Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004082

Physical Location & Seq

Genomic Coordinates Forward (+)

2476306 .. 2478715

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07760.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACCAGAGAACATCCTCCCGAGCCTCTTGATTTCTTCATCTGGACTGTTGAGGATGTTGGGTCTTGGCTCGAGGAGATAAACCTTGGGGGCTACCGCCAGATTTTCAAAGAAAATGGTGTCAATGGAGAATATCTAGAAAGCATGTCTGTGTTTACTACCGAGCAGATCCTTCACTTCATAAGGAGGCATCACATGAAGTGGGGAGACTTCATCACCCTCTGTAAAGAACTCAGAAGGATTAAAGTGGCTTGCTTGAAAGGTGAGCAGAGAGTTAGACGGCCATGGTGGGCACCGTCTTGTCTATCCGTAGTCTTTGTTAAGGCAGCCAAACGCAACCGACAGTCTCGTGTTGTATCTCTCAAGCTTGAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

125

Amino Acids

14.82

Weight (kDa)

9.37

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	14 - 50	6e-07	SAM domain (Sterile alpha motif)
SAM_2	PF07647	15 - 50	1e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760
fragaria_vesca	FvH4_5g30980 FvH4_6g40920
malus_domestica	MD09G1123200.v1.1 MD17G1113700.v1.1
prunus_persica	Prupe.3G200700_v2.0.a1
pyrus_communis	pycom17g10540
rosa_chinensis	RchiOBHm_Chr2g0156501 RchiOBHm_Chr7g0226381
rosa_laevigata	RLG00000001744 RLG00000020918
rosa_multiflora	Rmu_sc0003542.1_g000006 Rmu_sc0005392.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232890
rosa_rugosa	Rorug02G0453800 Rorug02G0453900 Rorug02G0453900 Rorug07G0236800 Rorug07G0236900
rosa_samantha	Rh2BG532200 Rh7AG383800 Rh7CG403400 Rh7DG382200
rosa_wichuraiana	Rw2G042860 Rw7G032170 Rw7G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	1 cut(s)	97
AclWI	GGATC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	109, 259, 371
AluBI	AGCT	1 cut(s)	367
AluI	AGCT	1 cut(s)	367
Alw26I	GTCTC	2 cut(s)	201, 351
AlwI	GGATC	1 cut(s)	163
Ama87I	CYCGRG	2 cut(s)	20, 71
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	208, 275
AvaI	CYCGRG	2 cut(s)	20, 71
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	201, 351
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
BmeT110I	CYCGRG	2 cut(s)	20, 71
BmiI	GGNNCC	1 cut(s)	294
BmsI	GCATC	1 cut(s)	199
BpuEI	CTTGAG	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	85, 284
BseDI	CCNNGG	2 cut(s)	85, 284
BseGI	GGATG	2 cut(s)	13, 61
BseMII	CTCAG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	292
BsiHKCI	CYCGRG	2 cut(s)	20, 71
BsmAI	GTCTC	2 cut(s)	201, 351
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	2 cut(s)	20, 71
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	1 cut(s)	97
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	292
BssECI	CCNNGG	2 cut(s)	85, 284
BssMI	GATC	1 cut(s)	168
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	2 cut(s)	85, 284
Bst2BI	CACGAG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	49, 297, 345
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	13, 61
BstKTI	GATC	1 cut(s)	171
BstMAI	GTCTC	2 cut(s)	201, 351
BstMBI	GATC	1 cut(s)	168
BstNSI	RCATGY	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	283
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	2 cut(s)	13, 61
Cac8I	GCNNGC	1 cut(s)	253
CviAII	CATG	3 cut(s)	145, 196, 285
CviJI	RGCY	7 cut(s)	25, 70, 93, 251, 283, 329, 367
CviKI_1	RGCY	7 cut(s)	25, 70, 93, 251, 283, 329, 367
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
EaeI	YGGCCR	1 cut(s)	281
Eco130I	CCWWGG	2 cut(s)	85, 284
Eco88I	CYCGRG	2 cut(s)	20, 71
EcoT14I	CCWWGG	2 cut(s)	85, 284
ErhI	CCWWGG	2 cut(s)	85, 284
FaeI	CATG	3 cut(s)	148, 199, 288
FaiI	YATR	4 cut(s)	146, 182, 197, 286
FatI	CATG	3 cut(s)	144, 195, 284
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	3 cut(s)	148, 199, 288
HindIII	AAGCTT	1 cut(s)	365
HinfI	GANTC	1 cut(s)	371
HphI	GGTGA	2 cut(s)	208, 275
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	5 cut(s)	20, 29, 43, 137, 375
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	2 cut(s)	182, 231
HpyCH4III	ACNGT	3 cut(s)	49, 297, 345
HpyF3I	CTNAG	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	148, 199, 288
Kzo9I	GATC	1 cut(s)	168
LpnPI	CCDG	3 cut(s)	19, 28, 113
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	137
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	1 cut(s)	28
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	27, 36, 46, 67, 180, 230
MseI	TTAA	2 cut(s)	243, 321
MslI	CAYNNNNRTG	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	3 cut(s)	148, 199, 288
NlaIV	GGNNCC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	294
PspXI	VCTCGAGB	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	168
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	243, 321
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	295
SetI	ASST	3 cut(s)	87, 265, 369
SfaNI	GCATC	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	2 cut(s)	71, 362
SmoI	CTYRAG	2 cut(s)	71, 362
SsiI	CCGC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	85, 284
TaaI	ACNGT	3 cut(s)	49, 297, 345
TaqI	TCGA	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	2 cut(s)	243, 321
Tru9I	TTAA	2 cut(s)	243, 321
TseI	GCWGC	1 cut(s)	326
TspDTI	ATGAA	4 cut(s)	28, 169, 202, 212
TspGWI	ACGGA	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	148
XhoI	CTCGAG	1 cut(s)	71
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.