Rorug07G0236800

SAM domain (Sterile alpha motif)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004082
Physical Location & Seq
Reverse (-)
21733749 .. 21734298
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0236800.1

Sequence Viewer

Length: 435 bp
ATGAGGAAACTGGATGTCAAGCTCCCCCTCAAGTGCGGCTACTATGAACATGTGTTCCAAGTGCACAAAGACTCGATGAAACAAGAGCAGACTAATCTTGCTGCATCATCCATTGGAAATACTGTCAATGGAAAATCAAAGGAATATATTGTTTCTGCTAATTATAATGTCTCTGATCCGCAACCATCCTCCTTTACTTTCGGGACATGCCAGAATAACGAGGAAGCGAAGCAGCCGGAGGGCCCGAAACGGTGCACTAGCTGCAACAAGCGGGTTGGTTTGACAGGGTTTAACTGTCGTTGTGGTCACCTTTTTTGTGCAGTACATCGTTATTCGGAGGAACATGATTGCTCTTATGATCATCGTACTGCTGGTCGTGGGGCCATTTCTAAAGCCAATCCTATTGTCAAAGCTGAGAAGCTTGATAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_1 SAM_2

Protein Analysis

144

Amino Acids

16.09

Weight (kDa)

8.9

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-AN1 PF01428 85 - 121 1.4e-08 AN1-like Zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AciI CCGC 3 cut(s) 36, 179, 271
AclWI GGATC 1 cut(s) 170
AfaI GTAC 2 cut(s) 324, 367
AflIII ACRYGT 1 cut(s) 49
AloI GAACNNNNNNTCC 2 cut(s) 39, 71
AluBI AGCT 4 cut(s) 22, 261, 413, 421
AluI AGCT 4 cut(s) 22, 261, 413, 421
Alw21I GWGCWC 2 cut(s) 66, 257
Alw26I GTCTC 1 cut(s) 175
Alw44I GTGCAC 2 cut(s) 62, 253
AlwI GGATC 1 cut(s) 170
AoxI GGCC 2 cut(s) 241, 381
ApaI GGGCCC 1 cut(s) 245
ApaLI GTGCAC 2 cut(s) 62, 253
ApeKI GCWGC 3 cut(s) 101, 232, 261
AspS9I GGNCC 3 cut(s) 241, 242, 381
AsuHPI GGTGA 1 cut(s) 299
BaeGI GKGCMC 3 cut(s) 66, 245, 257
BanII GRGCYC 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 66, 257
BbvI GCAGC 3 cut(s) 88, 244, 248
BccI CCATC 1 cut(s) 193
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 258
BisI GCNGC 4 cut(s) 37, 102, 233, 262
BlsI GCNGC 4 cut(s) 38, 103, 234, 263
BmgT120I GGNCC 3 cut(s) 241, 242, 381
BmiI GGNNCC 2 cut(s) 243, 382
BmsI GCATC 1 cut(s) 113
BpuEI CTTGAG 1 cut(s) 14
Bse1I ACTGG 1 cut(s) 15
BseGI GGATG 3 cut(s) 19, 107, 185
BseMII CTCAG 1 cut(s) 405
BseNI ACTGG 1 cut(s) 15
BseSI GKGCMC 3 cut(s) 66, 245, 257
BseXI GCAGC 3 cut(s) 88, 244, 248
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 2 cut(s) 243, 383
BsiHKAI GWGCWC 2 cut(s) 66, 257
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 2 cut(s) 243, 383
Bsp120I GGGCCC 1 cut(s) 241
Bsp1286I GDGCHC 3 cut(s) 66, 245, 257
Bsp143I GATC 2 cut(s) 175, 358
BspACI CCGC 3 cut(s) 36, 179, 271
BspANI GGCC 2 cut(s) 243, 383
BspCNI CTCAG 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 243, 382
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 15
BssMI GATC 2 cut(s) 175, 358
Bst4CI ACNGT 3 cut(s) 124, 252, 296
BstAPI GCANNNNNTGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 414
BstEII GGTNACC 1 cut(s) 305
BstF5I GGATG 3 cut(s) 19, 107, 185
BstKTI GATC 2 cut(s) 178, 361
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 175, 358
BstMWI GCNNNNNNNGC 1 cut(s) 261
BstNSI RCATGY 2 cut(s) 53, 210
BstPI GGTNACC 1 cut(s) 305
BstSLI GKGCMC 3 cut(s) 66, 245, 257
BstV1I GCAGC 3 cut(s) 88, 244, 248
BsuRI GGCC 2 cut(s) 243, 383
BtsCI GGATG 3 cut(s) 19, 107, 185
