Rw2G042860

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0004082
Physical Location & Seq
Reverse (-)
69190122 .. 69192433
2312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042860.1

Sequence Viewer

Length: 390 bp
ATGGTTAGGGAGATGAGCAGAGAGCAGCCACCGGAGCCTCTTGATTTCTTTATTTGGACTGTTGAGGATGTTGGTTTATGGTTAGAAGAGATAAATCTGGGCAGTTACCGGCAAACTTTCAAGGAAAATGGTGTCAATGGAGAGTACCTAGAAGGCATGTCTATGTTCACTACTGAGCAGATTCTTCGCTTTATAAGACGATGCCACATGAAATGGGGAGATTTTATCACACTGTGTAAGGAGCTAAGGCGAATTAAAGTCGCTTGCCTGAAAGGAGAGCAAAAAGTCCGCAGGCCATGGTGGGCTCCGTCTTGCCTCTCAATAGTATTTGTCAAGGTGGCAAAGCGTAACAGACAATCACGCGTTGTTTCCTTGAAGCTGGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

129

Amino Acids

15.37

Weight (kDa)

9.38

Isoelectric Point (pI)

68.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 18 - 55 6.7e-07 SAM domain (Sterile alpha motif)
SAM_2 PF07647 19 - 55 9.6e-08 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AccII CGCG 1 cut(s) 363
AciI CCGC 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 2 cut(s) 121, 376
AluBI AGCT 2 cut(s) 244, 379
AluI AGCT 2 cut(s) 244, 379
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 307
BbvI GCAGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BfaI CTAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmiI GGNNCC 3 cut(s) 36, 306, 384
BmsI GCATC 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 295
BsiSI CCGG 2 cut(s) 32, 109
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 1 cut(s) 289
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 3 cut(s) 36, 306, 384
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
BssECI CCNNGG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 296
Bst4CI ACNGT 2 cut(s) 61, 234
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 2 cut(s) 265, 293
BstDEI CTNAG 2 cut(s) 174, 245
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 160
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 37
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 230
Cac8I GCNNGC 2 cut(s) 265, 293
Cfr10I RCCGGY 1 cut(s) 108
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 157, 208, 297
CviJI RGCY 6 cut(s) 28, 37, 244, 295, 305, 379
CviKI_1 RGCY 6 cut(s) 28, 37, 244, 295, 305, 379
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 174, 245
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 3 cut(s) 160, 211, 300
FaiI YATR 7 cut(s) 79, 158, 164, 194, 209, 298, 388
FatI CATG 3 cut(s) 156, 207, 296
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 295
HapII CCGG 2 cut(s) 32, 109
Hin1II CATG 3 cut(s) 160, 211, 300
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 32, 109
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 61, 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 174, 245
Hsp92II CATG 3 cut(s) 160, 211, 300
LmnI GCTCC 3 cut(s) 34, 241, 310
LpnPI CCDG 6 cut(s) 45, 83, 122, 277, 281, 365
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 2 cut(s) 104, 347
MboII GAAGA 2 cut(s) 98, 176
MhlI GDGCHC 1 cut(s) 307
MluCI AATT 1 cut(s) 252
MluI ACGCGT 1 cut(s) 361
MnlI CCTC 3 cut(s) 48, 58, 326
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 2 cut(s) 32, 109
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 296
NlaIII CATG 3 cut(s) 160, 211, 300
NlaIV GGNNCC 3 cut(s) 36, 306, 384
NspI RCATGY 1 cut(s) 160
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 27
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 36, 306, 384
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 26
SduI GDGCHC 1 cut(s) 307
SetI ASST 4 cut(s) 150, 246, 339, 381
SfaNI GCATC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 252
SsiI CCGC 1 cut(s) 289
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 296
TaaI ACNGT 2 cut(s) 61, 234
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 237
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.