Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007180

Physical Location & Seq

Genomic Coordinates Forward (+)

2555970 .. 2557505

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGACGTTAGGCTTTAACACAAGGCGAATCCAGACACCATCACTTCCGAGAATCCCTAAACCCTCTTCTTTTACTAAACCCATCAAAACCCATCATCTCTTCTCCTCCGAAACTCTGTTGAAACGCTGCCGTTTCGTCTCTAGATCGTTACCTGAGAGCTCACTGTCGATTACAAAAGAACAAGAGGTAGCTAATGAAGTAGAAGAAGATGATCCAACTTCAGAGCTGAGCTATCTGGATCCTGAATCCGATGCGGATAGCATCAAAGAGTGGGAATTGGATTTCTGCTCGAGGCCTATTCTTGATTCCAGAGGGAAAAAGATTTGGGAGCTTGTGGTTTGTGATGCTTCACTCTCCCTTCAAGTCACTAAATACTTCCCCAATAACGTCATTAATAGTATTACTCTCAAAGACGCCATTGTTACCATCACTCAAGACTTGGGTGTTCCTCTTCCTGAGAAGATTCGCTTCTTCAGGTCACAGATGCAAACCATTATCACAAAAGCTTGCAAAGAGCTTGCCATAAAGGCAGTGCCTAGTAAACGGTGTCTGTCTCTGTTTCTGTGGTTGCAAGAACGTTATGACACTGTGTACACGCGTCATCCCGGTTTCCAAAAGGGATCATTGCCTCTTCTGTCTCTCGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAATGGGCATTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAGATTTTGATGAGAAGTTTGTGTTTGGTGCTAGCTTAGACTTGGATTTACTTGGCATTGAAGTGGATGAGAATACTCTGATTCCTGGTCTCTCTGTTGCTACTTCACGTGCCAAACCTCTAGCAGCTTGGATGAATGGGCTTGAAGTATGTTCGATTGAAGCAGACAGTTCCAAAGGATGTTTGATTCTATCAGTTGGGATCGCTACAAGGTATGTCTACGCGACCTATAAGAAGACCCCTGTCACTACTGATGAAGCTGAAGCTTGGGAATCTGCAAAGAAAACAAGTGGAGGTTTGCATTTTCTTGCAATTCAAGATGACTTAGATTCTGATGACTGTGTTGGCTTTTGGCTTCTTATTGATTTGCCACCACCCCCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009639 GO:0009640 GO:0009657 GO:0009658 GO:0009704 GO:0009791 GO:0009987 GO:0010467 GO:0015979 GO:0016043 GO:0019538 GO:0019684 GO:0022607 GO:0032501 GO:0032502 GO:0034622 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048564 GO:0048856 GO:0050896 GO:0065003 GO:0071704 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1092

Protein Analysis

374

Amino Acids

41.92

Weight (kDa)

