Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Reverse (-)

19561319 .. 19563832

Gene Structure 2514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCGATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATTCTGCTAATGCTCTATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGTCCGGTGTAGTGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTCAGGCCATGACGGCAAGAATTCTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGGTTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTCTTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGGCACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGCTGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCAATGGCTAAGGAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAATGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATATCTCCTTCTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGCTTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGTTTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCCAACAAGAAGCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

373

Amino Acids

41.24

Weight (kDa)

5.72

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	47 - 86	1.4e-06	ANCHR-like B-box zinc-binding domain
CCT	PF06203	316 - 358	1.6e-15	CCT motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	897
AccI	GTMKAC	1 cut(s)	576
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	130, 366
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	238, 505
AcuI	CTGAAG	1 cut(s)	378
AcyI	GRCGYC	1 cut(s)	857
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflIII	ACRYGT	1 cut(s)	944
AgsI	TTSAA	4 cut(s)	343, 550, 622, 879
AhdI	GACNNNNNGTC	1 cut(s)	1064
AjuI	GAANNNNNNNTTGG	2 cut(s)	591, 623
AleI	CACNNNNGTG	1 cut(s)	492
AluBI	AGCT	6 cut(s)	167, 526, 683, 874, 1082, 1116
AluI	AGCT	6 cut(s)	167, 526, 683, 874, 1082, 1116
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	2 cut(s)	1021, 1036
AlwI	GGATC	1 cut(s)	492
AlwNI	CAGNNNCTG	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	5 cut(s)	62, 470, 700, 703, 871
ApoI	RAATTY	2 cut(s)	238, 505
AseI	ATTAAT	1 cut(s)	441
AsuHPI	GGTGA	2 cut(s)	38, 1088
AsuII	TTCGAA	1 cut(s)	794
AvaI	CYCGRG	1 cut(s)	298
BanI	GGYRCC	1 cut(s)	897
BanII	GRGCYC	2 cut(s)	695, 1106
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	5 cut(s)	74, 457, 712, 715, 883
BccI	CCATC	3 cut(s)	281, 401, 909
BceAI	ACGGC	2 cut(s)	247, 1061
BcoDI	GTCTC	2 cut(s)	1021, 1036
BfaI	CTAG	2 cut(s)	492, 1020
BfmI	CTRYAG	2 cut(s)	396, 729
BglI	GCCNNNNNGGC	1 cut(s)	231
BisI	GCNGC	5 cut(s)	63, 471, 701, 704, 872
BlsI	GCNGC	5 cut(s)	64, 472, 702, 705, 873
BmeRI	GACNNNNNGTC	1 cut(s)	1064
BmeT110I	CYCGRG	1 cut(s)	298
BmiI	GGNNCC	2 cut(s)	885, 899
BmsI	GCATC	3 cut(s)	49, 734, 822
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	840, 855
Bpu10I	CCTNAGC	1 cut(s)	519
Bpu14I	TTCGAA	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	863
BsaAI	YACGTR	1 cut(s)	947
BsaHI	GRCGYC	1 cut(s)	857
BsaJI	CCNNGG	1 cut(s)	893
BsaWI	WCCGGW	2 cut(s)	174, 1073
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	462, 823
BseCI	ATCGAT	1 cut(s)	863
BseDI	CCNNGG	1 cut(s)	893
BseGI	GGATG	2 cut(s)	547, 901
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseNI	ACTGG	2 cut(s)	462, 823
BseXI	GCAGC	5 cut(s)	74, 457, 712, 715, 883
