Rorug07G0236900

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004082
Physical Location & Seq
Reverse (-)
21737232 .. 21738453
1222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0236900.1

Sequence Viewer

Length: 993 bp
ATGTACCTTAAGTCATCCATTTTGTTAATGCTTCTCTTGCTTTCCTTGGCTACAATCTTGCTCTCTGCGCAAGGTAAAGAAGTCCCCCGTGTCGGATTCTATTCGCGTTCATGTCCTAGAGCAGAGTCCATTGTCAAACAAACAGTTCAATCTCACTTCAAATCAGATCCTACCATTGCTCCTGGCTTATTAAGGATGCACTTCCATGACTGCTTTGTTCAAGGCTGCGATGGTTCTGTTCTTCTCGACGGTCCAAGCACTGAAAAAACTGCTGGCCCTAACCGCGGACTAAGAGGTTGGGAAGTTATCGACGATGCAAAGACAAAGCTTGAAGCCGCATGCCCTGGGGTTGTTTCCTGTGCAGACATTCTCGCCCTAGCTGCTCGCGATTCTGTTGTTTTGACCAAGGGAATCGATTGGAAGGTGCCTACTGGAAGATTAGACGGACGTATTTCATTGGCATCGGAGACTTCAGCTTTGCCTGGCTTTAGAGACTCCATGAAAGTACAAAAGGACAAGTTCAAAAATTTGGGTCTCAACACTCAAGATCTTGTCACTCTTGTTGGTGGACACACCATAGGCACTACCGCTTGCCAGTTATTCAGCTACAGACTCTATAACTTCAACACAACTGGAAATGGTGATGCTACAGACCCTACCATCAGTCCTTCATTCCTTTCTCAATTAAAATCACTTTGCCCAGAAAATGGCGATGGAGCCAAGCGTGTTGGTTTAGACACAGGCAGCGAAAACCGATTTGATGCGACATTCTTTACAAACTTGAAGAATGGGCGTGGTGTACTCGAGTCCGATCAAATGTTATGGACTGATGCCTCCACAAGAAGCTTTGTCCAACGTTTCTTGGGAGTCAGAGGCTTGCGAGCATTGAATTTTAATGCAGAGTTTGGAAGGTCTATGGTGAAGATGAGTAAAATTGGTTTGAAACCTGCGGCAAAGGGTGAAATTCGCCGCATTTGTCCTGCAGTTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

330

Amino Acids

35.77

Weight (kDa)

