Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008573

Physical Location & Seq

Genomic Coordinates Forward (+)

72454117 .. 72458805

Gene Structure 4689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52445

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGTTACATATGTGATTTCTGTGGGGATCAAAGGTCCATGGTGTATTGCCGGTCTGATGCTGCTTGCTTATGTTTATCATGTGACCGAAATGTCCACTCTGCTAATGCCTTGTCCAGGCGTCACTCGAGAACGCTTCTTTGCGAAAGATGCAATTCACAACCAGCATTAGTAAGATGTGCAGAAGAGAGAGTGTCTCTTTGTCAGAATTGTGATTGGATGGGTCATGGTGCATCTACTTCAGCTGCATCACACAAGAGGCAAACACTCAATTGTTACTCTGGCTGCCCATCAGCTTCTGAACTGTCGTCTATCTGGTCATTCGTTCTAGAGTTACCTTCCGCAGCCGCAGGTGAATCTGCTTGTGAGCAGGAAATGGGGTTGATGAGCATTGCCGAGAACAGCACTGGAAGTGCTTGGAGCCCCCCTGAAAATAACACCAGAGAGAATGCATCTGATAAATTTGAAGTCAGTGACGTGGGTGCCATGGATAAGTCTGATGGTTTAGTTGGTTCCTCTTCGGTGCCTGCACTTAACTCAGCTCCTCAGGTTGTTGGTCAGGTGCCTGGATCTGCAAATTCTACATTGCCCAAGTTATACTGTCACGGAACCAAAAGCCCAGGGCTCTGTGAAGATGATGACCTTTATGGCGATTTTGATATGGATGAAATGGATCTGAGTCTTGAAAATTATGACGAACTATTTGGTGTATCTCTCAATCACTCTGAAGAGCTTTTCAAGAATGGTGGGATTGATAGTTTGTTTGGGGCAAGGAACATGTCCAGGGCTCAGGAATTAATTGCTGCTGAGGGGTCATCAATTGGACGGGTAAATGCATTGCAGCAGCCAGCATGCAGTACCGCAGCATCTGCGGATTCTGTAATGAGTACAAAAACTGAACCAATTGTTTCTTTTGTGCCAAAGCAAGCACAGTCAAACCTTTCATTTTCGGGTGTCACCGGAGAGAGTAGTGCTGGAGATTGTCAAGATTGTGGGGCTTCCTCAATGCTACTGATGGGAGAGCCTCCATGGTGTCCTCCAGGCCCTGAGAGTTCCTTCCAGTCTGCTAATCGAAGTAATGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCACGCAAACTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0007623 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

375

Amino Acids

39.96

Weight (kDa)