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	1 cut(s)	225
BshNI	GGYRCC	1 cut(s)	897
BshVI	ATCGAT	1 cut(s)	863
BsiHKAI	GWGCWC	1 cut(s)	648
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	175, 1074
BslFI	GGGAC	1 cut(s)	279
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	1021, 1036
BsmBI	CGTCTC	1 cut(s)	1036
BsmFI	GGGAC	1 cut(s)	279
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	298
Bsp119I	TTCGAA	1 cut(s)	794
Bsp1286I	GDGCHC	3 cut(s)	648, 695, 1106
Bsp143I	GATC	3 cut(s)	35, 53, 484
Bsp19I	CCATGG	1 cut(s)	893
BspACI	CCGC	2 cut(s)	130, 366
BspANI	GGCC	1 cut(s)	225
BspDI	ATCGAT	1 cut(s)	863
BspFNI	CGCG	1 cut(s)	130
BspHI	TCATGA	2 cut(s)	685, 741
BspLI	GGNNCC	2 cut(s)	885, 899
BspMAI	CTGCAG	1 cut(s)	733
BspPI	GGATC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	794
BspT107I	GGYRCC	1 cut(s)	897
BsrI	ACTGG	2 cut(s)	462, 823
BssECI	CCNNGG	1 cut(s)	893
BssMI	GATC	3 cut(s)	35, 53, 484
BssNI	GRCGYC	1 cut(s)	857
BssT1I	CCWWGG	1 cut(s)	893
Bst4CI	ACNGT	4 cut(s)	89, 212, 650, 1062
Bst6I	CTCTTC	2 cut(s)	355, 644
BstACI	GRCGYC	1 cut(s)	857
BstBAI	YACGTR	1 cut(s)	947
BstBI	TTCGAA	1 cut(s)	794
BstC8I	GCNNGC	4 cut(s)	165, 708, 786, 988
BstDEI	CTNAG	1 cut(s)	519
BstDSI	CCRYGG	1 cut(s)	893
BstF5I	GGATG	2 cut(s)	547, 901
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	3 cut(s)	38, 56, 487
BstMAI	GTCTC	2 cut(s)	1021, 1036
BstMBI	GATC	3 cut(s)	35, 53, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 231
BstNSI	RCATGY	1 cut(s)	938
BstSFI	CTRYAG	2 cut(s)	396, 729
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	5 cut(s)	74, 457, 712, 715, 883
BstXI	CCANNNNNNTGG	2 cut(s)	851, 894
Bsu15I	ATCGAT	1 cut(s)	863
BsuRI	GGCC	1 cut(s)	225
BsuTUI	ATCGAT	1 cut(s)	863
BtgI	CCRYGG	1 cut(s)	893
BtsCI	GGATG	2 cut(s)	547, 901
BtsIMutI	CAGTG	1 cut(s)	816
Cac8I	GCNNGC	4 cut(s)	165, 708, 786, 988
CaiI	CAGNNNCTG	1 cut(s)	170
CciI	TCATGA	2 cut(s)	685, 741
ClaI	ATCGAT	1 cut(s)	863
CseI	GACGC	1 cut(s)	846
CviAII	CATG	5 cut(s)	227, 686, 742, 894, 935
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	3 cut(s)	37, 55, 486
DpnII	GATC	3 cut(s)	35, 53, 484
DriI	GACNNNNNGTC	1 cut(s)	1064
Eam1104I	CTCTTC	2 cut(s)	355, 644
Eam1105I	GACNNNNNGTC	1 cut(s)	1064
EarI	CTCTTC	2 cut(s)	355, 644
Eco130I	CCWWGG	1 cut(s)	893
Eco24I	GRGCYC	2 cut(s)	695, 1106
Eco32I	GATATC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	238
EcoRV	GATATC	1 cut(s)	635
EcoT14I	CCWWGG	1 cut(s)	893
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	2 cut(s)	695, 1106
ErhI	CCWWGG	1 cut(s)	893
Esp3I	CGTCTC	1 cut(s)	1036
FaeI	CATG	5 cut(s)	230, 689, 745, 897, 938
FaqI	GGGAC	1 cut(s)	279
FatI	CATG	5 cut(s)	226, 685, 741, 893, 934
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	5 cut(s)	63, 471, 701, 704, 872
FokI	GGATG	2 cut(s)	554, 888
FriOI	GRGCYC	2 cut(s)	695, 1106
Fsp4HI	GCNGC	5 cut(s)	63, 471, 701, 704, 872
FspBI	CTAG	2 cut(s)	492, 1020
GluI	GCNGC	5 cut(s)	63, 471, 701, 704, 872
GsuI	CTGGAG	2 cut(s)	840, 855
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	2 cut(s)	175, 1074
HgaI	GACGC	1 cut(s)	846
Hin1I	GRCGYC	1 cut(s)	857
Hin1II	CATG	5 cut(s)	230, 689, 745, 897, 938
HindIII	AAGCTT	1 cut(s)	1080
HinfI	GANTC	2 cut(s)	362, 734
HpaII	CCGG	2 cut(s)	175, 1074
