Rmu_sc0005392.1_g000008

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005392.1
OG0004082
Physical Location & Seq
Forward (+)
38712 .. 41504
2793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005392.1_g000008.1.cds

Sequence Viewer

Length: 414 bp
ctgcacggtgttacaaagggggtaatggttagggagatgagcagagagcagccaccggagcctcttgatttctttatttggactgttgaggatgttggtttatggttagaagagataaatctgggcagttaccggcaaactttcaaggaaaatggtgtcaatggagagtacctagaaggcatgtctatgttcactactgagcagattcttcgctttataagacgatgccacatgaaatggggagattttatcacactgtgtaaggagctaaggcgaattaaagtcgcttgcctgaaaggagagcaaaaagtccgcaggccatggtgggctccgtcttgcctctcaatagtatttgtcaaggtggcaaagcgtaacagacaatcacgcgttgtttccttgaagctggaaccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

137

Amino Acids

16.16

Weight (kDa)

9.51

Isoelectric Point (pI)

63.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 313
AdeI CACNNNGTG 1 cut(s) 258
AfaI GTAC 1 cut(s) 170
AflIII ACRYGT 1 cut(s) 385
AgsI TTSAA 2 cut(s) 145, 400
AluBI AGCT 2 cut(s) 268, 403
AluI AGCT 2 cut(s) 268, 403
AoxI GGCC 1 cut(s) 317
ApeKI GCWGC 1 cut(s) 49
BanII GRGCYC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 61
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BfaI CTAG 1 cut(s) 173
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
BmiI GGNNCC 3 cut(s) 60, 330, 408
BmsI GCATC 1 cut(s) 215
Bpu10I CCTNAGC 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 55
Bse118I RCCGGY 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 1 cut(s) 319
BsiSI CCGG 2 cut(s) 56, 133
BsnI GGCC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 190
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 3 cut(s) 60, 330, 408
BsrFI RCCGGY 1 cut(s) 132
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 8, 85, 258
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 289, 317
BstDEI CTNAG 2 cut(s) 198, 269
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 97
BstFNI CGCG 1 cut(s) 387
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 184
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 61
BsuRI GGCC 1 cut(s) 319
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 289, 317
Cfr10I RCCGGY 1 cut(s) 132
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 181, 232, 321
CviJI RGCY 6 cut(s) 52, 61, 268, 319, 329, 403
CviKI_1 RGCY 6 cut(s) 52, 61, 268, 319, 329, 403
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 2 cut(s) 198, 269
DraIII CACNNNGTG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 320
FaeI CATG 3 cut(s) 184, 235, 324
FaiI YATR 7 cut(s) 103, 182, 188, 218, 233, 322, 412
FatI CATG 3 cut(s) 180, 231, 320
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 1 cut(s) 104
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 50
FspBI CTAG 1 cut(s) 173
GluI GCNGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 319
HapII CCGG 2 cut(s) 56, 133
Hin1II CATG 3 cut(s) 184, 235, 324
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 56, 133
Hpy166II GTNNAC 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 8, 85, 258
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 2 cut(s) 198, 269
Hsp92II CATG 3 cut(s) 184, 235, 324
LmnI GCTCC 3 cut(s) 58, 265, 334
LpnPI CCDG 6 cut(s) 69, 107, 146, 301, 305, 389
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 215
MaeI CTAG 1 cut(s) 173
MaeIII GTNAC 3 cut(s) 10, 128, 371
MboII GAAGA 2 cut(s) 122, 200
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 276
MluI ACGCGT 1 cut(s) 385
MnlI CCTC 3 cut(s) 72, 82, 350
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 2 cut(s) 56, 133
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 320
NlaIII CATG 3 cut(s) 184, 235, 324
NlaIV GGNNCC 3 cut(s) 60, 330, 408
NspI RCATGY 1 cut(s) 184
PfeI GAWTC 1 cut(s) 205
PkrI GCNGC 1 cut(s) 51
PsiI TTATAA 1 cut(s) 218
PspN4I GGNNCC 3 cut(s) 60, 330, 408
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 1 cut(s) 50
SduI GDGCHC 1 cut(s) 331
SetI ASST 4 cut(s) 174, 270, 363, 405
SfaNI GCATC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 276
SsiI CCGC 1 cut(s) 313
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 320
TaaI ACNGT 3 cut(s) 8, 85, 258
TasI AATT 1 cut(s) 276
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 261
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 1 cut(s) 321
TspRI CASTG 1 cut(s) 261
XceI RCATGY 1 cut(s) 184
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.