5.01

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tab2-like_N	PF06485	92 - 194	1.1e-33	RNA-binding protein Tab2/Atab2 N terminal
Tab2-like_C	PF20429	213 - 366	4.9e-44	RNA-binding protein Tab2/Atab2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08010
fragaria_vesca	FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190 FvH4_7g01190
malus_domestica	MD02G1308600.v1.1 MD07G1013000.v1.1
prunus_persica	Prupe.2G015400_v2.0.a1 Prupe.2G015400_v2.0.a1 Prupe.2G016000_v2.0.a1
pyrus_communis	pycom02g25990 pycom07g01060
rosa_chinensis	RchiOBHm_Chr1g0316521
rosa_laevigata	RLG00000030664
rosa_multiflora	Rmu_sc0002667.1_g000022 Rmu_sc0039061.1_g000001 Rmu_sc0039062.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330930
rosa_rugosa	Rorug01G0011900
rosa_samantha	Rh1AG021400 Rh1BG016800 Rh1CG019400 Rh1DG016700
rosa_wichuraiana	Rw1G001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	2 cut(s)	601, 962
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	1 cut(s)	257
AclI	AACGTT	1 cut(s)	580
AclWI	GGATC	5 cut(s)	209, 236, 249, 631, 947
AcuI	CTGAAG	3 cut(s)	207, 460, 1020
AcvI	CACGTG	1 cut(s)	848
AcyI	GRCGYC	1 cut(s)	417
AfaI	GTAC	1 cut(s)	596
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	7 cut(s)	124, 365, 707, 800, 884, 899, 1055
AjnI	CCWGG	1 cut(s)	823
Alw21I	GWGCWC	1 cut(s)	164
Alw26I	GTCTC	4 cut(s)	145, 561, 645, 833
AlwI	GGATC	5 cut(s)	209, 236, 249, 631, 947
Ama87I	CYCGRG	1 cut(s)	292
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	1 cut(s)	296
ApeKI	GCWGC	2 cut(s)	129, 863
AseI	ATTAAT	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	609
AsuNHI	GCTAGC	1 cut(s)	770
AvaI	CYCGRG	1 cut(s)	292
BamHI	GGATCC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	164
BbrPI	CACGTG	1 cut(s)	848
BbsI	GAAGAC	1 cut(s)	980
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	116, 875
BccI	CCATC	4 cut(s)	49, 92, 102, 437
BceAI	ACGGC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	825
BcnI	CCSGG	1 cut(s)	609
BcoDI	GTCTC	4 cut(s)	145, 561, 645, 833
BfaI	CTAG	4 cut(s)	144, 540, 771, 860
BglI	GCCNNNNNGGC	1 cut(s)	530
BglII	AGATCT	1 cut(s)	735
BisI	GCNGC	2 cut(s)	130, 864
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	2 cut(s)	131, 865
Bme1390I	CCNGG	2 cut(s)	609, 825
BmeT110I	CYCGRG	1 cut(s)	292
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	609, 825
BmsI	GCATC	4 cut(s)	244, 273, 337, 477
BmtI	GCTAGC	1 cut(s)	774
BoxI	GACNNNNGTC	1 cut(s)	980
BpiI	GAAGAC	1 cut(s)	980
BplI	GAGNNNNNCTC	2 cut(s)	722, 754
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	609
BsaAI	YACGTR	1 cut(s)	848
BsaHI	GRCGYC	1 cut(s)	417
BsaI	GGTCTC	1 cut(s)	833
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	665, 695
Bse3DI	GCAATG	1 cut(s)	626
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	825
BseGI	GGATG	4 cut(s)	604, 811, 876, 923
BseMI	GCAATG	1 cut(s)	626
BseMII	CTCAG	5 cut(s)	147, 221, 450, 732, 753
BseRI	GAGGAG	2 cut(s)	97, 746
BseXI	GCAGC	2 cut(s)	116, 875
Bsh1236I	CGCG	2 cut(s)	601, 962
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	164
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	609, 671
BsmAI	GTCTC	4 cut(s)	145, 561, 645, 833
BsmBI	CGTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	833
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp13I	TCCGGA	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	594
Bsp143I	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	1 cut(s)	298
BspCNI	CTCAG	5 cut(s)	148, 222, 451, 731, 752
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	2 cut(s)	601, 962
BspLI	GGNNCC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	774
BspPI	GGATC	5 cut(s)	209, 236, 249, 631, 947
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	626
BsrGI	TGTACA	1 cut(s)	594
BssMI	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
BssNI	GRCGYC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	5 cut(s)	168, 549, 592, 908, 1079
Bst6I	CTCTTC	4 cut(s)	73, 107, 459, 639
BstACI	GRCGYC	1 cut(s)	417
BstAUI	TGTACA	1 cut(s)	594
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	3 cut(s)	511, 522, 772
BstDEI	CTNAG	7 cut(s)	156, 230, 459, 718, 739, 775, 1063
BstF5I	GGATG	4 cut(s)	604, 811, 876, 923
BstFNI	CGCG	2 cut(s)	601, 962
BstKTI	GATC	6 cut(s)	149, 217, 244, 626, 738, 942
BstMAI	GTCTC	4 cut(s)	145, 561, 645, 833
BstMBI	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	825
BstPAI	GACNNNNGTC	1 cut(s)	980
BstSCI	CCNGG	2 cut(s)	607, 823
BstUI	CGCG	2 cut(s)	601, 962
BstV1I	GCAGC	2 cut(s)	116, 875
BstV2I	GAAGAC	1 cut(s)	980
BstX2I	RGATCY	2 cut(s)	241, 735