4.83

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ANCHR-like_BBOX	PF22586	47 - 86	4.9e-06	ANCHR-like B-box zinc-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008573)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07650 AT3G07650 AT3G07650 AT3G07650 AT5G48250
fragaria_vesca	FvH4_6g40380 FvH4_6g40380 FvH4_6g40380 FvH4_6g40380
malus_domestica	MD09G1131800.v1.1 MD17G1119500.v1.1
prunus_persica	Prupe.3G194500_v2.0.a1 Prupe.3G194500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0155581
rosa_laevigata	RLG00000020847
rosa_multiflora	Rmu_sc0003971.1_g000003
rosa_rugosa	Rorug02G0448200 Rorug02G0448300
rosa_samantha	Rh2AG514500 Rh2BG525300 Rh2CG499400 Rh2DG534200
rosa_wichuraiana	Rw2G042270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	341
AccB1I	GGYRCC	3 cut(s)	482, 523, 562
AciI	CCGC	4 cut(s)	342, 348, 861, 872
AclWI	GGATC	3 cut(s)	36, 577, 681
AcsI	RAATTY	2 cut(s)	461, 577
AcuI	CTGAAG	2 cut(s)	225, 747
AcyI	GRCGYC	1 cut(s)	121
AfaI	GTAC	2 cut(s)	859, 889
AfiI	CCNNNNNNNGG	1 cut(s)	117
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	3 cut(s)	467, 686, 739
AhlI	ACTAGT	1 cut(s)	1120
AjiI	CACGTC	1 cut(s)	478
AjnI	CCWGG	5 cut(s)	116, 565, 619, 782, 1039
AluBI	AGCT	4 cut(s)	245, 296, 542, 733
AluI	AGCT	4 cut(s)	245, 296, 542, 733
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	36, 577, 681
AlwNI	CAGNNNCTG	3 cut(s)	299, 869, 1046
Ama87I	CYCGRG	1 cut(s)	127
AoxI	GGCC	1 cut(s)	1042
ApeKI	GCWGC	8 cut(s)	62, 245, 285, 344, 803, 841, 844, 863
ApoI	RAATTY	2 cut(s)	461, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AseI	ATTAAT	1 cut(s)	797
AspS9I	GGNCC	2 cut(s)	36, 1043
AsuHPI	GGTGA	2 cut(s)	365, 949
AvaI	CYCGRG	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	36
AxyI	CCTNAGG	1 cut(s)	546
BanI	GGYRCC	3 cut(s)	482, 523, 562
BanII	GRGCYC	3 cut(s)	425, 627, 790
BbvCI	CCTCAGC	1 cut(s)	807
BbvI	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BccI	CCATC	4 cut(s)	214, 298, 494, 1009
BciT130I	CCWGG	5 cut(s)	118, 567, 621, 784, 1041
BcoDI	GTCTC	1 cut(s)	201
BcuI	ACTAGT	1 cut(s)	1120
BfaI	CTAG	2 cut(s)	329, 1121
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	9 cut(s)	63, 246, 286, 345, 348, 804, 842, 845, 864
BlsI	GCNGC	9 cut(s)	64, 247, 287, 346, 349, 805, 843, 846, 865
Bme1390I	CCNGG	5 cut(s)	118, 567, 621, 784, 1041
Bme18I	GGWCC	1 cut(s)	36
BmeT110I	CYCGRG	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	36, 1043
BmiI	GGNNCC	6 cut(s)	422, 484, 514, 525, 564, 610
BmrFI	CCNGG	5 cut(s)	118, 567, 621, 784, 1041
BmsI	GCATC	6 cut(s)	49, 140, 242, 257, 461, 875
BplI	GAGNNNNNCTC	2 cut(s)	181, 213
BpmI	CTGGAG	2 cut(s)	996, 1023
Bpu10I	CCTNAGC	2 cut(s)	789, 807
BsaHI	GRCGYC	1 cut(s)	121
BsaJI	CCNNGG	6 cut(s)	39, 486, 619, 620, 783, 1028
BsaWI	WCCGGW	1 cut(s)	959
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	51
Bse1I	ACTGG	2 cut(s)	412, 1060
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	3 cut(s)	390, 584, 836
BseBI	CCWGG	5 cut(s)	118, 567, 621, 784, 1041
BseDI	CCNNGG	6 cut(s)	39, 486, 619, 620, 783, 1028
BseGI	GGATG	2 cut(s)	225, 670
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMI	GCAATG	3 cut(s)	390, 584, 836
BseMII	CTCAG	6 cut(s)	552, 560, 668, 798, 803, 1038
BseNI	ACTGG	2 cut(s)	412, 1060
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BsgI	GTGCAG	2 cut(s)	201, 513
BshFI	GGCC	1 cut(s)	1044
BshNI	GGYRCC	3 cut(s)	482, 523, 562
BsiHKCI	CYCGRG	1 cut(s)	127
BsiSI	CCGG	2 cut(s)	52, 960
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	1044
BsoBI	CYCGRG	1 cut(s)	127
Bsp1286I	GDGCHC	3 cut(s)	425, 627, 790
Bsp143I	GATC	3 cut(s)	28, 569, 673
Bsp19I	CCATGG	3 cut(s)	39, 486, 1028
BspACI	CCGC	4 cut(s)	342, 348, 861, 872
