Rh2BG532200

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0004082
Physical Location & Seq
Reverse (-)
74099077 .. 74102272
3196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG532200.1

Sequence Viewer

Length: 357 bp
ATGCATCTCATGTGTTCTTTCCCTTGTGAACAGGATGTTGGTTTATGGTTAGAAGAGATAAATCTGGGCAGTTACCGGCAAACTTTCAAGGAAAATGGTGTCAATGGAGAGTACCTAGAAGGCATGTCTATGTTCACTACTGAGCAGATTCTTCGCTTTATAAGACGATGCCACATGAAATGGGGAGATTTTATCACACTGTGTAAGGAGCTAAGGCGAATTAAAGTCGCTTGCCTGAAAGGAGAGCAAAAAGTCCGCAGGCCATGGTGGGCTCCGTCTTGCCTCTCAATAGTATTTGTCAAGGTGGCAAAGCGTAACAGACAATCACGCGTTGTTTCCTTGAAGCTGGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

118

Amino Acids

13.96

Weight (kDa)

9.47

Isoelectric Point (pI)

70.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_2 PF07647 10 - 44 7.9e-06 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AccII CGCG 1 cut(s) 330
AciI CCGC 1 cut(s) 256
AdeI CACNNNGTG 1 cut(s) 201
AfaI GTAC 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 328
AgsI TTSAA 2 cut(s) 88, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 21, 53
AluBI AGCT 2 cut(s) 211, 346
AluI AGCT 2 cut(s) 211, 346
AoxI GGCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 274
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BfaI CTAG 1 cut(s) 116
BmiI GGNNCC 2 cut(s) 273, 351
BmsI GCATC 2 cut(s) 13, 158
Bpu10I CCTNAGC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 263
Bse118I RCCGGY 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 262
BsiSI CCGG 1 cut(s) 76
BsnI GGCC 1 cut(s) 262
Bsp1286I GDGCHC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 263
BspACI CCGC 1 cut(s) 256
BspANI GGCC 1 cut(s) 262
BspCNI CTCAG 1 cut(s) 133
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 2 cut(s) 273, 351
BsrFI RCCGGY 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 1 cut(s) 48
BstC8I GCNNGC 2 cut(s) 232, 260
BstDEI CTNAG 2 cut(s) 141, 212
BstDSI CCRYGG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 127
BstUI CGCG 1 cut(s) 330
BsuRI GGCC 1 cut(s) 262
BtgI CCRYGG 1 cut(s) 263
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 197
Cac8I GCNNGC 2 cut(s) 232, 260
Cfr10I RCCGGY 1 cut(s) 75
Csp6I GTAC 1 cut(s) 112
CviAII CATG 4 cut(s) 10, 124, 175, 264
CviJI RGCY 4 cut(s) 211, 262, 272, 346
CviKI_1 RGCY 4 cut(s) 211, 262, 272, 346
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 141, 212
DraIII CACNNNGTG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 263
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 4 cut(s) 13, 127, 178, 267
FaiI YATR 8 cut(s) 11, 46, 125, 131, 161, 176, 265, 355
FatI CATG 4 cut(s) 9, 123, 174, 263
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 274
FspBI CTAG 1 cut(s) 116
HaeIII GGCC 1 cut(s) 262
HapII CCGG 1 cut(s) 76
Hin1II CATG 4 cut(s) 13, 127, 178, 267
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 29, 135
Hpy8I GTNNAC 2 cut(s) 29, 135
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 141, 212
Hsp92II CATG 4 cut(s) 13, 127, 178, 267
LmnI GCTCC 2 cut(s) 208, 277
LpnPI CCDG 6 cut(s) 17, 50, 89, 244, 248, 332
LweI GCATC 2 cut(s) 13, 158
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 71, 314
MboII GAAGA 2 cut(s) 65, 143
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 1 cut(s) 219
MluI ACGCGT 1 cut(s) 328
MnlI CCTC 1 cut(s) 293
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 76
MvnI CGCG 1 cut(s) 330
NcoI CCATGG 1 cut(s) 263
NlaIII CATG 4 cut(s) 13, 127, 178, 267
NlaIV GGNNCC 2 cut(s) 273, 351
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 127
PfeI GAWTC 1 cut(s) 148
PsiI TTATAA 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 273, 351
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 222
SduI GDGCHC 1 cut(s) 274
SetI ASST 4 cut(s) 117, 213, 306, 348
SfaNI GCATC 2 cut(s) 13, 158
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 219
SsiI CCGC 1 cut(s) 256
SspMI CTAG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 201
TasI AATT 1 cut(s) 219
TfiI GAWTC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 1 cut(s) 204
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 264
TspRI CASTG 1 cut(s) 204
XceI RCATGY 1 cut(s) 127
XspI CTAG 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.