9.27

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 287 1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 69
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 707
AccII CGCG 3 cut(s) 106, 285, 387
AciI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
AclI AACGTT 1 cut(s) 856
AclWI GGATC 1 cut(s) 161
AcsI RAATTY 3 cut(s) 526, 889, 963
AcuI CTGAAG 1 cut(s) 456
AfaI GTAC 3 cut(s) 5, 507, 801
AfiI CCNNNNNNNGG 3 cut(s) 92, 284, 707
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 9 cut(s) 149, 160, 221, 332, 523, 625, 784, 889, 943
AjnI CCWGG 3 cut(s) 181, 343, 481
AluBI AGCT 5 cut(s) 328, 380, 476, 606, 846
AluI AGCT 5 cut(s) 328, 380, 476, 606, 846
Alw26I GTCTC 3 cut(s) 461, 486, 539
AlwI GGATC 1 cut(s) 161
Ama87I CYCGRG 1 cut(s) 803
AoxI GGCC 1 cut(s) 274
ApeKI GCWGC 3 cut(s) 225, 380, 744
ApoI RAATTY 3 cut(s) 526, 889, 963
ArsI GACNNNNNNTTYG 2 cut(s) 460, 492
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 251, 275
AsuHPI GGTGA 3 cut(s) 653, 931, 971
AvaI CYCGRG 1 cut(s) 803
AvaII GGWCC 1 cut(s) 251
BanI GGYRCC 1 cut(s) 424
BbvI GCAGC 3 cut(s) 212, 367, 756
BccI CCATC 3 cut(s) 224, 668, 707
BciT130I CCWGG 3 cut(s) 183, 345, 483
BcoDI GTCTC 3 cut(s) 461, 486, 539
BfaI CTAG 2 cut(s) 117, 377
BfmI CTRYAG 3 cut(s) 607, 648, 981
BfrI CTTAAG 1 cut(s) 8
BfuAI ACCTGC 1 cut(s) 955
BglII AGATCT 1 cut(s) 547
BisI GCNGC 6 cut(s) 226, 336, 381, 745, 951, 970
BlsI GCNGC 6 cut(s) 227, 337, 382, 746, 952, 971
Bme1390I CCNGG 3 cut(s) 183, 345, 483
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 803
BmgT120I GGNCC 2 cut(s) 251, 275
BmiI GGNNCC 2 cut(s) 426, 718
BmrFI CCNGG 3 cut(s) 183, 345, 483
BmsI GCATC 6 cut(s) 186, 304, 470, 634, 751, 820
BpuEI CTTGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 414
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 284, 707
Bse1I ACTGG 3 cut(s) 436, 595, 637
Bse3DI GCAATG 1 cut(s) 174
BseBI CCWGG 3 cut(s) 183, 345, 483
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BseGI GGATG 2 cut(s) 14, 201
BseLI CCNNNNNNNGG 3 cut(s) 92, 284, 707
BseMI GCAATG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 436, 595, 637
BseXI GCAGC 3 cut(s) 212, 367, 756
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 3 cut(s) 106, 285, 387
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 803
BslFI GGGAC 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 92, 284, 707
BsmAI GTCTC 3 cut(s) 461, 486, 539
BsmFI GGGAC 1 cut(s) 68
BsnI GGCC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 803
Bsp143I GATC 3 cut(s) 166, 547, 811
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
BspANI GGCC 1 cut(s) 276
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 3 cut(s) 106, 285, 387
BspLI GGNNCC 2 cut(s) 426, 718
BspMAI CTGCAG 1 cut(s) 985
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 424
BspTI CTTAAG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 174
BsrI ACTGG 3 cut(s) 436, 595, 637
BssECI CCNNGG 5 cut(s) 45, 283, 343, 344, 405
BssMI GATC 3 cut(s) 166, 547, 811
BssT1I CCWWGG 2 cut(s) 45, 405