BspANI	GGCC	1 cut(s)	1044
BspCNI	CTCAG	6 cut(s)	551, 559, 669, 799, 802, 1039
BspLI	GGNNCC	6 cut(s)	422, 484, 514, 525, 564, 610
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	3 cut(s)	36, 577, 681
BspQI	GCTCTTC	1 cut(s)	723
BspT107I	GGYRCC	3 cut(s)	482, 523, 562
BsrDI	GCAATG	3 cut(s)	390, 584, 836
BsrFI	RCCGGY	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	412, 1060
BssAI	RCCGGY	1 cut(s)	51
BssECI	CCNNGG	6 cut(s)	39, 486, 619, 620, 783, 1028
BssMI	GATC	3 cut(s)	28, 569, 673
BssNI	GRCGYC	1 cut(s)	121
BssT1I	CCWWGG	3 cut(s)	39, 486, 1028
Bst2UI	CCWGG	5 cut(s)	118, 567, 621, 784, 1041
Bst4CI	ACNGT	3 cut(s)	306, 602, 933
Bst6I	CTCTTC	3 cut(s)	180, 523, 723
BstACI	GRCGYC	1 cut(s)	121
BstAPI	GCANNNNNTGC	1 cut(s)	869
BstC8I	GCNNGC	6 cut(s)	67, 528, 849, 853, 927, 1114
BstDEI	CTNAG	6 cut(s)	538, 546, 677, 789, 807, 1047
BstDSI	CCRYGG	3 cut(s)	39, 486, 1028
BstENI	CCTNNNNNAGG	1 cut(s)	115
BstF5I	GGATG	2 cut(s)	225, 670
BstKTI	GATC	3 cut(s)	31, 572, 676
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	28, 569, 673
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 869
BstNI	CCWGG	5 cut(s)	118, 567, 621, 784, 1041
BstNSI	RCATGY	2 cut(s)	781, 855
BstSCI	CCNGG	5 cut(s)	116, 565, 619, 782, 1039
BstV1I	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
BstX2I	RGATCY	2 cut(s)	569, 673
BstYI	RGATCY	2 cut(s)	569, 673
Bsu36I	CCTNAGG	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	1044
BtgI	CCRYGG	3 cut(s)	39, 486, 1028
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	225, 670
BtsIMutI	CAGTG	2 cut(s)	405, 478
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	6 cut(s)	67, 528, 849, 853, 927, 1114
CaiI	CAGNNNCTG	3 cut(s)	299, 869, 1046
Cfr10I	RCCGGY	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	36, 1043
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	858, 888
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	7 cut(s)	40, 81, 227, 487, 778, 852, 1029
CviQI	GTAC	2 cut(s)	858, 888
DdeI	CTNAG	6 cut(s)	538, 546, 677, 789, 807, 1047
DpnI	GATC	3 cut(s)	30, 571, 675
DpnII	GATC	3 cut(s)	28, 569, 673
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	180, 523, 723
EarI	CTCTTC	3 cut(s)	180, 523, 723
Eco130I	CCWWGG	3 cut(s)	39, 486, 1028
Eco24I	GRGCYC	3 cut(s)	425, 627, 790
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	225, 747
Eco81I	CCTNAGG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	1043
EcoRII	CCWGG	5 cut(s)	116, 565, 619, 782, 1039
EcoT14I	CCWWGG	3 cut(s)	39, 486, 1028
EcoT22I	ATGCAT	2 cut(s)	454, 838
EcoT38I	GRGCYC	3 cut(s)	425, 627, 790
ErhI	CCWWGG	3 cut(s)	39, 486, 1028
FaeI	CATG	7 cut(s)	43, 84, 230, 490, 781, 855, 1032
FatI	CATG	7 cut(s)	39, 80, 226, 486, 777, 851, 1028
FauNDI	CATATG	1 cut(s)	11
Fnu4HI	GCNGC	9 cut(s)	63, 246, 286, 345, 348, 804, 842, 845, 864
FokI	GGATG	2 cut(s)	232, 677
FriOI	GRGCYC	3 cut(s)	425, 627, 790
Fsp4HI	GCNGC	9 cut(s)	63, 246, 286, 345, 348, 804, 842, 845, 864
FspBI	CTAG	2 cut(s)	329, 1121
GluI	GCNGC	9 cut(s)	63, 246, 286, 345, 348, 804, 842, 845, 864
GsuI	CTGGAG	2 cut(s)	996, 1023
HaeIII	GGCC	1 cut(s)	1044
HapII	CCGG	2 cut(s)	52, 960
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	121
Hin1II	CATG	7 cut(s)	43, 84, 230, 490, 781, 855, 1032
HinfI	GANTC	3 cut(s)	356, 679, 875
HpaII	CCGG	2 cut(s)	52, 960
HphI	GGTGA	2 cut(s)	365, 949
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	7 cut(s)	58, 207, 301, 457, 499, 678, 727
Hpy188III	TCNNGA	6 cut(s)	129, 329, 683, 739, 791, 986
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	3 cut(s)	348, 1066, 1102
HpyCH4III	ACNGT	3 cut(s)	306, 602, 933
HpyCH4IV	ACGT	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 869
HpyF3I	CTNAG	6 cut(s)	538, 546, 677, 789, 807, 1047