BstYI	RGATCY	2 cut(s)	241, 735
BsuRI	GGCC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	604, 811, 876, 923
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	3 cut(s)	164, 540, 588
Cac8I	GCNNGC	3 cut(s)	511, 522, 772
CseI	GACGC	2 cut(s)	425, 590
Csp6I	GTAC	1 cut(s)	595
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	7 cut(s)	156, 230, 459, 718, 739, 775, 1063
DpnI	GATC	6 cut(s)	148, 216, 243, 625, 737, 941
DpnII	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
Eam1104I	CTCTTC	4 cut(s)	73, 107, 459, 639
EarI	CTCTTC	4 cut(s)	73, 107, 459, 639
Ecl136II	GAGCTC	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	207, 460, 1020
Eco72I	CACGTG	1 cut(s)	848
Eco88I	CYCGRG	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	164
Esp3I	CGTCTC	1 cut(s)	145
FaiI	YATR	5 cut(s)	527, 585, 889, 954, 969
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	2 cut(s)	130, 864
FokI	GGATG	4 cut(s)	591, 818, 883, 930
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	2 cut(s)	130, 864
FspBI	CTAG	4 cut(s)	144, 540, 771, 860
GluI	GCNGC	2 cut(s)	130, 864
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	2 cut(s)	609, 671
HgaI	GACGC	2 cut(s)	425, 590
Hin1I	GRCGYC	1 cut(s)	417
HindIII	AAGCTT	2 cut(s)	507, 1002
HpaII	CCGG	2 cut(s)	609, 671
Hpy166II	GTNNAC	4 cut(s)	545, 595, 597, 958
Hpy188I	TCNGA	7 cut(s)	51, 112, 226, 253, 742, 819, 1072
Hpy8I	GTNNAC	4 cut(s)	545, 595, 597, 958
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	371
HpyCH4III	ACNGT	5 cut(s)	168, 549, 592, 908, 1079
HpyCH4IV	ACGT	4 cut(s)	8, 390, 580, 847
HpyCH4V	TGCA	6 cut(s)	490, 513, 574, 1016, 1039, 1049
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	7 cut(s)	156, 230, 459, 718, 739, 775, 1063
HpySE526I	ACGT	4 cut(s)	8, 390, 580, 847
Hsp92I	GRCGYC	1 cut(s)	417
Kpn2I	TCCGGA	1 cut(s)	670
Kzo9I	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	2 cut(s)	116, 875
LweI	GCATC	4 cut(s)	244, 273, 337, 477
MaeI	CTAG	4 cut(s)	144, 540, 771, 860
MaeII	ACGT	4 cut(s)	8, 390, 580, 847
MaeIII	GTNAC	5 cut(s)	150, 367, 424, 480, 982
MalI	GATC	6 cut(s)	148, 216, 243, 625, 737, 941
MboI	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
MflI	RGATCY	2 cut(s)	241, 735
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	3 cut(s)	278, 707, 1050
MluI	ACGCGT	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	242
MroI	TCCGGA	1 cut(s)	670
MseI	TTAA	2 cut(s)	18, 396
MslI	CAYNNNNRTG	1 cut(s)	800
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	2 cut(s)	609, 671
MspR9I	CCNGG	2 cut(s)	609, 825
MvaI	CCWGG	1 cut(s)	825
MvnI	CGCG	2 cut(s)	601, 962
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	609
NdeII	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
NheI	GCTAGC	1 cut(s)	770
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	367, 480, 982
PaeR7I	CTCGAG	1 cut(s)	292
PceI	AGGCCT	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	131, 865
PmaCI	CACGTG	1 cut(s)	848
PmlI	CACGTG	1 cut(s)	848
Ppu21I	YACGTR	1 cut(s)	848
PshAI	GACNNNNGTC	1 cut(s)	980
PshBI	ATTAAT	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	164
Psp1406I	AACGTT	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	823
PspCI	CACGTG	1 cut(s)	848
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	292
PsuI	RGATCY	2 cut(s)	241, 735
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	800
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	18, 396
SatI	GCNGC	2 cut(s)	130, 864
Sau3AI	GATC	6 cut(s)	146, 214, 241, 623, 735, 939
ScrFI	CCNGG	2 cut(s)	609, 825
SduI	GDGCHC	1 cut(s)	164
SfaNI	GCATC	4 cut(s)	244, 273, 337, 477
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	800
SmlI	CTYRAG	2 cut(s)	292, 435
SmoI	CTYRAG	2 cut(s)	292, 435
Sse9I	AATT	3 cut(s)	278, 707, 1050
SseBI	AGGCCT	1 cut(s)	298
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	144, 540, 771, 860
SstI	GAGCTC	1 cut(s)	164
StuI	AGGCCT	1 cut(s)	298
StyD4I	CCNGG	2 cut(s)	607, 823
TaaI	ACNGT	5 cut(s)	168, 549, 592, 908, 1079
TaiI	ACGT	4 cut(s)	11, 393, 583, 850
TaqI	TCGA	4 cut(s)	170, 293, 645, 893
TasI	AATT	3 cut(s)	278, 707, 1050
TatI	WGTACW	1 cut(s)	594
Tru1I	TTAA	2 cut(s)	18, 396
Tru9I	TTAA	2 cut(s)	18, 396
TscAI	CASTG	3 cut(s)	171, 540, 595
TseFI	GTSAC	3 cut(s)	367, 480, 982
TseI	GCWGC	2 cut(s)	129, 863
Tsp45I	GTSAC	3 cut(s)	367, 480, 982
TspDTI	ATGAA	4 cut(s)	213, 677, 887, 1008
TspRI	CASTG	3 cut(s)	171, 540, 595
VspI	ATTAAT	1 cut(s)	396
XbaI	TCTAGA	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	957
XspI	CTAG	4 cut(s)	144, 540, 771, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.