560, 1238
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	28, 563
Bsp19I	CCATGG	2 cut(s)	39, 1031
BspACI	CCGC	3 cut(s)	62, 165, 1028
BspANI	GGCC	3 cut(s)	552, 560, 1238
BspCNI	CTCAG	3 cut(s)	254, 805, 1042
BspLI	GGNNCC	4 cut(s)	416, 508, 519, 604
BspMAI	CTGCAG	1 cut(s)	346
BspMI	ACCTGC	1 cut(s)	346
BspPI	GGATC	2 cut(s)	36, 571
BspQI	GCTCTTC	1 cut(s)	717
BspT107I	GGYRCC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	578
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	3 cut(s)	406, 837, 967
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	3 cut(s)	39, 777, 1031
BssMI	GATC	2 cut(s)	28, 563
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	2 cut(s)	39, 1031
Bst2UI	CCWGG	2 cut(s)	778, 1235
Bst4CI	ACNGT	4 cut(s)	306, 457, 995, 1076
Bst6I	CTCTTC	2 cut(s)	517, 717
BstACI	GRCGYC	1 cut(s)	121
BstC8I	GCNNGC	9 cut(s)	67, 346, 358, 362, 554, 558, 852, 856, 1117
BstDEI	CTNAG	4 cut(s)	241, 585, 813, 1050
BstDSI	CCRYGG	2 cut(s)	39, 1031
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	225, 664, 805
BstH2I	RGCGCY	1 cut(s)	1192
BstHHI	GCGC	1 cut(s)	1191
BstKTI	GATC	2 cut(s)	31, 566
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	28, 563
BstMWI	GCNNNNNNNGC	3 cut(s)	872, 929, 1208
BstNI	CCWGG	2 cut(s)	778, 1235
BstNSI	RCATGY	2 cut(s)	775, 858
BstSCI	CCNGG	2 cut(s)	776, 1233
BstSFI	CTRYAG	1 cut(s)	342
BstV1I	GCAGC	4 cut(s)	272, 328, 796, 853
BstV2I	GAAGAC	2 cut(s)	300, 813
BstX2I	RGATCY	1 cut(s)	563
BstYI	RGATCY	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	552, 560, 1238
BtgI	CCRYGG	2 cut(s)	39, 1031
BtgZI	GCGATG	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	225, 664, 805
BtsIMutI	CAGTG	1 cut(s)	399
BveI	ACCTGC	1 cut(s)	346
Cac8I	GCNNGC	9 cut(s)	67, 346, 358, 362, 554, 558, 852, 856, 1117
CaiI	CAGNNNCTG	1 cut(s)	299
CfoI	GCGC	1 cut(s)	1191
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	36, 603, 611
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	3 cut(s)	453, 473, 891
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviQI	GTAC	3 cut(s)	453, 473, 891
DdeI	CTNAG	4 cut(s)	241, 585, 813, 1050
DpnI	GATC	2 cut(s)	30, 565
DpnII	GATC	2 cut(s)	28, 563
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	609
DseDI	GACNNNNNNGTC	1 cut(s)	92
EaeI	YGGCCR	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	517, 717
Eam1105I	GACNNNNNGTC	1 cut(s)	609
EarI	CTCTTC	2 cut(s)	517, 717
Eco130I	CCWWGG	2 cut(s)	39, 1031
Eco24I	GRGCYC	1 cut(s)	419
Eco47I	GGWCC	3 cut(s)	36, 603, 611
Eco57I	CTGAAG	4 cut(s)	231, 645, 741, 807
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	611
EcoRII	CCWGG	2 cut(s)	776, 1233
EcoT14I	CCWWGG	2 cut(s)	39, 1031
EcoT22I	ATGCAT	1 cut(s)	448
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	2 cut(s)	39, 1031
FaqI	GGGAC	1 cut(s)	616
FauI	CCCGC	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	11
Fnu4HI	GCNGC	6 cut(s)	63, 286, 342, 810, 867, 1028
FokI	GGATG	3 cut(s)	232, 671, 812
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	6 cut(s)	63, 286, 342, 810, 867, 1028
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	1190
GluI	GCNGC	6 cut(s)	63, 286, 342, 810, 867, 1028
GsuI	CTGGAG	3 cut(s)	405, 984, 999
HaeII	RGCGCY	1 cut(s)	1192
HaeIII	GGCC	3 cut(s)	552, 560, 1238
HapII	CCGG	4 cut(s)	52, 492, 561, 920
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	1191
Hin1I	GRCGYC	1 cut(s)	121
Hin6I	GCGC	1 cut(s)	1189
HinP1I	GCGC	1 cut(s)	1189
HindIII	AAGCTT	1 cut(s)	1209
HinfI	GANTC	4 cut(s)	350, 673, 712, 878
HpaII	CCGG	4 cut(s)	52, 492, 561, 920
HphI	GGTGA	2 cut(s)	1147, 1217
