Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004082

Physical Location & Seq

Genomic Coordinates Reverse (-)

20007287 .. 20010110

Gene Structure 2824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCCGTCAAATCCTTTATCCTTGCATGTTCAGTGTGTTAAAAAGGGGGTAATGGTTAGGCAGACTAGCCGAGGGCAGCCACCGGAGCCTCTTGATTTCTTTATCTGGACTGTTGAGGATGTTGGTCTGTGGTTGGAAGAGATAAATCTGGGCAGTTACCGGCAAACATTTAAAGAAAATGGTGTCAATGGAGAGTACCTGGAAGGCATGTCCATGTTCACTACTGAGCAGATTCTTCGTTTTATAAGAAAATACCACATGAAATGGGGGGACTTTATCACGCTCTGTAAGGAACTAAGGCGAATTAAAGTCGCTTGCCTGAAAGGAGAGCAAAAAGTTCGCAGGCCATGGTGGGCTCCGTCTTGCCTCTCAGTAGTATTTGTGAAGGTGGCAGAGCAAAACAGACAATCACGCGTTGTTTCCTTGAAGCTGGAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

147

Amino Acids

17.07

Weight (kDa)

9.44

Isoelectric Point (pI)

53.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	35 - 72	8.1e-07	SAM domain (Sterile alpha motif)
SAM_2	PF07647	36 - 72	1.3e-07	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760
fragaria_vesca	FvH4_5g30980 FvH4_6g40920
malus_domestica	MD09G1123200.v1.1 MD17G1113700.v1.1
prunus_persica	Prupe.3G200700_v2.0.a1
pyrus_communis	pycom17g10540
rosa_chinensis	RchiOBHm_Chr2g0156501 RchiOBHm_Chr7g0226381
rosa_laevigata	RLG00000001744 RLG00000020918
rosa_multiflora	Rmu_sc0003542.1_g000006 Rmu_sc0005392.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232890
rosa_rugosa	Rorug02G0453800 Rorug02G0453900 Rorug02G0453900 Rorug07G0236800 Rorug07G0236900
rosa_samantha	Rh2BG532200 Rh7AG383800 Rh7CG403400 Rh7DG382200
rosa_wichuraiana	Rw2G042860 Rw7G032170 Rw7G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AccII	CGCG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	1 cut(s)	430
AluI	AGCT	1 cut(s)	430
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 320, 354
BciT130I	CCWGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	200
BmiI	GGNNCC	3 cut(s)	87, 357, 435
BmrFI	CCNGG	1 cut(s)	200
BsaJI	CCNNGG	2 cut(s)	70, 347
BsaWI	WCCGGW	1 cut(s)	82
Bse118I	RCCGGY	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	70, 347
BseGI	GGATG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	216, 384
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	2 cut(s)	83, 160
BslFI	GGGAC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp19I	CCATGG	1 cut(s)	347
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	217, 383
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	3 cut(s)	87, 357, 435
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	2 cut(s)	70, 347
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	112
Bst6I	CTCTTC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	316, 344
BstDEI	CTNAG	3 cut(s)	225, 296, 370
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	2 cut(s)	29, 211
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	414
BstV1I	GCAGC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	124
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	316, 344
Cfr10I	RCCGGY	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	5 cut(s)	26, 208, 214, 259, 348
CviJI	RGCY	6 cut(s)	69, 79, 88, 346, 356, 430
CviKI_1	RGCY	6 cut(s)	69, 79, 88, 346, 356, 430
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	225, 296, 370
DraI	TTTAAA	1 cut(s)	172
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	347
Eco24I	GRGCYC	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	347
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	5 cut(s)	29, 211, 217, 262, 351
FaiI	YATR	7 cut(s)	27, 209, 215, 245, 260, 349, 439
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	5 cut(s)	25, 207, 213, 258, 347
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	2 cut(s)	83, 160
Hin1II	CATG	5 cut(s)	29, 211, 217, 262, 351
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	2 cut(s)	83, 160
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188III	TCNNGA	2 cut(s)	92, 106
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	2 cut(s)	197, 379
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	3 cut(s)	225, 296, 370
Hsp92II	CATG	5 cut(s)	29, 211, 217, 262, 351
LmnI	GCTCC	2 cut(s)	85, 361
LpnPI	CCDG	9 cut(s)	91, 96, 134, 173, 185, 212, 328, 332, 416
Lsp1109I	GCAGC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	149, 227
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	303
MluI	ACGCGT	1 cut(s)	412
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	65, 99, 109, 377
MseI	TTAA	3 cut(s)	39, 171, 306
MslI	CAYNNNNRTG	1 cut(s)	212
MspI	CCGG	2 cut(s)	83, 160
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	85
NcoI	CCATGG	1 cut(s)	347
NlaIII	CATG	5 cut(s)	29, 211, 217, 262, 351
NlaIV	GGNNCC	3 cut(s)	87, 357, 435
NmeAIII	GCCGAG	1 cut(s)	95
NspI	RCATGY	2 cut(s)	29, 211
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	78
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	3 cut(s)	87, 357, 435
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	39, 171, 306
SatI	GCNGC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	3 cut(s)	201, 390, 432
SmiMI	CAYNNNNRTG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	112
TasI	AATT	1 cut(s)	303
TfiI	GAWTC	1 cut(s)	232
Tru1I	TTAA	3 cut(s)	39, 171, 306
Tru9I	TTAA	3 cut(s)	39, 171, 306
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	1 cut(s)	38
XceI	RCATGY	2 cut(s)	29, 211
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.