HpySE526I	ACGT	1 cut(s)	477
Hsp92I	GRCGYC	1 cut(s)	121
Hsp92II	CATG	7 cut(s)	43, 84, 230, 490, 781, 855, 1032
Kzo9I	GATC	3 cut(s)	28, 569, 673
LguI	GCTCTTC	1 cut(s)	723
LmnI	GCTCC	2 cut(s)	420, 547
Lsp1109I	GCAGC	8 cut(s)	49, 232, 272, 356, 790, 853, 856, 875
LweI	GCATC	6 cut(s)	49, 140, 242, 257, 461, 875
MaeI	CTAG	2 cut(s)	329, 1121
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	9 cut(s)	5, 83, 122, 275, 333, 473, 602, 955, 1091
MalI	GATC	3 cut(s)	30, 571, 675
MboI	GATC	3 cut(s)	28, 569, 673
MboII	GAAGA	5 cut(s)	197, 510, 644, 740, 1117
MfeI	CAATTG	3 cut(s)	271, 819, 903
MflI	RGATCY	2 cut(s)	569, 673
MhlI	GDGCHC	3 cut(s)	425, 627, 790
MlyI	GAGTC	1 cut(s)	688
MnlI	CCTC	7 cut(s)	252, 526, 555, 802, 1012, 1035, 1047
Mph1103I	ATGCAT	2 cut(s)	454, 838
MseI	TTAA	2 cut(s)	534, 797
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	52, 960
MspR9I	CCNGG	5 cut(s)	118, 567, 621, 784, 1041
MunI	CAATTG	3 cut(s)	271, 819, 903
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	5 cut(s)	118, 567, 621, 784, 1041
MwoI	GCNNNNNNNGC	2 cut(s)	150, 869
NcoI	CCATGG	3 cut(s)	39, 486, 1028
NdeI	CATATG	1 cut(s)	11
NdeII	GATC	3 cut(s)	28, 569, 673
NlaIII	CATG	7 cut(s)	43, 84, 230, 490, 781, 855, 1032
NlaIV	GGNNCC	6 cut(s)	422, 484, 514, 525, 564, 610
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	5 cut(s)	83, 122, 473, 602, 955
NsiI	ATGCAT	2 cut(s)	454, 838
NspI	RCATGY	2 cut(s)	781, 855
PaeI	GCATGC	1 cut(s)	855
PaeR7I	CTCGAG	1 cut(s)	127
PaqCI	CACCTGC	1 cut(s)	341
PasI	CCCWGGG	1 cut(s)	620
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	1 cut(s)	723
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	2 cut(s)	356, 875
PkrI	GCNGC	9 cut(s)	64, 247, 287, 346, 349, 805, 843, 846, 865
PleI	GAGTC	1 cut(s)	687
PpsI	GAGTC	1 cut(s)	687
PscI	ACATGT	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	797
Psp6I	CCWGG	5 cut(s)	116, 565, 619, 782, 1039
PspGI	CCWGG	5 cut(s)	116, 565, 619, 782, 1039
PspN4I	GGNNCC	6 cut(s)	422, 484, 514, 525, 564, 610
PspPI	GGNCC	2 cut(s)	36, 1043
PstNI	CAGNNNCTG	3 cut(s)	299, 869, 1046
PsuI	RGATCY	2 cut(s)	569, 673
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	859, 889
RsaNI	GTAC	2 cut(s)	858, 888
SapI	GCTCTTC	1 cut(s)	723
SaqAI	TTAA	2 cut(s)	534, 797
SatI	GCNGC	9 cut(s)	63, 246, 286, 345, 348, 804, 842, 845, 864
Sau3AI	GATC	3 cut(s)	28, 569, 673
Sau96I	GGNCC	2 cut(s)	36, 1043
SchI	GAGTC	1 cut(s)	688
ScrFI	CCNGG	5 cut(s)	118, 567, 621, 784, 1041
SduI	GDGCHC	3 cut(s)	425, 627, 790
SfaNI	GCATC	6 cut(s)	49, 140, 242, 257, 461, 875
Sfr274I	CTCGAG	1 cut(s)	127
SinI	GGWCC	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	1120
SphI	GCATGC	1 cut(s)	855
SsiI	CCGC	4 cut(s)	342, 348, 861, 872
SspMI	CTAG	2 cut(s)	329, 1121
StyD4I	CCNGG	5 cut(s)	116, 565, 619, 782, 1039
StyI	CCWWGG	3 cut(s)	39, 486, 1028
TaaI	ACNGT	3 cut(s)	306, 602, 933
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	2 cut(s)	128, 1072
TaqII	GACCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	887
TauI	GCSGC	1 cut(s)	350
TfiI	GAWTC	2 cut(s)	356, 875
Tru1I	TTAA	2 cut(s)	534, 797
Tru9I	TTAA	2 cut(s)	534, 797
TscAI	CASTG	2 cut(s)	412, 478
TseFI	GTSAC	5 cut(s)	83, 122, 473, 602, 955
TseI	GCWGC	8 cut(s)	62, 245, 285, 344, 803, 841, 844, 863
Tsp45I	GTSAC	5 cut(s)	83, 122, 473, 602, 955
TspDTI	ATGAA	2 cut(s)	681, 933
TspGWI	ACGGA	1 cut(s)	621
TspRI	CASTG	2 cut(s)	412, 478
VpaK11BI	GGWCC	1 cut(s)	36
VspI	ATTAAT	1 cut(s)	797
XagI	CCTNNNNNAGG	1 cut(s)	115
XapI	RAATTY	2 cut(s)	461, 577
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	2 cut(s)	781, 855
XhoI	CTCGAG	1 cut(s)	127
XspI	CTAG	2 cut(s)	329, 1121
Zsp2I	ATGCAT	2 cut(s)	454, 838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.