Hpy166II	GTNNAC	2 cut(s)	97, 473
Hpy188I	TCNGA	6 cut(s)	58, 207, 301, 568, 711, 721
Hpy188III	TCNNGA	6 cut(s)	129, 422, 677, 733, 797, 989
Hpy8I	GTNNAC	2 cut(s)	97, 473
HpyAV	CCTTC	1 cut(s)	1105
HpyCH4III	ACNGT	4 cut(s)	306, 457, 995, 1076
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	9 cut(s)	104, 153, 180, 344, 446, 575, 617, 858, 1063
HpyF10VI	GCNNNNNNNGC	3 cut(s)	872, 929, 1208
HpyF3I	CTNAG	4 cut(s)	241, 585, 813, 1050
HpySE526I	ACGT	1 cut(s)	475
Hsp92I	GRCGYC	1 cut(s)	121
HspAI	GCGC	1 cut(s)	1189
Kzo9I	GATC	2 cut(s)	28, 563
LguI	GCTCTTC	1 cut(s)	717
LmnI	GCTCC	1 cut(s)	414
Lsp1109I	GCAGC	4 cut(s)	272, 328, 796, 853
LweI	GCATC	5 cut(s)	49, 140, 167, 393, 455
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	6 cut(s)	5, 83, 275, 428, 958, 1094
MalI	GATC	2 cut(s)	30, 565
MboI	GATC	2 cut(s)	28, 563
MboII	GAAGA	8 cut(s)	197, 300, 504, 638, 701, 734, 813, 1120
MfeI	CAATTG	1 cut(s)	271
MflI	RGATCY	1 cut(s)	563
MhlI	GDGCHC	1 cut(s)	419
MlsI	TGGCCA	1 cut(s)	552
MluCI	AATT	8 cut(s)	154, 208, 271, 682, 692, 784, 790, 906
MluNI	TGGCCA	1 cut(s)	552
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	9 cut(s)	250, 252, 429, 520, 808, 880, 1015, 1050, 1131
Mox20I	TGGCCA	1 cut(s)	552
Mph1103I	ATGCAT	1 cut(s)	448
MscI	TGGCCA	1 cut(s)	552
MseI	TTAA	2 cut(s)	528, 1197
Msp20I	TGGCCA	1 cut(s)	552
MspI	CCGG	4 cut(s)	52, 492, 561, 920
MspR9I	CCNGG	2 cut(s)	778, 1235
MunI	CAATTG	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	778, 1235
MwoI	GCNNNNNNNGC	3 cut(s)	872, 929, 1208
NcoI	CCATGG	2 cut(s)	39, 1031
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	2 cut(s)	28, 563
NlaIV	GGNNCC	4 cut(s)	416, 508, 519, 604
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	2 cut(s)	775, 858
PaeI	GCATGC	1 cut(s)	858
PciI	ACATGT	1 cut(s)	771
PciSI	GCTCTTC	1 cut(s)	717
PfeI	GAWTC	4 cut(s)	350, 673, 712, 878
PkrI	GCNGC	6 cut(s)	64, 287, 343, 811, 868, 1029
PpuMI	RGGWCCY	1 cut(s)	611
PscI	ACATGT	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	611
Psp6I	CCWGG	2 cut(s)	776, 1233
PspGI	CCWGG	2 cut(s)	776, 1233
PspN4I	GGNNCC	4 cut(s)	416, 508, 519, 604
PspPI	GGNCC	3 cut(s)	36, 603, 611
PspPPI	RGGWCCY	1 cut(s)	611
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	563
RsaI	GTAC	3 cut(s)	454, 474, 892
RsaNI	GTAC	3 cut(s)	453, 473, 891
SapI	GCTCTTC	1 cut(s)	717
SaqAI	TTAA	2 cut(s)	528, 1197
SatI	GCNGC	6 cut(s)	63, 286, 342, 810, 867, 1028
Sau3AI	GATC	2 cut(s)	28, 563
Sau96I	GGNCC	3 cut(s)	36, 603, 611
ScrFI	CCNGG	2 cut(s)	778, 1235
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	5 cut(s)	49, 140, 167, 393, 455
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	3 cut(s)	36, 603, 611
SphI	GCATGC	1 cut(s)	858
Sse9I	AATT	8 cut(s)	154, 208, 271, 682, 692, 784, 790, 906
SsiI	CCGC	3 cut(s)	62, 165, 1028
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	776, 1233
StyI	CCWWGG	2 cut(s)	39, 1031
TaaI	ACNGT	4 cut(s)	306, 457, 995, 1076
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	651
TaqII	GACCGA	1 cut(s)	102
TasI	AATT	8 cut(s)	154, 208, 271, 682, 692, 784, 790, 906
TauI	GCSGC	2 cut(s)	65, 1030
TfiI	GAWTC	4 cut(s)	350, 673, 712, 878
Tru1I	TTAA	2 cut(s)	528, 1197
Tru9I	TTAA	2 cut(s)	528, 1197
TscAI	CASTG	1 cut(s)	406
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	285, 341, 809, 866
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	675, 702, 936, 1183
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	36, 603, 611
XagI	CCTNNNNNAGG	1 cut(s)	342
XceI	RCATGY	2 cut(s)	775, 858
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.