Prupe.3G200700_v2.0.a1

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0004082
Physical Location & Seq
Reverse (-)
20944039 .. 20946994
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G200700.1

Sequence Viewer

Length: 390 bp
ATGATGAGGGAGATGAGCAAAGAACACCCACCAGAGCCTCTTGATTTCTTCATTTGGACTGTTGAGGATGTCGGTTTGTGGTTGGAAGAGATAAACCTCGGCAGTTACCGGCAAACTTTTAAGGAAAATGGAGTCAATGGAGAATACCTGGAAGGCATGTCAATGTTTACTACTGAGCAGATTCTTCGGTTTATAAGACGGTGCCACATGAAATGGGGAGACTTTATCACGCTGTGTAAGGAACTAAGGCGAATTAAAGTGGCTTGCCTGAAAGGGGAGCAAAAGGTCCGCAGGCCATGGTGGGCTCCATCTTGCCTCTCAGTAGTATTTGTCAAGGTGGCAAAGCGTAACAGACAATCACGGGTTGTTTCCTTGAAGCTGGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

130

Amino Acids

15.37

Weight (kDa)

9.35

Isoelectric Point (pI)

63.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 147
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
Alw26I GTCTC 1 cut(s) 213
AoxI GGCC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 286
AvaII GGWCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 307
BccI CCATC 1 cut(s) 316
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 3 cut(s) 203, 306, 384
BmrFI CCNGG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 97, 296
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse118I RCCGGY 1 cut(s) 108
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 97, 296
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 2 cut(s) 165, 333
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 1 cut(s) 201
BsiSI CCGG 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 2 cut(s) 166, 332
BspLI GGNNCC 3 cut(s) 203, 306, 384
BspT107I GGYRCC 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 97, 296
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 61, 201
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 265, 293
BstDEI CTNAG 3 cut(s) 174, 245, 319
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 213
BstNI CCWGG 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 265, 293
Cfr10I RCCGGY 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 286
CviAII CATG 3 cut(s) 157, 208, 297
CviJI RGCY 5 cut(s) 37, 263, 295, 305, 379
CviKI_1 RGCY 5 cut(s) 37, 263, 295, 305, 379
DdeI CTNAG 3 cut(s) 174, 245, 319
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 160, 211, 300
FaiI YATR 5 cut(s) 158, 194, 209, 298, 388
FatI CATG 3 cut(s) 156, 207, 296
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 307
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 109
Hin1II CATG 3 cut(s) 160, 211, 300
HinfI GANTC 2 cut(s) 132, 181
HpaII CCGG 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 61, 201
HpyF3I CTNAG 3 cut(s) 174, 245, 319
Hsp92II CATG 3 cut(s) 160, 211, 300
LmnI GCTCC 2 cut(s) 277, 310
LpnPI CCDG 7 cut(s) 45, 122, 134, 161, 277, 281, 365
MaeIII GTNAC 2 cut(s) 104, 347
MboII GAAGA 3 cut(s) 40, 98, 176
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 252
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 4 cut(s) 48, 58, 107, 326
MseI TTAA 2 cut(s) 120, 255
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 109
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
NcoI CCATGG 1 cut(s) 296
NlaIII CATG 3 cut(s) 160, 211, 300
NlaIV GGNNCC 3 cut(s) 203, 306, 384
NmeAIII GCCGAG 1 cut(s) 78
NspI RCATGY 1 cut(s) 160
PfeI GAWTC 1 cut(s) 181
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
PsiI TTATAA 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 3 cut(s) 203, 306, 384
PspPI GGNCC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 120, 255
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 307
SetI ASST 5 cut(s) 99, 150, 288, 339, 381
SinI GGWCC 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 252
SsiI CCGC 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 61, 201
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 2 cut(s) 120, 255
Tru9I TTAA 2 cut(s) 120, 255
TspDTI ATGAA 2 cut(s) 40, 224
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.