Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004082

Physical Location & Seq

Genomic Coordinates Forward (+)

9490175 .. 9492388

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1123200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATTGAAGGTGTTAAAAGGGAAATGATTAGGGAGATGAGCAAAGAGCACCCACCCGAGCCTCTTGATTTCTTCATTTGGACTGTTGAGGATGTTGGTTTGTGGTTGGAAGAAATAAAACTGGGCAGTTACCGGCAAACTTTTAAAGAAAATGGTGTCAATGGAGAATACCTGGAAGGCATGTCAATGTTTACTACCGAGCAGATCCTTCGGTTTATAAGACGTTGCCACATGAAATGGGGAGATTTTATCACGCTGTGTAAGGAACTAAGGCGAATTAAAGTGGCTTGCCTAAAAGGGGAGCAAAAGGTCCGCAGGCCATGGTGGGCGCCGTCTTGCCTCTCAGTAGTATTCGTCAAGGTGGCAAAGCGTAACAGACAATCACGTGTTGTTTCCTTGAAGCTGGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

138

Amino Acids

16.31

Weight (kDa)

9.44

Isoelectric Point (pI)

64.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	26 - 63	4.5e-07	SAM domain (Sterile alpha motif)
SAM_2	PF07647	27 - 63	1.3e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760
fragaria_vesca	FvH4_5g30980 FvH4_6g40920
malus_domestica	MD09G1123200.v1.1 MD17G1113700.v1.1
prunus_persica	Prupe.3G200700_v2.0.a1
pyrus_communis	pycom17g10540
rosa_chinensis	RchiOBHm_Chr2g0156501 RchiOBHm_Chr7g0226381
rosa_laevigata	RLG00000001744 RLG00000020918
rosa_multiflora	Rmu_sc0003542.1_g000006 Rmu_sc0005392.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232890
rosa_rugosa	Rorug02G0453800 Rorug02G0453900 Rorug02G0453900 Rorug07G0236800 Rorug07G0236900
rosa_samantha	Rh2BG532200 Rh7AG383800 Rh7CG403400 Rh7DG382200
rosa_wichuraiana	Rw2G042860 Rw7G032170 Rw7G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	218
AccB1I	GGYRCC	1 cut(s)	328
AciI	CCGC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	199
AcvI	CACGTG	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	329
AdeI	CACNNNGTG	1 cut(s)	258
AfiI	CCNNNNNNNGG	1 cut(s)	298
AflIII	ACRYGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	8, 400
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw21I	GWGCWC	1 cut(s)	51
AlwI	GGATC	1 cut(s)	199
Ama87I	CYCGRG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	310
BanI	GGYRCC	1 cut(s)	328
BbrPI	CACGTG	1 cut(s)	386
Bbv12I	GWGCWC	1 cut(s)	51
BceAI	ACGGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BciT130I	CCWGG	1 cut(s)	173
BfoI	RGCGCY	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	310
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	330, 408
BmrFI	CCNGG	1 cut(s)	173
BmrI	ACTGGG	1 cut(s)	131
BmuI	ACTGGG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	132
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	126
BshFI	GGCC	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	51
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	298
BsnI	GGCC	1 cut(s)	319
BsoBI	CYCGRG	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	1 cut(s)	204
Bsp19I	CCATGG	1 cut(s)	320
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	319
BspCNI	CTCAG	1 cut(s)	356
BspLI	GGNNCC	2 cut(s)	330, 408
BspPI	GGATC	1 cut(s)	199
BspT107I	GGYRCC	1 cut(s)	328
BsrFI	RCCGGY	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	2 cut(s)	85, 411
BstACI	GRCGYC	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	2 cut(s)	289, 317
BstDEI	CTNAG	2 cut(s)	269, 343
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	331
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	1 cut(s)	184
BstSCI	CCNGG	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	97
Cac8I	GCNNGC	2 cut(s)	289, 317
CfoI	GCGC	1 cut(s)	331
Cfr10I	RCCGGY	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	310
CviAII	CATG	3 cut(s)	181, 232, 321
CviJI	RGCY	4 cut(s)	61, 287, 319, 403
CviKI_1	RGCY	4 cut(s)	61, 287, 319, 403
DdeI	CTNAG	2 cut(s)	269, 343
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
DraI	TTTAAA	1 cut(s)	145
DraIII	CACNNNGTG	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	310
Eco72I	CACGTG	1 cut(s)	386
Eco88I	CYCGRG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	320
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	3 cut(s)	184, 235, 324
FaiI	YATR	4 cut(s)	182, 218, 233, 322
FatI	CATG	3 cut(s)	180, 231, 320
FokI	GGATG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	1 cut(s)	319
HapII	CCGG	1 cut(s)	133
HhaI	GCGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	3 cut(s)	184, 235, 324
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	133
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	170, 218
HpyCH4III	ACNGT	2 cut(s)	85, 411
HpyCH4IV	ACGT	2 cut(s)	223, 385
HpyF3I	CTNAG	2 cut(s)	269, 343
HpySE526I	ACGT	2 cut(s)	223, 385
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	3 cut(s)	184, 235, 324
HspAI	GCGC	1 cut(s)	329
KasI	GGCGCC	1 cut(s)	328
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	6 cut(s)	107, 146, 158, 185, 301, 389
MaeII	ACGT	2 cut(s)	223, 385
MaeIII	GTNAC	2 cut(s)	128, 371
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	2 cut(s)	64, 122
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	1 cut(s)	276
Mly113I	GGCGCC	1 cut(s)	329
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	72, 82, 350
MseI	TTAA	3 cut(s)	15, 144, 279
MslI	CAYNNNNRTG	1 cut(s)	185
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
NarI	GGCGCC	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	184, 235, 324
NlaIV	GGNNCC	2 cut(s)	330, 408
NspI	RCATGY	1 cut(s)	184
PluTI	GGCGCC	1 cut(s)	332
PmaCI	CACGTG	1 cut(s)	386
PmlI	CACGTG	1 cut(s)	386
Ppu21I	YACGTR	1 cut(s)	386
PsiI	TTATAA	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	171
PspCI	CACGTG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	330, 408
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	15, 144, 279
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	51
SetI	ASST	7 cut(s)	13, 174, 226, 312, 363, 388, 405
SfoI	GGCGCC	1 cut(s)	330
SinI	GGWCC	1 cut(s)	310
SmiMI	CAYNNNNRTG	1 cut(s)	185
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	1 cut(s)	313
SspDI	GGCGCC	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	2 cut(s)	85, 411
TaiI	ACGT	2 cut(s)	226, 388
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	3 cut(s)	15, 144, 279
Tru9I	TTAA	3 cut(s)	15, 144, 279
TspDTI	ATGAA	2 cut(s)	64, 248
VpaK11BI	GGWCC	1 cut(s)	310
XceI	RCATGY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.