Bst2UI CCWGG 3 cut(s) 183, 345, 483
Bst4CI ACNGT 2 cut(s) 145, 251
BstAFI CTTAAG 1 cut(s) 8
BstC8I GCNNGC 6 cut(s) 274, 340, 385, 592, 878, 882
BstDEI CTNAG 1 cut(s) 290
BstDSI CCRYGG 1 cut(s) 283
BstF5I GGATG 2 cut(s) 14, 201
BstFNI CGCG 3 cut(s) 106, 285, 387
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 3 cut(s) 169, 550, 814
BstMAI GTCTC 3 cut(s) 461, 486, 539
BstMBI GATC 3 cut(s) 166, 547, 811
BstMWI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
BstNI CCWGG 3 cut(s) 183, 345, 483
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 181, 343, 481
BstSFI CTRYAG 3 cut(s) 607, 648, 981
BstUI CGCG 3 cut(s) 106, 285, 387
BstV1I GCAGC 3 cut(s) 212, 367, 756
BstX2I RGATCY 2 cut(s) 166, 547
BstYI RGATCY 2 cut(s) 166, 547
Bsu15I ATCGAT 1 cut(s) 414
BsuRI GGCC 1 cut(s) 276
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 283
BtgZI GCGATG 2 cut(s) 243, 726
BtsCI GGATG 2 cut(s) 14, 201
BtsIMutI CAGTG 1 cut(s) 258
BtuMI TCGCGA 1 cut(s) 387
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 6 cut(s) 274, 340, 385, 592, 878, 882
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 251, 275
Cfr42I CCGCGG 1 cut(s) 286
ClaI ATCGAT 1 cut(s) 414
Csp6I GTAC 3 cut(s) 4, 506, 800
CviAII CATG 4 cut(s) 111, 206, 339, 499
CviQI GTAC 3 cut(s) 4, 506, 800
DdeI CTNAG 1 cut(s) 290
DpnI GATC 3 cut(s) 168, 549, 813
DpnII GATC 3 cut(s) 166, 547, 811
Eco130I CCWWGG 2 cut(s) 45, 405
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 803
EcoRII CCWGG 3 cut(s) 181, 343, 481
EcoT14I CCWWGG 2 cut(s) 45, 405
ErhI CCWWGG 2 cut(s) 45, 405
FaeI CATG 4 cut(s) 114, 209, 342, 502
FaiI YATR 8 cut(s) 112, 207, 340, 500, 578, 618, 823, 917
FaqI GGGAC 1 cut(s) 68
FatI CATG 4 cut(s) 110, 205, 338, 498
Fnu4HI GCNGC 6 cut(s) 226, 336, 381, 745, 951, 970
FokI GGATG 1 cut(s) 208
Fsp4HI GCNGC 6 cut(s) 226, 336, 381, 745, 951, 970
FspBI CTAG 2 cut(s) 117, 377
FspI TGCGCA 1 cut(s) 69
GlaI GCGC 1 cut(s) 69
GluI GCNGC 6 cut(s) 226, 336, 381, 745, 951, 970
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 70
Hin1II CATG 4 cut(s) 114, 209, 342, 502
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 1 cut(s) 988
HindII GTYRAC 1 cut(s) 988
HindIII AAGCTT 2 cut(s) 326, 844
HinfI GANTC 8 cut(s) 96, 125, 389, 411, 494, 612, 806, 867
HpaI GTTAAC 1 cut(s) 988
HphI GGTGA 3 cut(s) 653, 931, 971
Hpy166II GTNNAC 3 cut(s) 569, 800, 988
Hpy188I TCNGA 5 cut(s) 95, 166, 466, 811, 872
Hpy188III TCNNGA 3 cut(s) 245, 386, 545
Hpy8I GTNNAC 3 cut(s) 569, 800, 988
Hpy99I CGWCG 2 cut(s) 251, 314
HpyAV CCTTC 3 cut(s) 415, 678, 903
HpyCH4III ACNGT 2 cut(s) 145, 251
HpyCH4IV ACGT 2 cut(s) 448, 856
HpyCH4V TGCA 5 cut(s) 199, 317, 362, 899, 983
HpyF10VI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
HpyF3I CTNAG 1 cut(s) 290
HpySE526I ACGT 2 cut(s) 448, 856
Hsp92II CATG 4 cut(s) 114, 209, 342, 502
HspAI GCGC 1 cut(s) 68
KspAI GTTAAC 1 cut(s) 988
KspI CCGCGG 1 cut(s) 286
Kzo9I GATC 3 cut(s) 166, 547, 811
LmnI GCTCC 2 cut(s) 184, 716
Lsp1109I GCAGC 3 cut(s) 212, 367, 756
LweI GCATC 6 cut(s) 186, 304, 470, 634, 751, 820