Cfr13I GGNCC 3 cut(s) 241, 242, 381
Csp6I GTAC 2 cut(s) 323, 366
CviAII CATG 3 cut(s) 50, 207, 344
CviJI RGCY 9 cut(s) 22, 39, 235, 243, 261, 383, 395, 413, 421
CviKI_1 RGCY 9 cut(s) 22, 39, 235, 243, 261, 383, 395, 413, 421
CviQI GTAC 2 cut(s) 323, 366
DdeI CTNAG 1 cut(s) 414
DpnI GATC 2 cut(s) 177, 360
DpnII GATC 2 cut(s) 175, 358
Eco24I GRGCYC 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 305
EcoO109I RGGNCCY 1 cut(s) 241
EcoO65I GGTNACC 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 245
FaeI CATG 3 cut(s) 53, 210, 347
FaiI YATR 7 cut(s) 45, 51, 147, 165, 208, 345, 357
FaqI GGGAC 1 cut(s) 217
FatI CATG 3 cut(s) 49, 206, 343
FauI CCCGC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 37, 102, 233, 262
FokI GGATG 3 cut(s) 26, 94, 172
FriOI GRGCYC 1 cut(s) 245
Fsp4HI GCNGC 4 cut(s) 37, 102, 233, 262
FspBI CTAG 1 cut(s) 258
GluI GCNGC 4 cut(s) 37, 102, 233, 262
HaeIII GGCC 2 cut(s) 243, 383
HapII CCGG 1 cut(s) 236
Hin1II CATG 3 cut(s) 53, 210, 347
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 2 cut(s) 64, 255
Hpy188I TCNGA 2 cut(s) 175, 337
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 64, 255
HpyCH4III ACNGT 3 cut(s) 124, 252, 296
HpyCH4V TGCA 5 cut(s) 64, 104, 255, 264, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 261
HpyF3I CTNAG 1 cut(s) 414
Hsp92II CATG 3 cut(s) 53, 210, 347
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 175, 358
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 4 cut(s) 224, 249, 270, 357
Lsp1109I GCAGC 3 cut(s) 88, 244, 248
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 305
MalI GATC 2 cut(s) 177, 360
MboI GATC 2 cut(s) 175, 358
MhlI GDGCHC 3 cut(s) 66, 245, 257
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 5 cut(s) 38, 199, 214, 232, 331
MseI TTAA 1 cut(s) 291
MspI CCGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 261
NdeII GATC 2 cut(s) 175, 358
NlaIII CATG 3 cut(s) 53, 210, 347
NlaIV GGNNCC 2 cut(s) 243, 382
NmuCI GTSAC 1 cut(s) 305
NspI RCATGY 2 cut(s) 53, 210
PciI ACATGT 1 cut(s) 49
PkrI GCNGC 4 cut(s) 38, 103, 234, 263
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 305
PspN4I GGNNCC 2 cut(s) 243, 382
PspOMI GGGCCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 241, 242, 381
RsaI GTAC 2 cut(s) 324, 367
RsaNI GTAC 2 cut(s) 323, 366
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 37, 102, 233, 262
Sau3AI GATC 2 cut(s) 175, 358
Sau96I GGNCC 3 cut(s) 241, 242, 381
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 3 cut(s) 66, 245, 257
SetI ASST 5 cut(s) 24, 263, 312, 415, 423
SfaNI GCATC 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 160
SsiI CCGC 3 cut(s) 36, 179, 271
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 3 cut(s) 124, 252, 296
TaqI TCGA 1 cut(s) 74
TasI AATT 1 cut(s) 160
TatI WGTACW 1 cut(s) 322
TauI GCSGC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 305
TseI GCWGC 3 cut(s) 101, 232, 261
Tsp45I GTSAC 1 cut(s) 305
TspDTI ATGAA 2 cut(s) 60, 92
VneI GTGCAC 2 cut(s) 62, 253
XceI RCATGY 2 cut(s) 53, 210
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.