HphI	GGTGA	2 cut(s)	38, 1088
Hpy166II	GTNNAC	2 cut(s)	29, 577
Hpy188I	TCNGA	2 cut(s)	58, 568
Hpy188III	TCNNGA	6 cut(s)	500, 587, 630, 670, 686, 742
Hpy8I	GTNNAC	2 cut(s)	29, 577
HpyAV	CCTTC	3 cut(s)	628, 814, 976
HpyCH4III	ACNGT	4 cut(s)	89, 212, 650, 1062
HpyCH4IV	ACGT	2 cut(s)	121, 946
HpyCH4V	TGCA	7 cut(s)	62, 158, 473, 700, 725, 731, 938
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 231
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	2 cut(s)	121, 946
Hsp92I	GRCGYC	1 cut(s)	857
Hsp92II	CATG	5 cut(s)	230, 689, 745, 897, 938
Kzo9I	GATC	3 cut(s)	35, 53, 484
LmnI	GCTCC	2 cut(s)	523, 883
Lsp1109I	GCAGC	5 cut(s)	74, 457, 712, 715, 883
LweI	GCATC	3 cut(s)	49, 734, 822
MaeI	CTAG	2 cut(s)	492, 1020
MaeII	ACGT	2 cut(s)	121, 946
MaeIII	GTNAC	2 cut(s)	83, 965
MalI	GATC	3 cut(s)	37, 55, 486
MboI	GATC	3 cut(s)	35, 53, 484
MboII	GAAGA	6 cut(s)	342, 371, 416, 611, 631, 991
MfeI	CAATTG	1 cut(s)	277
MhlI	GDGCHC	3 cut(s)	648, 695, 1106
MluCI	AATT	7 cut(s)	238, 277, 308, 438, 505, 654, 765
MmeI	TCCRAC	1 cut(s)	929
MnlI	CCTC	7 cut(s)	141, 183, 307, 325, 532, 682, 940
Mph1103I	ATGCAT	1 cut(s)	727
MseI	TTAA	2 cut(s)	441, 713
MslI	CAYNNNNRTG	2 cut(s)	492, 892
MspI	CCGG	2 cut(s)	175, 1074
MunI	CAATTG	1 cut(s)	277
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	164, 231
NcoI	CCATGG	1 cut(s)	893
NdeII	GATC	3 cut(s)	35, 53, 484
NlaIII	CATG	5 cut(s)	230, 689, 745, 897, 938
NlaIV	GGNNCC	2 cut(s)	885, 899
NmuCI	GTSAC	1 cut(s)	83
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	1 cut(s)	938
NspV	TTCGAA	1 cut(s)	794
OliI	CACNNNNGTG	1 cut(s)	492
PaeR7I	CTCGAG	1 cut(s)	298
PagI	TCATGA	2 cut(s)	685, 741
PfeI	GAWTC	2 cut(s)	362, 734
PkrI	GCNGC	5 cut(s)	64, 472, 702, 705, 873
Ppu21I	YACGTR	1 cut(s)	947
PshBI	ATTAAT	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	885, 899
PspXI	VCTCGAGB	1 cut(s)	298
PstI	CTGCAG	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	170
RseI	CAYNNNNRTG	2 cut(s)	492, 892
SaqAI	TTAA	2 cut(s)	441, 713
SatI	GCNGC	5 cut(s)	63, 471, 701, 704, 872
Sau3AI	GATC	3 cut(s)	35, 53, 484
SduI	GDGCHC	3 cut(s)	648, 695, 1106
SfaNI	GCATC	3 cut(s)	49, 734, 822
SfcI	CTRYAG	2 cut(s)	396, 729
Sfr274I	CTCGAG	1 cut(s)	298
SfuI	TTCGAA	1 cut(s)	794
SlaI	CTCGAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	492, 892
SmlI	CTYRAG	2 cut(s)	298, 587
SmoI	CTYRAG	2 cut(s)	298, 587
Sse9I	AATT	7 cut(s)	238, 277, 308, 438, 505, 654, 765
SsiI	CCGC	2 cut(s)	130, 366
SspMI	CTAG	2 cut(s)	492, 1020
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	4 cut(s)	89, 212, 650, 1062
TaiI	ACGT	2 cut(s)	124, 949
TaqI	TCGA	8 cut(s)	52, 116, 299, 317, 642, 669, 794, 863
TasI	AATT	7 cut(s)	238, 277, 308, 438, 505, 654, 765
TfiI	GAWTC	2 cut(s)	362, 734
Tru1I	TTAA	2 cut(s)	441, 713
Tru9I	TTAA	2 cut(s)	441, 713
TscAI	CASTG	1 cut(s)	823
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	5 cut(s)	62, 470, 700, 703, 871
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	9 cut(s)	86, 417, 498, 585, 612, 693, 730, 765, 881
TspRI	CASTG	1 cut(s)	823
VspI	ATTAAT	1 cut(s)	441
XapI	RAATTY	2 cut(s)	238, 505
XceI	RCATGY	1 cut(s)	938
XhoI	CTCGAG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	576
XspI	CTAG	2 cut(s)	492, 1020
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.