Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004082

Physical Location & Seq

Genomic Coordinates Forward (+)

8120762 .. 8122754

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g10540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATTGAAGGTGTTAAAAAGGGAGTAATGATTAGGGAGATGAGCAAAGAGCAGCCACCTGAGCCTCTTGATTTCTTCATTTGGACTGTTGAGGATGTTGGTTTGTGGTTGGAAGAAATAAAACTGGGCAGTTACCGGCAAACTTTTAAGGAAAATGGTGTCAATGGAGAATACCTGGAAGGCATGTCAATGTTTACTACTGAGCAGATTCTTCGGTTTATAAGACGTTGCCACATGAAATGGGGAGACTTTATCACGCTGTGTAAGGAACTAAGGCGAATTAAAGTGGCTTGCCTAAAAGGGGAGCAAAAGGTCCGCAGACCATGGTGGGCTCCGTCTTGCCTCTCAGTAGTATTCGTCAAGGTGGCCAAGCGTAACAGACAATCACGAGTTGTTTCCTTGAAGCTGGAACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1 SAM_2

Protein Analysis

139

Amino Acids

16.3

Weight (kDa)

9.54

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760 AT3G07760
fragaria_vesca	FvH4_5g30980 FvH4_6g40920
malus_domestica	MD09G1123200.v1.1 MD17G1113700.v1.1
prunus_persica	Prupe.3G200700_v2.0.a1
pyrus_communis	pycom17g10540
rosa_chinensis	RchiOBHm_Chr2g0156501 RchiOBHm_Chr7g0226381
rosa_laevigata	RLG00000001744 RLG00000020918
rosa_multiflora	Rmu_sc0003542.1_g000006 Rmu_sc0005392.1_g000008
rosa_roxburghii	Rroxscaffold_3G00232890
rosa_rugosa	Rorug02G0453800 Rorug02G0453900 Rorug02G0453900 Rorug07G0236800 Rorug07G0236900
rosa_samantha	Rh2BG532200 Rh7AG383800 Rh7CG403400 Rh7DG382200
rosa_wichuraiana	Rw2G042860 Rw7G032170 Rw7G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AciI	CCGC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	366
AdeI	CACNNNGTG	1 cut(s)	261
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	8, 403
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	240
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	334
BauI	CACGAG	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	240
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	333, 411
BmrFI	CCNGG	1 cut(s)	176
BmrI	ACTGGG	1 cut(s)	134
BmuI	ACTGGG	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse118I	RCCGGY	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	3 cut(s)	51, 192, 360
BseNI	ACTGG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	64
BshFI	GGCC	1 cut(s)	368
BsiSI	CCGG	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	1 cut(s)	316
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	3 cut(s)	52, 193, 359
BspLI	GGNNCC	2 cut(s)	333, 411
BsrFI	RCCGGY	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	129
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	1 cut(s)	323
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	323
Bst2BI	CACGAG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	88, 414
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	4 cut(s)	60, 201, 272, 346
BstDSI	CCRYGG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	368
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	292
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	313
CviAII	CATG	3 cut(s)	184, 235, 324
CviJI	RGCY	6 cut(s)	55, 64, 290, 332, 368, 406
CviKI_1	RGCY	6 cut(s)	55, 64, 290, 332, 368, 406
DdeI	CTNAG	4 cut(s)	60, 201, 272, 346
DraIII	CACNNNGTG	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	323
Eco24I	GRGCYC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	323
EcoT38I	GRGCYC	1 cut(s)	334
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	3 cut(s)	187, 238, 327
FaiI	YATR	4 cut(s)	185, 221, 236, 325
FatI	CATG	3 cut(s)	183, 234, 323
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	1 cut(s)	136
Hin1II	CATG	3 cut(s)	187, 238, 327
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	68, 387
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	88, 414
HpyCH4IV	ACGT	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	4 cut(s)	60, 201, 272, 346
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	3 cut(s)	187, 238, 327
LmnI	GCTCC	2 cut(s)	304, 337
LpnPI	CCDG	6 cut(s)	72, 110, 149, 161, 188, 392
Lsp1109I	GCAGC	1 cut(s)	64
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	2 cut(s)	131, 374
MboII	GAAGA	3 cut(s)	67, 125, 203
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	368
MluCI	AATT	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	368
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	75, 85, 353
Mox20I	TGGCCA	1 cut(s)	368
MscI	TGGCCA	1 cut(s)	368
MseI	TTAA	3 cut(s)	15, 147, 282
MslI	CAYNNNNRTG	1 cut(s)	188
Msp20I	TGGCCA	1 cut(s)	368
MspI	CCGG	1 cut(s)	136
MspR9I	CCNGG	1 cut(s)	176
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	323
NlaIII	CATG	3 cut(s)	187, 238, 327
NlaIV	GGNNCC	2 cut(s)	333, 411
NspI	RCATGY	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	54
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	333, 411
PspPI	GGNCC	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	15, 147, 282
SatI	GCNGC	1 cut(s)	53
Sau96I	GGNCC	1 cut(s)	313
ScrFI	CCNGG	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	13, 61, 177, 229, 315, 366, 408
SinI	GGWCC	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	2 cut(s)	88, 414
TaiI	ACGT	1 cut(s)	229
TasI	AATT	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	3 cut(s)	15, 147, 282
Tru9I	TTAA	3 cut(s)	15, 147, 282
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	67, 251
TspGWI	ACGGA	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	313
XceI	RCATGY	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.