MaeI CTAG 2 cut(s) 117, 377
MaeII ACGT 2 cut(s) 448, 856
MaeIII GTNAC 1 cut(s) 553
MalI GATC 3 cut(s) 168, 549, 813
MboI GATC 3 cut(s) 166, 547, 811
MboII GAAGA 4 cut(s) 233, 447, 796, 934
MflI RGATCY 2 cut(s) 166, 547
MluCI AATT 5 cut(s) 526, 683, 889, 933, 963
MlyI GAGTC 5 cut(s) 134, 488, 606, 815, 876
MmeI TCCRAC 2 cut(s) 73, 877
MnlI CCTC 3 cut(s) 287, 844, 866
MseI TTAA 6 cut(s) 9, 26, 191, 686, 894, 987
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 285
MspCI CTTAAG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 183, 345, 483
MvaI CCWGG 3 cut(s) 183, 345, 483
MvnI CGCG 3 cut(s) 106, 285, 387
MwoI GCNNNNNNNGC 4 cut(s) 37, 67, 282, 380
NdeII GATC 3 cut(s) 166, 547, 811
NlaIII CATG 4 cut(s) 114, 209, 342, 502
NlaIV GGNNCC 2 cut(s) 426, 718
NmuCI GTSAC 1 cut(s) 553
NruI TCGCGA 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 69
NspI RCATGY 1 cut(s) 342
PaeI GCATGC 1 cut(s) 342
PaeR7I CTCGAG 1 cut(s) 803
PasI CCCWGGG 1 cut(s) 344
PfeI GAWTC 3 cut(s) 96, 389, 411
PflMI CCANNNNNTGG 1 cut(s) 707
PkrI GCNGC 6 cut(s) 227, 337, 382, 746, 952, 971
PleI GAGTC 5 cut(s) 133, 488, 606, 814, 875
PpsI GAGTC 5 cut(s) 133, 488, 606, 814, 875
Psp1406I AACGTT 1 cut(s) 856
Psp6I CCWGG 3 cut(s) 181, 343, 481
PspGI CCWGG 3 cut(s) 181, 343, 481
PspN4I GGNNCC 2 cut(s) 426, 718
PspPI GGNCC 2 cut(s) 251, 275
PspXI VCTCGAGB 1 cut(s) 803
PstI CTGCAG 1 cut(s) 985
PsuI RGATCY 2 cut(s) 166, 547
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 3 cut(s) 5, 507, 801
RsaNI GTAC 3 cut(s) 4, 506, 800
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 286
SaqAI TTAA 6 cut(s) 9, 26, 191, 686, 894, 987
SatI GCNGC 6 cut(s) 226, 336, 381, 745, 951, 970
Sau3AI GATC 3 cut(s) 166, 547, 811
Sau96I GGNCC 2 cut(s) 251, 275
SchI GAGTC 5 cut(s) 134, 488, 606, 815, 876
ScrFI CCNGG 3 cut(s) 183, 345, 483
SfaNI GCATC 6 cut(s) 186, 304, 470, 634, 751, 820
SfcI CTRYAG 3 cut(s) 607, 648, 981
Sfr274I CTCGAG 1 cut(s) 803
Sfr303I CCGCGG 1 cut(s) 286
SgrBI CCGCGG 1 cut(s) 286
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 8, 543, 803
SmoI CTYRAG 3 cut(s) 8, 543, 803
SphI GCATGC 1 cut(s) 342
Sse9I AATT 5 cut(s) 526, 683, 889, 933, 963
SsiI CCGC 6 cut(s) 283, 285, 336, 588, 950, 970
SspMI CTAG 2 cut(s) 117, 377
StyD4I CCNGG 3 cut(s) 181, 343, 481
StyI CCWWGG 2 cut(s) 45, 405
TaaI ACNGT 2 cut(s) 145, 251
TaiI ACGT 2 cut(s) 451, 859
TaqI TCGA 4 cut(s) 246, 309, 414, 804
TasI AATT 5 cut(s) 526, 683, 889, 933, 963
TatI WGTACW 2 cut(s) 505, 799
TauI GCSGC 3 cut(s) 338, 953, 972
TfiI GAWTC 3 cut(s) 96, 389, 411
Tru1I TTAA 6 cut(s) 9, 26, 191, 686, 894, 987
Tru9I TTAA 6 cut(s) 9, 26, 191, 686, 894, 987
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 3 cut(s) 225, 380, 744
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 99, 444, 515, 660
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 707
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 3 cut(s) 526, 889, 963
XceI RCATGY 1 cut(s) 342
XhoI CTCGAG 1 cut(s) 803
XspI CTAG 2 cut(s) 117, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.